Wall clock time and date at job start Tue Mar 31 2020 20:35:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09001 * 109.47504 * 2 1 4 4 C 1.53005 * 109.47097 * 120.00243 * 2 1 3 5 5 N 1.46900 * 109.47035 * 174.78574 * 4 2 1 6 6 C 1.46848 * 110.99606 * 200.13113 * 5 4 2 7 7 C 1.53040 * 109.52435 * 174.15783 * 6 5 4 8 8 C 1.53126 * 109.27377 * 59.17893 * 7 6 5 9 9 C 1.53118 * 109.16458 * 302.34673 * 8 7 6 10 10 C 1.46847 * 111.00283 * 75.92614 * 5 4 2 11 11 N 1.46504 * 109.47683 * 239.99992 * 2 1 3 12 12 C 1.34781 * 119.99901 * 88.56816 * 11 2 1 13 13 O 1.21349 * 120.00005 * 0.02562 * 12 11 2 14 14 C 1.49441 * 119.99899 * 180.02562 * 12 11 2 15 15 O 1.21351 * 120.00181 * 5.09625 * 14 12 11 16 16 N 1.34780 * 119.99998 * 185.09274 * 14 12 11 17 17 C 1.46506 * 120.00031 * 185.02730 * 16 14 12 18 18 C 1.52992 * 109.46956 * 184.77676 * 17 16 14 19 19 C 1.50699 * 115.55282 * 294.86875 * 18 17 16 20 20 H 1.08004 * 120.00463 * 95.11614 * 19 18 17 21 21 C 1.37881 * 119.99735 * 274.84320 * 19 18 17 22 22 N 1.31506 * 120.00162 * 355.42047 * 21 19 18 23 23 Si 1.86800 * 119.99839 * 175.41443 * 21 19 18 24 24 H 1.48497 * 109.47193 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.46855 * 120.00500 * 23 21 19 26 26 H 1.48494 * 109.47338 * 240.00056 * 23 21 19 27 27 C 1.53008 * 117.50235 * 80.53604 * 18 17 16 28 28 C 1.53002 * 117.49777 * 149.19784 * 18 17 16 29 29 H 1.09004 * 109.47341 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47885 * 300.00166 * 1 2 3 31 31 H 1.09004 * 109.47026 * 59.99892 * 1 2 3 32 32 H 1.09006 * 109.46672 * 294.78276 * 4 2 1 33 33 H 1.08997 * 109.47145 * 54.78489 * 4 2 1 34 34 H 1.08999 * 109.46865 * 294.17670 * 6 5 4 35 35 H 1.09002 * 109.46457 * 54.14374 * 6 5 4 36 36 H 1.08993 * 109.50452 * 299.24427 * 7 6 5 37 37 H 1.09000 * 109.53539 * 179.13940 * 7 6 5 38 38 H 1.09005 * 109.52047 * 182.43869 * 8 7 6 39 39 H 1.09001 * 109.57172 * 62.28922 * 8 7 6 40 40 H 1.08996 * 109.50145 * 297.71407 * 9 8 7 41 41 H 1.08990 * 109.50548 * 177.59567 * 9 8 7 42 42 H 1.09007 * 109.45651 * 305.85242 * 10 5 4 43 43 H 1.08996 * 109.46336 * 65.81816 * 10 5 4 44 44 H 0.96993 * 119.99854 * 268.57791 * 11 2 1 45 45 H 0.96995 * 120.00071 * 5.01921 * 16 14 12 46 46 H 1.08995 * 109.47467 * 64.77525 * 17 16 14 47 47 H 1.08997 * 109.46895 * 304.77546 * 17 16 14 48 48 H 0.96999 * 120.00377 * 184.99910 * 22 21 19 49 49 H 1.08995 * 117.50303 * 215.00330 * 27 18 17 50 50 H 1.09005 * 117.49014 * 0.02562 * 27 18 17 51 51 H 1.08989 * 117.50041 * 359.97438 * 28 18 17 52 52 H 1.09004 * 117.49863 * 144.97715 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 3.5035 -0.8313 1.1880 6 6 3.9890 -1.8943 2.0771 7 6 5.4955 -2.0780 1.8797 8 6 6.2104 -0.7602 2.1911 9 6 5.6524 0.3407 1.2850 10 6 4.1414 0.4542 1.4997 11 7 2.0184 -0.6906 -1.1962 12 6 2.2156 -0.0026 -2.3382 13 8 1.9890 1.1890 -2.3756 14 6 2.7133 -0.7071 -3.5585 15 8 2.8519 -1.9127 -3.5491 16 7 3.0083 -0.0036 -4.6697 17 6 3.3904 -0.7025 -5.8993 18 6 3.7855 0.3208 -6.9657 19 6 2.6779 1.2259 -7.4402 20 1 2.5489 2.2011 -6.9943 21 6 1.8325 0.8111 -8.4474 22 7 2.0470 -0.3349 -9.0557 23 14 0.3825 1.8771 -8.9478 24 1 0.3623 3.1074 -8.1164 25 1 0.5128 2.2497 -10.3794 26 1 -0.8801 1.1220 -8.7460 27 6 5.1959 0.9095 -6.8920 28 6 4.8429 -0.0979 -7.9892 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3635 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.7548 -0.1563 2.1368 33 1 1.6023 -1.7185 1.2971 34 1 3.7892 -1.6208 3.1132 35 1 3.4757 -2.8268 1.8425 36 1 5.6949 -2.3650 0.8473 37 1 5.8587 -2.8565 2.5506 38 1 7.2793 -0.8741 2.0101 39 1 6.0443 -0.4923 3.2345 40 1 5.8543 0.0917 0.2432 41 1 6.1272 1.2903 1.5313 42 1 3.7386 1.2275 0.8454 43 1 3.9408 0.7167 2.5383 44 1 2.1998 -1.6430 -1.1662 45 1 2.9675 0.9653 -4.6553 46 1 2.5480 -1.2941 -6.2578 47 1 4.2356 -1.3600 -5.6958 48 1 1.4970 -0.5931 -9.8118 49 1 5.3226 1.9512 -7.1866 50 1 5.8423 0.5672 -6.0838 51 1 5.2573 -1.1022 -7.9025 52 1 4.7372 0.2809 -9.0058 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321507642.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:46 Heat of formation + Delta-G solvation = -57.816272 kcal Electronic energy + Delta-G solvation = -30155.686879 eV Core-core repulsion = 26155.247659 eV Total energy + Delta-G solvation = -4000.439220 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -40.29963 -39.30597 -38.11433 -36.65957 -36.04513 -33.58752 -33.00170 -31.94348 -31.14038 -30.81563 -27.00874 -26.67432 -25.43649 -23.97373 -23.36677 -22.99096 -21.16879 -20.71948 -20.01121 -19.80151 -19.46184 -17.92936 -16.67137 -16.45555 -16.08786 -15.66061 -15.29918 -15.01357 -14.85180 -14.66926 -14.54071 -14.37175 -14.00413 -13.83690 -13.66309 -13.52303 -13.20065 -12.99428 -12.72194 -12.62927 -12.45348 -12.09833 -11.97732 -11.81404 -11.58657 -11.46175 -11.29867 -11.10850 -10.97643 -10.97120 -10.92496 -10.65578 -10.49861 -10.48884 -10.22046 -9.57338 -9.12780 -9.05807 -9.03930 -8.59557 -8.49736 -8.32829 -8.13854 -6.06324 -4.15652 1.92831 2.81579 3.27644 3.36815 3.40969 3.51087 3.73603 4.17419 4.38429 4.42037 4.51843 4.63017 4.69882 4.88835 4.96236 5.01927 5.09989 5.12851 5.15505 5.21546 5.26794 5.31231 5.33111 5.38582 5.45071 5.51036 5.57127 5.67734 5.69081 5.81036 5.90514 5.93273 6.00316 6.03218 6.13685 6.32508 6.44363 6.44857 6.52318 6.70993 6.78244 6.79802 6.81977 7.08473 7.11679 7.35181 7.42014 7.54385 7.83989 8.00527 8.28063 8.34934 8.62657 8.86855 9.51902 11.00786 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014855 B = 0.002727 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.419743 B =10264.331228 C =11260.614596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.146 3.854 3 H 0.091 0.909 4 C 0.046 3.954 5 N -0.534 5.534 6 C 0.058 3.942 7 C -0.118 4.118 8 C -0.120 4.120 9 C -0.118 4.118 10 C 0.056 3.944 11 N -0.684 5.684 12 C 0.511 3.489 13 O -0.527 6.527 14 C 0.496 3.504 15 O -0.541 6.541 16 N -0.669 5.669 17 C 0.160 3.840 18 C 0.022 3.978 19 C -0.499 4.499 20 H 0.062 0.938 21 C 0.073 3.927 22 N -0.876 5.876 23 Si 0.890 3.110 24 H -0.271 1.271 25 H -0.284 1.284 26 H -0.283 1.283 27 C -0.210 4.210 28 C -0.140 4.140 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.052 0.948 33 H 0.081 0.919 34 H 0.030 0.970 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.056 0.944 40 H 0.073 0.927 41 H 0.065 0.935 42 H 0.076 0.924 43 H 0.031 0.969 44 H 0.412 0.588 45 H 0.413 0.587 46 H 0.072 0.928 47 H 0.047 0.953 48 H 0.261 0.739 49 H 0.079 0.921 50 H 0.065 0.935 51 H 0.064 0.936 52 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.063 -2.076 23.887 24.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.041 3.959 3 H 0.109 0.891 4 C -0.083 4.083 5 N -0.259 5.259 6 C -0.070 4.070 7 C -0.156 4.156 8 C -0.158 4.158 9 C -0.156 4.156 10 C -0.072 4.072 11 N -0.337 5.337 12 C 0.292 3.708 13 O -0.403 6.403 14 C 0.275 3.725 15 O -0.420 6.420 16 N -0.318 5.318 17 C 0.038 3.962 18 C 0.021 3.979 19 C -0.537 4.537 20 H 0.080 0.920 21 C -0.131 4.131 22 N -0.512 5.512 23 Si 0.718 3.282 24 H -0.196 1.196 25 H -0.211 1.211 26 H -0.209 1.209 27 C -0.247 4.247 28 C -0.178 4.178 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.070 0.930 33 H 0.099 0.901 34 H 0.048 0.952 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.074 0.926 40 H 0.092 0.908 41 H 0.084 0.916 42 H 0.095 0.905 43 H 0.049 0.951 44 H 0.248 0.752 45 H 0.249 0.751 46 H 0.091 0.909 47 H 0.065 0.935 48 H 0.071 0.929 49 H 0.097 0.903 50 H 0.083 0.917 51 H 0.082 0.918 52 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 3.007 -2.349 23.253 23.564 hybrid contribution -1.010 0.707 0.419 1.302 sum 1.997 -1.642 23.673 23.814 Atomic orbital electron populations 1.22181 0.94750 1.02535 1.02898 1.20990 0.93644 0.97700 0.83608 0.89146 1.22452 0.88088 1.01321 0.96421 1.61827 1.04737 1.05970 1.53342 1.22096 0.96233 0.94807 0.93885 1.21590 0.94063 0.97227 1.02713 1.21571 0.99770 0.95314 0.99155 1.21578 0.94376 0.98571 1.01059 1.22132 0.95140 0.91170 0.98773 1.45527 1.65582 1.13389 1.09169 1.20408 0.78538 0.87124 0.84770 1.90735 1.50497 1.14725 1.84305 1.19984 0.80300 0.87477 0.84708 1.90703 1.53450 1.13938 1.83918 1.45875 1.64129 1.11820 1.09995 1.21176 0.99128 0.94274 0.81661 1.19033 0.87907 0.96196 0.94783 1.20433 1.11927 1.01112 1.20199 0.91960 1.24987 0.97264 0.94773 0.96074 1.69994 1.39459 1.20913 1.20827 0.86566 0.82758 0.80654 0.78262 1.19562 1.21050 1.20939 1.23032 1.01461 0.98390 1.01836 1.22471 1.03597 0.96283 0.95443 0.92132 0.91605 0.91440 0.93024 0.90078 0.95162 0.90680 0.90759 0.91674 0.91835 0.92555 0.90830 0.91604 0.90536 0.95069 0.75159 0.75104 0.90933 0.93507 0.92938 0.90254 0.91655 0.91761 0.89426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.53 9.51 37.15 0.35 -1.18 16 2 C 0.15 1.50 2.64 -67.93 -0.18 1.32 16 3 H 0.09 1.07 6.35 -51.93 -0.33 0.74 16 4 C 0.05 0.36 4.59 -3.82 -0.02 0.34 16 5 N -0.53 -4.80 4.30 -234.66 -1.01 -5.81 16 6 C 0.06 0.44 5.43 -3.83 -0.02 0.42 16 7 C -0.12 -0.91 6.09 -26.65 -0.16 -1.07 16 8 C -0.12 -0.91 6.00 -26.61 -0.16 -1.07 16 9 C -0.12 -1.03 6.09 -26.65 -0.16 -1.20 16 10 C 0.06 0.50 5.29 -3.83 -0.02 0.48 16 11 N -0.68 -8.85 4.76 -54.24 -0.26 -9.11 16 12 C 0.51 8.55 7.88 -11.59 -0.09 8.46 16 13 O -0.53 -9.81 16.10 5.50 0.09 -9.72 16 14 C 0.50 9.56 7.88 -11.59 -0.09 9.47 16 15 O -0.54 -11.26 16.47 5.50 0.09 -11.17 16 16 N -0.67 -13.71 5.46 -60.73 -0.33 -14.04 16 17 C 0.16 3.62 5.53 -4.04 -0.02 3.60 16 18 C 0.02 0.51 1.48 -155.66 -0.23 0.28 16 19 C -0.50 -13.08 8.59 -34.44 -0.30 -13.38 16 20 H 0.06 1.63 7.82 -52.48 -0.41 1.22 16 21 C 0.07 1.95 5.43 -17.82 -0.10 1.86 16 22 N -0.88 -24.26 12.64 55.43 0.70 -23.56 16 23 Si 0.89 20.95 29.54 -169.99 -5.02 15.93 16 24 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 25 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 26 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 27 C -0.21 -4.44 9.96 -26.69 -0.27 -4.70 16 28 C -0.14 -3.20 9.14 -26.69 -0.24 -3.44 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.05 0.35 8.00 -51.93 -0.42 -0.06 16 33 H 0.08 0.57 7.79 -51.93 -0.40 0.16 16 34 H 0.03 0.22 8.14 -51.93 -0.42 -0.21 16 35 H 0.07 0.54 7.93 -51.93 -0.41 0.13 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 40 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.08 0.77 6.82 -51.93 -0.35 0.42 16 43 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 44 H 0.41 5.15 8.12 -40.82 -0.33 4.82 16 45 H 0.41 8.42 7.83 -40.82 -0.32 8.10 16 46 H 0.07 1.83 8.14 -51.93 -0.42 1.41 16 47 H 0.05 1.03 8.05 -51.93 -0.42 0.61 16 48 H 0.26 6.93 8.32 -40.82 -0.34 6.59 16 49 H 0.08 1.66 8.14 -51.93 -0.42 1.23 16 50 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 51 H 0.06 1.39 8.14 -51.94 -0.42 0.96 16 52 H 0.09 2.15 8.14 -51.93 -0.42 1.73 16 LS Contribution 419.42 15.07 6.32 6.32 Total: -1.00 -29.32 419.42 -10.42 -39.74 By element: Atomic # 1 Polarization: 20.54 SS G_CDS: -9.29 Total: 11.25 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: -1.71 Total: 0.18 kcal Atomic # 7 Polarization: -51.63 SS G_CDS: -0.90 Total: -52.53 kcal Atomic # 8 Polarization: -21.07 SS G_CDS: 0.18 Total: -20.89 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -29.32 -10.42 -39.74 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321507642.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.080 kcal (2) G-P(sol) polarization free energy of solvation -29.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds