Wall clock time and date at job start Tue Mar 31 2020 20:55:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09004 * 109.46930 * 2 1 4 4 C 1.52999 * 109.47076 * 240.00767 * 2 1 3 5 5 N 1.46898 * 109.47289 * 64.99529 * 4 2 1 6 6 C 1.46905 * 110.99714 * 180.02562 * 5 4 2 7 7 C 1.50698 * 109.46911 * 180.02562 * 6 5 4 8 8 O 1.21295 * 120.00160 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99883 * 180.02562 * 7 6 5 10 10 C 1.37102 * 120.00013 * 179.97438 * 9 7 6 11 11 H 1.08003 * 119.99897 * 0.02562 * 10 9 7 12 12 C 1.38946 * 119.99926 * 179.97438 * 10 9 7 13 13 N 1.31407 * 120.00123 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 119.99884 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47400 * 59.99999 * 14 12 10 16 16 H 1.48504 * 109.47321 * 180.02562 * 14 12 10 17 17 H 1.48508 * 109.47310 * 300.00017 * 14 12 10 18 18 C 1.52989 * 109.47250 * 120.00281 * 2 1 3 19 19 N 1.46505 * 109.47403 * 295.00095 * 18 2 1 20 20 C 1.34774 * 120.00091 * 180.02562 * 19 18 2 21 21 O 1.21616 * 120.00334 * 359.97438 * 20 19 18 22 22 C 1.47104 * 119.99849 * 179.97438 * 20 19 18 23 23 C 1.31564 * 119.85401 * 179.97438 * 22 20 19 24 24 C 1.51408 * 120.29197 * 180.02562 * 23 22 20 25 25 C 1.53035 * 108.72368 * 288.29698 * 24 23 22 26 26 C 1.52000 * 110.69386 * 85.50357 * 25 24 23 27 27 C 1.51779 * 114.00786 * 293.31645 * 26 25 24 28 28 C 1.51403 * 119.85370 * 359.97438 * 22 20 19 29 29 H 1.08999 * 109.46583 * 299.99709 * 1 2 3 30 30 H 1.09000 * 109.46818 * 59.99737 * 1 2 3 31 31 H 1.08991 * 109.46982 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47187 * 184.99922 * 4 2 1 33 33 H 1.09001 * 109.46615 * 304.99637 * 4 2 1 34 34 H 1.00899 * 110.99849 * 56.04886 * 5 4 2 35 35 H 1.09003 * 109.47037 * 299.99851 * 6 5 4 36 36 H 1.08995 * 109.46991 * 60.00317 * 6 5 4 37 37 H 0.96996 * 120.00116 * 359.97438 * 9 7 6 38 38 H 0.97001 * 119.99819 * 179.97438 * 13 12 10 39 39 H 1.09003 * 109.47254 * 175.00237 * 18 2 1 40 40 H 1.08999 * 109.47713 * 54.99910 * 18 2 1 41 41 H 0.97003 * 119.99585 * 359.97438 * 19 18 2 42 42 H 1.07997 * 119.85244 * 0.02562 * 23 22 20 43 43 H 1.09002 * 109.62273 * 48.11558 * 24 23 22 44 44 H 1.08998 * 109.62018 * 168.48044 * 24 23 22 45 45 H 1.09000 * 109.20742 * 206.15086 * 25 24 23 46 46 H 1.09006 * 109.21011 * 325.46269 * 25 24 23 47 47 H 1.09002 * 108.55825 * 172.11279 * 26 25 24 48 48 H 1.09004 * 108.48856 * 54.46818 * 26 25 24 49 49 H 1.08992 * 109.21000 * 306.55501 * 27 26 25 50 50 H 1.09003 * 109.16868 * 187.21462 * 27 26 25 51 51 H 1.08997 * 109.62394 * 11.30859 * 28 22 20 52 52 H 1.09002 * 109.62765 * 131.67778 * 28 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2493 5 7 1.6513 0.0377 -2.4456 6 6 2.1247 -0.6269 -3.6673 7 6 1.7087 0.1790 -4.8708 8 8 1.0793 1.2056 -4.7253 9 7 2.0351 -0.2416 -6.1090 10 6 1.6562 0.4913 -7.2040 11 1 1.0965 1.4058 -7.0744 12 6 1.9931 0.0580 -8.4805 13 7 2.6754 -1.0540 -8.6381 14 14 1.4775 1.0568 -9.9723 15 1 2.0697 2.4159 -9.8869 16 1 1.9554 0.3848 -11.2073 17 1 -0.0033 1.1635 -10.0089 18 6 2.0401 -0.7213 1.2491 19 7 1.6525 0.0353 2.4424 20 6 1.9966 -0.4133 3.6658 21 8 2.6283 -1.4462 3.7794 22 6 1.6079 0.3467 4.8639 23 6 1.9448 -0.0940 6.0569 24 6 1.5494 0.6799 7.2967 25 6 2.3926 1.9550 7.3696 26 6 1.7554 3.0677 6.5534 27 6 1.7427 2.8072 5.0581 28 6 0.8219 1.6325 4.7187 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1263 -0.7993 -1.2057 33 1 1.6054 -1.7196 -1.2953 34 1 1.9881 0.9875 -2.3966 35 1 3.2117 -0.7047 -3.6406 36 1 1.6904 -1.6245 -3.7298 37 1 2.5381 -1.0627 -6.2254 38 1 2.9103 -1.3567 -9.5293 39 1 3.1264 -0.7994 1.2055 40 1 1.6055 -1.7198 1.2951 41 1 1.1489 0.8594 2.3518 42 1 2.5058 -1.0119 6.1522 43 1 0.4929 0.9424 7.2429 44 1 1.7305 0.0703 8.1819 45 1 2.4780 2.2694 8.4097 46 1 3.3878 1.7499 6.9748 47 1 2.3018 3.9920 6.7409 48 1 0.7278 3.1999 6.8922 49 1 2.7549 2.5773 4.7256 50 1 1.3899 3.7003 4.5423 51 1 0.4665 1.7305 3.6929 52 1 -0.0281 1.6211 5.4009 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319180387.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:55:00 Heat of formation + Delta-G solvation = -84.869674 kcal Electronic energy + Delta-G solvation = -28286.973453 eV Core-core repulsion = 24285.361110 eV Total energy + Delta-G solvation = -4001.612343 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.43585 -38.55468 -38.25723 -37.14642 -34.94230 -33.87655 -33.11757 -32.65019 -31.86548 -31.18167 -27.42975 -27.08778 -26.04638 -25.04556 -24.32393 -23.08026 -21.51878 -20.82653 -20.66251 -19.26003 -18.55166 -17.86005 -17.59719 -16.60474 -15.97493 -15.88494 -15.41692 -15.34633 -15.23594 -14.70399 -14.51265 -14.34042 -14.22643 -14.07851 -13.73780 -13.61743 -13.52451 -13.26181 -13.12192 -12.62056 -12.45547 -12.39307 -12.12279 -11.92685 -11.67912 -11.59535 -11.51295 -11.18381 -11.16407 -11.13397 -11.05389 -10.97491 -10.94760 -10.86561 -10.44106 -10.21210 -10.05762 -9.51472 -9.49715 -9.21709 -8.45955 -8.05187 -7.95471 -6.41252 -3.82243 1.09801 2.93077 3.04155 3.20321 3.26042 3.30380 3.91431 4.08575 4.14260 4.28426 4.32734 4.36281 4.49832 4.53505 4.68917 4.71575 4.82778 4.88558 4.93895 5.01057 5.15230 5.17392 5.22846 5.26408 5.29092 5.34087 5.35141 5.48119 5.56921 5.62471 5.64418 5.65897 5.68210 5.69549 5.76498 5.87522 5.88935 5.89760 5.99262 6.04791 6.11132 6.19316 6.26096 6.27449 6.39735 7.20236 7.27224 7.55219 7.65396 7.99474 8.06460 8.61678 9.18057 9.54765 10.06202 10.76385 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.030117 B = 0.001488 C = 0.001446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.495043 B =18809.563339 C =19364.226373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.100 4.100 3 H 0.076 0.924 4 C 0.066 3.934 5 N -0.666 5.666 6 C 0.051 3.949 7 C 0.441 3.559 8 O -0.584 6.584 9 N -0.563 5.563 10 C -0.301 4.301 11 H 0.102 0.898 12 C 0.023 3.977 13 N -0.902 5.902 14 Si 0.931 3.069 15 H -0.274 1.274 16 H -0.284 1.284 17 H -0.273 1.273 18 C 0.123 3.877 19 N -0.722 5.722 20 C 0.551 3.449 21 O -0.547 6.547 22 C -0.181 4.181 23 C -0.069 4.069 24 C -0.097 4.097 25 C -0.114 4.114 26 C -0.120 4.120 27 C -0.116 4.116 28 C -0.081 4.081 29 H 0.043 0.957 30 H 0.077 0.923 31 H 0.053 0.947 32 H 0.029 0.971 33 H 0.074 0.926 34 H 0.348 0.652 35 H 0.043 0.957 36 H 0.086 0.914 37 H 0.392 0.608 38 H 0.272 0.728 39 H 0.067 0.933 40 H 0.070 0.930 41 H 0.401 0.599 42 H 0.125 0.875 43 H 0.079 0.921 44 H 0.074 0.926 45 H 0.068 0.932 46 H 0.065 0.935 47 H 0.061 0.939 48 H 0.060 0.940 49 H 0.065 0.935 50 H 0.069 0.931 51 H 0.068 0.932 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.046 3.512 31.416 31.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.119 4.119 3 H 0.095 0.905 4 C -0.064 4.064 5 N -0.298 5.298 6 C -0.082 4.082 7 C 0.226 3.774 8 O -0.468 6.468 9 N -0.200 5.200 10 C -0.430 4.430 11 H 0.120 0.880 12 C -0.179 4.179 13 N -0.543 5.543 14 Si 0.758 3.242 15 H -0.199 1.199 16 H -0.210 1.210 17 H -0.199 1.199 18 C -0.001 4.001 19 N -0.375 5.375 20 C 0.340 3.660 21 O -0.426 6.426 22 C -0.184 4.184 23 C -0.089 4.089 24 C -0.134 4.134 25 C -0.152 4.152 26 C -0.157 4.157 27 C -0.154 4.154 28 C -0.118 4.118 29 H 0.062 0.938 30 H 0.096 0.904 31 H 0.073 0.927 32 H 0.047 0.953 33 H 0.093 0.907 34 H 0.167 0.833 35 H 0.061 0.939 36 H 0.104 0.896 37 H 0.226 0.774 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.089 0.911 41 H 0.238 0.762 42 H 0.143 0.857 43 H 0.097 0.903 44 H 0.093 0.907 45 H 0.087 0.913 46 H 0.083 0.917 47 H 0.079 0.921 48 H 0.079 0.921 49 H 0.083 0.917 50 H 0.088 0.912 51 H 0.086 0.914 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.576 3.101 31.325 31.517 hybrid contribution 0.879 0.361 -1.011 1.388 sum -0.697 3.463 30.314 30.519 Atomic orbital electron populations 1.21759 0.93728 1.02210 1.02042 1.21342 0.97628 0.99941 0.92981 0.90549 1.21893 0.97351 0.97978 0.89199 1.60035 1.64167 1.05823 0.99784 1.21666 0.97758 0.98658 0.90108 1.19810 0.85551 0.87931 0.84087 1.90516 1.44138 1.26441 1.85750 1.41860 1.49502 1.24213 1.04434 1.19659 1.33012 1.06725 0.83645 0.87976 1.25258 0.96888 0.96646 0.99103 1.69604 1.38796 1.21735 1.24158 0.85915 0.79056 0.79372 0.79842 1.19936 1.20977 1.19887 1.21409 1.00045 0.95484 0.83120 1.45990 1.57765 1.27911 1.05796 1.18419 0.79156 0.84816 0.83633 1.90791 1.40464 1.24481 1.86882 1.21203 1.04987 0.98734 0.93474 1.23346 0.94144 0.98035 0.93349 1.20969 1.00573 0.96194 0.95699 1.21302 0.99483 0.94171 1.00242 1.21174 1.01249 0.98405 0.94906 1.21310 1.00250 0.97631 0.96205 1.20781 0.97556 0.91369 1.02128 0.93787 0.90376 0.92747 0.95268 0.90714 0.83256 0.93887 0.89580 0.77449 0.91820 0.91457 0.91149 0.76231 0.85675 0.90263 0.90706 0.91332 0.91668 0.92062 0.92090 0.91664 0.91237 0.91362 0.90164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 8.95 37.16 0.33 -1.09 16 2 C -0.10 -0.98 2.57 -90.62 -0.23 -1.21 16 3 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 4 C 0.07 0.78 5.07 -3.83 -0.02 0.76 16 5 N -0.67 -10.33 5.58 -115.06 -0.64 -10.98 16 6 C 0.05 0.89 6.17 -4.97 -0.03 0.86 16 7 C 0.44 10.38 7.82 -10.99 -0.09 10.30 16 8 O -0.58 -15.77 15.78 5.54 0.09 -15.68 16 9 N -0.56 -14.32 5.29 -10.96 -0.06 -14.38 16 10 C -0.30 -8.42 9.68 -14.93 -0.14 -8.56 16 11 H 0.10 2.99 7.16 -52.48 -0.38 2.61 16 12 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 13 N -0.90 -24.58 13.05 55.50 0.72 -23.85 16 14 Si 0.93 21.07 29.55 -169.99 -5.02 16.04 16 15 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 16 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 17 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 18 C 0.12 1.22 5.06 -4.04 -0.02 1.20 16 19 N -0.72 -6.59 5.24 -61.49 -0.32 -6.91 16 20 C 0.55 6.06 7.75 -12.66 -0.10 5.96 16 21 O -0.55 -8.12 16.18 5.26 0.09 -8.03 16 22 C -0.18 -1.47 5.10 -102.53 -0.52 -1.99 16 23 C -0.07 -0.52 8.93 -35.81 -0.32 -0.84 16 24 C -0.10 -0.48 5.61 -27.52 -0.15 -0.64 16 25 C -0.11 -0.53 5.69 -27.22 -0.15 -0.69 16 26 C -0.12 -0.54 5.27 -27.86 -0.15 -0.69 16 27 C -0.12 -0.61 5.67 -27.31 -0.15 -0.76 16 28 C -0.08 -0.46 5.36 -27.50 -0.15 -0.60 16 29 H 0.04 0.37 7.18 -51.93 -0.37 -0.01 16 30 H 0.08 0.97 7.75 -51.93 -0.40 0.57 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.35 5.57 8.43 -39.29 -0.33 5.24 16 35 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 37 H 0.39 9.54 7.90 -40.82 -0.32 9.21 16 38 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.40 2.83 5.43 -40.82 -0.22 2.61 16 42 H 0.13 1.10 7.44 -52.49 -0.39 0.71 16 43 H 0.08 0.35 6.75 -51.93 -0.35 0.00 16 44 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 45 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 46 H 0.06 0.37 7.86 -51.93 -0.41 -0.04 16 47 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 48 H 0.06 0.24 7.88 -51.93 -0.41 -0.17 16 49 H 0.06 0.42 7.85 -51.93 -0.41 0.01 16 50 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 51 H 0.07 0.34 5.99 -51.93 -0.31 0.03 16 52 H 0.08 0.39 6.76 -51.93 -0.35 0.04 16 LS Contribution 412.59 15.07 6.22 6.22 Total: -1.00 -33.03 412.59 -9.79 -42.82 By element: Atomic # 1 Polarization: 21.10 SS G_CDS: -8.86 Total: 12.24 kcal Atomic # 6 Polarization: 4.51 SS G_CDS: -2.00 Total: 2.51 kcal Atomic # 7 Polarization: -55.82 SS G_CDS: -0.30 Total: -56.12 kcal Atomic # 8 Polarization: -23.88 SS G_CDS: 0.17 Total: -23.71 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -33.03 -9.79 -42.82 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319180387.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.052 kcal (2) G-P(sol) polarization free energy of solvation -33.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds