Wall clock time and date at job start Tue Mar 31 2020 20:54:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09004 * 109.46930 * 2 1 4 4 C 1.52999 * 109.47076 * 240.00767 * 2 1 3 5 5 N 1.46898 * 109.47289 * 64.99529 * 4 2 1 6 6 C 1.46905 * 110.99714 * 180.02562 * 5 4 2 7 7 C 1.50698 * 109.46911 * 180.02562 * 6 5 4 8 8 O 1.21295 * 120.00160 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99883 * 180.02562 * 7 6 5 10 10 C 1.37102 * 120.00013 * 179.97438 * 9 7 6 11 11 H 1.08003 * 119.99897 * 0.02562 * 10 9 7 12 12 C 1.38946 * 119.99926 * 179.97438 * 10 9 7 13 13 N 1.31407 * 120.00123 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 119.99884 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47400 * 59.99999 * 14 12 10 16 16 H 1.48504 * 109.47321 * 180.02562 * 14 12 10 17 17 H 1.48508 * 109.47310 * 300.00017 * 14 12 10 18 18 C 1.52989 * 109.47250 * 120.00281 * 2 1 3 19 19 N 1.46505 * 109.47403 * 295.00095 * 18 2 1 20 20 C 1.34774 * 120.00091 * 180.02562 * 19 18 2 21 21 O 1.21616 * 120.00334 * 359.97438 * 20 19 18 22 22 C 1.47104 * 119.99849 * 179.97438 * 20 19 18 23 23 C 1.31564 * 119.85401 * 179.97438 * 22 20 19 24 24 C 1.51408 * 120.29197 * 180.02562 * 23 22 20 25 25 C 1.53035 * 108.72368 * 288.29698 * 24 23 22 26 26 C 1.52000 * 110.69386 * 85.50357 * 25 24 23 27 27 C 1.51779 * 114.00786 * 293.31645 * 26 25 24 28 28 C 1.51403 * 119.85370 * 359.97438 * 22 20 19 29 29 H 1.08999 * 109.46583 * 299.99709 * 1 2 3 30 30 H 1.09000 * 109.46818 * 59.99737 * 1 2 3 31 31 H 1.08991 * 109.46982 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47187 * 184.99922 * 4 2 1 33 33 H 1.09001 * 109.46615 * 304.99637 * 4 2 1 34 34 H 1.00899 * 110.99849 * 56.04886 * 5 4 2 35 35 H 1.09003 * 109.47037 * 299.99851 * 6 5 4 36 36 H 1.08995 * 109.46991 * 60.00317 * 6 5 4 37 37 H 0.96996 * 120.00116 * 359.97438 * 9 7 6 38 38 H 0.97001 * 119.99819 * 179.97438 * 13 12 10 39 39 H 1.09003 * 109.47254 * 175.00237 * 18 2 1 40 40 H 1.08999 * 109.47713 * 54.99910 * 18 2 1 41 41 H 0.97003 * 119.99585 * 359.97438 * 19 18 2 42 42 H 1.07997 * 119.85244 * 0.02562 * 23 22 20 43 43 H 1.09002 * 109.62273 * 48.11558 * 24 23 22 44 44 H 1.08998 * 109.62018 * 168.48044 * 24 23 22 45 45 H 1.09000 * 109.20742 * 206.15086 * 25 24 23 46 46 H 1.09006 * 109.21011 * 325.46269 * 25 24 23 47 47 H 1.09002 * 108.55825 * 172.11279 * 26 25 24 48 48 H 1.09004 * 108.48856 * 54.46818 * 26 25 24 49 49 H 1.08992 * 109.21000 * 306.55501 * 27 26 25 50 50 H 1.09003 * 109.16868 * 187.21462 * 27 26 25 51 51 H 1.08997 * 109.62394 * 11.30859 * 28 22 20 52 52 H 1.09002 * 109.62765 * 131.67778 * 28 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2493 5 7 1.6513 0.0377 -2.4456 6 6 2.1247 -0.6269 -3.6673 7 6 1.7087 0.1790 -4.8708 8 8 1.0793 1.2056 -4.7253 9 7 2.0351 -0.2416 -6.1090 10 6 1.6562 0.4913 -7.2040 11 1 1.0965 1.4058 -7.0744 12 6 1.9931 0.0580 -8.4805 13 7 2.6754 -1.0540 -8.6381 14 14 1.4775 1.0568 -9.9723 15 1 2.0697 2.4159 -9.8869 16 1 1.9554 0.3848 -11.2073 17 1 -0.0033 1.1635 -10.0089 18 6 2.0401 -0.7213 1.2491 19 7 1.6525 0.0353 2.4424 20 6 1.9966 -0.4133 3.6658 21 8 2.6283 -1.4462 3.7794 22 6 1.6079 0.3467 4.8639 23 6 1.9448 -0.0940 6.0569 24 6 1.5494 0.6799 7.2967 25 6 2.3926 1.9550 7.3696 26 6 1.7554 3.0677 6.5534 27 6 1.7427 2.8072 5.0581 28 6 0.8219 1.6325 4.7187 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1263 -0.7993 -1.2057 33 1 1.6054 -1.7196 -1.2953 34 1 1.9881 0.9875 -2.3966 35 1 3.2117 -0.7047 -3.6406 36 1 1.6904 -1.6245 -3.7298 37 1 2.5381 -1.0627 -6.2254 38 1 2.9103 -1.3567 -9.5293 39 1 3.1264 -0.7994 1.2055 40 1 1.6055 -1.7198 1.2951 41 1 1.1489 0.8594 2.3518 42 1 2.5058 -1.0119 6.1522 43 1 0.4929 0.9424 7.2429 44 1 1.7305 0.0703 8.1819 45 1 2.4780 2.2694 8.4097 46 1 3.3878 1.7499 6.9748 47 1 2.3018 3.9920 6.7409 48 1 0.7278 3.1999 6.8922 49 1 2.7549 2.5773 4.7256 50 1 1.3899 3.7003 4.5423 51 1 0.4665 1.7305 3.6929 52 1 -0.0281 1.6211 5.4009 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319180387.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:58 Heat of formation + Delta-G solvation = -107.592723 kcal Electronic energy + Delta-G solvation = -28287.958798 eV Core-core repulsion = 24285.361110 eV Total energy + Delta-G solvation = -4002.597689 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.20379 -40.16882 -39.03062 -38.19641 -36.21950 -35.68772 -33.84969 -33.33576 -33.17103 -32.51590 -28.85754 -27.88111 -26.79362 -26.36269 -25.16776 -24.20484 -22.26000 -21.63921 -21.21468 -20.98259 -19.91383 -19.27939 -18.19726 -17.83844 -17.23605 -16.99848 -16.59844 -16.37603 -16.14892 -15.84491 -15.76511 -15.45097 -15.17706 -15.14325 -14.77443 -14.53380 -14.39041 -14.08269 -13.91279 -13.80130 -13.55115 -13.41044 -13.17004 -13.03471 -12.93315 -12.83664 -12.58506 -12.43021 -12.12775 -12.11629 -12.03005 -11.95182 -11.73130 -11.59781 -11.52208 -11.49531 -11.33498 -10.88916 -10.34080 -10.25392 -10.01448 -9.89597 -9.30567 -8.46200 -5.95255 0.42383 1.40344 1.42204 1.53218 2.05733 2.14399 2.26051 2.30272 2.94803 3.21122 3.52321 3.64678 3.74449 3.84495 3.95163 3.99111 4.03835 4.10761 4.13520 4.23019 4.32766 4.47341 4.47383 4.48314 4.57083 4.58781 4.61343 4.71478 4.77350 4.81885 4.84456 4.87955 4.95256 4.96013 5.06764 5.23085 5.25170 5.27600 5.28461 5.32860 5.40459 5.40892 5.51200 5.51794 5.55948 5.65634 5.88244 6.09653 6.41314 6.52350 6.60273 7.12613 7.18847 7.56536 8.11560 8.70907 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.030117 B = 0.001488 C = 0.001446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.495043 B =18809.563339 C =19364.226373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.087 4.087 3 H 0.084 0.916 4 C 0.067 3.933 5 N -0.676 5.676 6 C 0.065 3.935 7 C 0.438 3.562 8 O -0.622 6.622 9 N -0.574 5.574 10 C -0.336 4.336 11 H 0.080 0.920 12 C -0.013 4.013 13 N -0.920 5.920 14 Si 0.994 3.006 15 H -0.271 1.271 16 H -0.271 1.271 17 H -0.272 1.272 18 C 0.130 3.870 19 N -0.711 5.711 20 C 0.545 3.455 21 O -0.594 6.594 22 C -0.190 4.190 23 C -0.067 4.067 24 C -0.092 4.092 25 C -0.113 4.113 26 C -0.120 4.120 27 C -0.115 4.115 28 C -0.076 4.076 29 H 0.063 0.937 30 H 0.055 0.945 31 H 0.050 0.950 32 H 0.040 0.960 33 H 0.078 0.922 34 H 0.345 0.655 35 H 0.065 0.935 36 H 0.102 0.898 37 H 0.396 0.604 38 H 0.278 0.722 39 H 0.061 0.939 40 H 0.063 0.937 41 H 0.413 0.587 42 H 0.106 0.894 43 H 0.092 0.908 44 H 0.084 0.916 45 H 0.082 0.918 46 H 0.050 0.950 47 H 0.064 0.936 48 H 0.072 0.928 49 H 0.049 0.951 50 H 0.079 0.921 51 H 0.075 0.925 52 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.547 4.269 32.509 32.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.106 4.106 3 H 0.102 0.898 4 C -0.063 4.063 5 N -0.308 5.308 6 C -0.068 4.068 7 C 0.225 3.775 8 O -0.509 6.509 9 N -0.211 5.211 10 C -0.466 4.466 11 H 0.098 0.902 12 C -0.212 4.212 13 N -0.561 5.561 14 Si 0.817 3.183 15 H -0.196 1.196 16 H -0.195 1.195 17 H -0.197 1.197 18 C 0.005 3.995 19 N -0.364 5.364 20 C 0.335 3.665 21 O -0.477 6.477 22 C -0.193 4.193 23 C -0.087 4.087 24 C -0.129 4.129 25 C -0.151 4.151 26 C -0.158 4.158 27 C -0.153 4.153 28 C -0.113 4.113 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.058 0.942 33 H 0.097 0.903 34 H 0.163 0.837 35 H 0.083 0.917 36 H 0.121 0.879 37 H 0.230 0.770 38 H 0.087 0.913 39 H 0.079 0.921 40 H 0.081 0.919 41 H 0.252 0.748 42 H 0.124 0.876 43 H 0.110 0.890 44 H 0.103 0.897 45 H 0.101 0.899 46 H 0.069 0.931 47 H 0.083 0.917 48 H 0.091 0.909 49 H 0.068 0.932 50 H 0.098 0.902 51 H 0.093 0.907 52 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.081 3.862 32.425 32.720 hybrid contribution 1.052 0.097 -1.279 1.659 sum -1.029 3.959 31.146 31.414 Atomic orbital electron populations 1.21707 0.93771 1.01967 1.01900 1.21200 0.97370 1.00033 0.91982 0.89808 1.21959 0.98160 0.97838 0.88298 1.60029 1.64649 1.05930 1.00216 1.21526 0.99069 0.98059 0.88141 1.20868 0.83897 0.87633 0.85056 1.90484 1.45541 1.28326 1.86500 1.41937 1.50050 1.24327 1.04768 1.19655 1.34570 1.07028 0.85328 0.90221 1.26044 0.96394 0.97571 1.01226 1.69668 1.38872 1.22490 1.25093 0.84981 0.78621 0.78024 0.76656 1.19638 1.19532 1.19723 1.21268 0.99597 0.95256 0.83330 1.45905 1.57215 1.28057 1.05174 1.18946 0.78409 0.84417 0.84751 1.90763 1.42732 1.26615 1.87551 1.21254 1.06042 0.99729 0.92303 1.23509 0.93174 0.97463 0.94509 1.21013 1.01245 0.96103 0.94559 1.21303 0.98629 0.94063 1.01072 1.21187 1.01965 0.98359 0.94267 1.21308 0.99262 0.97773 0.96953 1.20817 0.97574 0.89936 1.03002 0.91809 0.92592 0.93050 0.94151 0.90340 0.83665 0.91693 0.87948 0.77011 0.91311 0.92071 0.91879 0.74847 0.87605 0.88987 0.89716 0.89940 0.93094 0.91730 0.90934 0.93248 0.90232 0.90663 0.88789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.60 8.95 71.98 0.64 -1.95 16 2 C -0.09 -1.59 2.57 -10.80 -0.03 -1.62 16 3 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 4 C 0.07 1.47 5.07 86.30 0.44 1.91 16 5 N -0.68 -20.30 5.58 -517.94 -2.89 -23.19 16 6 C 0.06 2.18 6.17 85.56 0.53 2.71 16 7 C 0.44 20.76 7.82 87.66 0.69 21.44 16 8 O -0.62 -34.18 15.78 -3.08 -0.05 -34.23 16 9 N -0.57 -29.52 5.29 -306.98 -1.62 -31.14 16 10 C -0.34 -19.15 9.68 84.04 0.81 -18.34 16 11 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 12 C -0.01 -0.67 5.50 84.93 0.47 -0.21 16 13 N -0.92 -49.82 13.05 21.66 0.28 -49.54 16 14 Si 0.99 42.91 29.55 68.60 2.03 44.94 16 15 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 16 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 17 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 18 C 0.13 2.46 5.06 86.37 0.44 2.90 16 19 N -0.71 -12.32 5.24 -466.71 -2.45 -14.77 16 20 C 0.54 11.93 7.75 86.57 0.67 12.60 16 21 O -0.59 -18.15 16.18 -4.08 -0.07 -18.21 16 22 C -0.19 -2.96 5.10 -17.89 -0.09 -3.05 16 23 C -0.07 -0.98 8.93 25.34 0.23 -0.75 16 24 C -0.09 -0.76 5.61 30.08 0.17 -0.59 16 25 C -0.11 -0.86 5.69 30.28 0.17 -0.69 16 26 C -0.12 -0.82 5.27 29.86 0.16 -0.66 16 27 C -0.12 -1.00 5.67 30.22 0.17 -0.83 16 28 C -0.08 -0.71 5.36 30.10 0.16 -0.55 16 29 H 0.06 0.94 7.18 -2.39 -0.02 0.93 16 30 H 0.05 1.35 7.75 -2.39 -0.02 1.33 16 31 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.34 10.78 8.43 -89.69 -0.76 10.03 16 35 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.10 3.17 8.14 -2.39 -0.02 3.15 16 37 H 0.40 19.39 7.90 -92.71 -0.73 18.66 16 38 H 0.28 14.10 8.31 -92.71 -0.77 13.33 16 39 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.41 5.13 5.43 -92.71 -0.50 4.62 16 42 H 0.11 1.95 7.44 -2.91 -0.02 1.93 16 43 H 0.09 0.56 6.75 -2.39 -0.02 0.55 16 44 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 45 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 46 H 0.05 0.54 7.86 -2.38 -0.02 0.52 16 47 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 48 H 0.07 0.35 7.88 -2.39 -0.02 0.33 16 49 H 0.05 0.59 7.85 -2.39 -0.02 0.57 16 50 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 51 H 0.07 0.58 5.99 -2.39 -0.01 0.56 16 52 H 0.09 0.65 6.76 -2.39 -0.02 0.63 16 Total: -1.00 -72.53 412.59 -0.20 -72.72 By element: Atomic # 1 Polarization: 42.14 SS G_CDS: -1.06 Total: 41.08 kcal Atomic # 6 Polarization: 6.70 SS G_CDS: 5.62 Total: 12.33 kcal Atomic # 7 Polarization: -111.95 SS G_CDS: -6.68 Total: -118.63 kcal Atomic # 8 Polarization: -52.33 SS G_CDS: -0.11 Total: -52.44 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Total: -72.53 -0.20 -72.72 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319180387.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.868 kcal (2) G-P(sol) polarization free energy of solvation -72.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds