Wall clock time and date at job start Tue Mar 31 2020 20:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.47078 * 2 1 4 4 C 1.52997 * 109.47114 * 239.99939 * 2 1 3 5 5 N 1.46902 * 109.47243 * 185.18733 * 4 2 1 6 6 C 1.46906 * 111.00101 * 163.93412 * 5 4 2 7 7 C 1.46894 * 110.99980 * 287.89159 * 5 4 2 8 8 C 1.50701 * 109.47255 * 169.99825 * 7 5 4 9 9 O 1.21286 * 120.00014 * 359.97438 * 8 7 5 10 10 N 1.34777 * 119.99996 * 179.97438 * 8 7 5 11 11 C 1.37099 * 119.99966 * 179.97438 * 10 8 7 12 12 H 1.07995 * 119.99893 * 0.02562 * 11 10 8 13 13 C 1.38952 * 120.00105 * 180.02562 * 11 10 8 14 14 N 1.31416 * 119.99644 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00156 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47045 * 59.99308 * 15 13 11 17 17 H 1.48496 * 109.47272 * 179.97438 * 15 13 11 18 18 H 1.48507 * 109.46745 * 299.99557 * 15 13 11 19 19 N 1.46501 * 109.46840 * 120.00087 * 2 1 3 20 20 C 1.34772 * 119.99869 * 274.60253 * 19 2 1 21 21 O 1.21283 * 120.00412 * 0.02562 * 20 19 2 22 22 C 1.50707 * 120.00148 * 180.02562 * 20 19 2 23 23 C 1.53946 * 113.57992 * 179.97438 * 22 20 19 24 24 C 1.52914 * 86.77825 * 139.41263 * 23 22 20 25 25 C 1.52912 * 121.12995 * 100.82212 * 24 23 22 26 26 C 1.53954 * 86.78254 * 100.81749 * 25 24 23 27 27 C 1.53073 * 121.06881 * 209.35495 * 24 23 22 28 28 C 1.52900 * 88.04526 * 335.10347 * 24 23 22 29 29 H 1.09003 * 109.47235 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47035 * 300.00214 * 1 2 3 31 31 H 1.09003 * 109.46657 * 60.00292 * 1 2 3 32 32 H 1.08999 * 109.47230 * 305.18554 * 4 2 1 33 33 H 1.08996 * 109.47182 * 65.18362 * 4 2 1 34 34 H 1.08996 * 109.47013 * 54.89462 * 6 5 4 35 35 H 1.09000 * 109.46430 * 174.89553 * 6 5 4 36 36 H 1.08993 * 109.46925 * 294.89521 * 6 5 4 37 37 H 1.09000 * 109.46939 * 289.99893 * 7 5 4 38 38 H 1.08996 * 109.47374 * 49.99726 * 7 5 4 39 39 H 0.97005 * 120.00224 * 0.02562 * 10 8 7 40 40 H 0.97000 * 119.99313 * 180.02562 * 14 13 11 41 41 H 0.97003 * 120.00046 * 94.60142 * 19 2 1 42 42 H 1.08996 * 112.82033 * 48.90732 * 22 20 19 43 43 H 1.09000 * 113.66175 * 24.94944 * 23 22 20 44 44 H 1.08997 * 113.66421 * 253.88255 * 23 22 20 45 45 H 1.08996 * 113.66464 * 346.34416 * 25 24 23 46 46 H 1.09005 * 113.74456 * 215.29532 * 25 24 23 47 47 H 1.09008 * 113.57748 * 139.33210 * 26 25 24 48 48 H 1.08998 * 113.57779 * 270.04857 * 26 25 24 49 49 H 1.09000 * 113.66031 * 144.67900 * 27 24 23 50 50 H 1.09005 * 113.70495 * 13.58555 * 27 24 23 51 51 H 1.08999 * 113.66680 * 139.37484 * 28 24 23 52 52 H 1.09002 * 113.66247 * 270.42353 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 3.5037 -0.8307 -1.1883 6 6 3.9976 -1.8272 -2.1480 7 6 4.1389 0.4749 -1.4112 8 6 5.6104 0.3772 -1.1011 9 8 6.0834 -0.6764 -0.7305 10 7 6.4009 1.4604 -1.2358 11 6 7.7395 1.3716 -0.9532 12 1 8.1606 0.4335 -0.6232 13 6 8.5544 2.4886 -1.0915 14 7 8.0420 3.6299 -1.4936 15 14 10.3784 2.3674 -0.7072 16 1 11.0048 1.3542 -1.5939 17 1 11.0207 3.6870 -0.9332 18 1 10.5598 1.9643 0.7106 19 7 2.0183 -0.6906 1.1962 20 6 2.1546 -0.0164 2.3551 21 8 1.8726 1.1620 2.4080 22 6 2.6574 -0.7267 3.5856 23 6 2.7564 0.1823 4.8241 24 6 2.2070 -0.9975 5.6270 25 6 3.1323 -1.8884 6.4566 26 6 2.6548 -1.0923 7.6848 27 6 1.3746 -0.7729 6.8918 28 6 1.5648 -1.5087 4.3370 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8901 32 1 1.6028 -1.7186 -1.2969 33 1 1.7545 -0.1567 -2.1367 34 1 3.6344 -1.5817 -3.1459 35 1 5.0876 -1.8236 -2.1468 36 1 3.6372 -2.8156 -1.8632 37 1 4.0057 0.7708 -2.4518 38 1 3.6791 1.2186 -0.7603 39 1 6.0226 2.3032 -1.5319 40 1 8.6110 4.4095 -1.5905 41 1 2.2435 -1.6332 1.1541 42 1 3.5600 -1.3084 3.3987 43 1 2.0847 1.0401 4.7920 44 1 3.7789 0.4526 5.0878 45 1 4.1898 -1.7514 6.2306 46 1 2.8344 -2.9368 6.4720 47 1 2.4796 -1.7116 8.5646 48 1 3.2648 -0.2150 7.8999 49 1 0.5804 -1.5069 7.0288 50 1 1.0297 0.2540 7.0129 51 1 1.6354 -2.5892 4.2115 52 1 0.5583 -1.1262 4.1680 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322223791.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:36 Heat of formation + Delta-G solvation = -53.109566 kcal Electronic energy + Delta-G solvation = -30152.369383 eV Core-core repulsion = 26152.134262 eV Total energy + Delta-G solvation = -4000.235122 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.80808 -40.56351 -39.95565 -38.23903 -36.13934 -35.56987 -35.45222 -33.28807 -31.99775 -29.60418 -27.97106 -26.89741 -26.68692 -26.60818 -26.40477 -23.81702 -22.92817 -21.75775 -20.91919 -20.82960 -19.85624 -18.88721 -18.24227 -17.79533 -17.27515 -16.68397 -16.62477 -16.33259 -16.26370 -16.04821 -15.76388 -15.51986 -15.24665 -15.06892 -14.92657 -14.31042 -14.01266 -13.72429 -13.66653 -13.50255 -13.43184 -13.26915 -13.11028 -12.95083 -12.92858 -12.91606 -12.74104 -12.67350 -12.47527 -12.38449 -12.14301 -11.91969 -11.81993 -11.70013 -11.44310 -11.21228 -11.02538 -10.96718 -10.44165 -10.27202 -10.01480 -9.92717 -9.20903 -8.47307 -5.96369 1.38159 1.39334 1.50823 1.72611 2.04217 2.26459 2.35553 2.79184 3.19302 3.36455 3.45144 3.53199 3.60920 3.71038 3.81121 3.87679 3.98383 4.11798 4.18507 4.27835 4.31949 4.41938 4.44886 4.50429 4.57316 4.57735 4.66111 4.72247 4.75261 4.78978 4.79975 4.83918 4.88287 4.93224 5.00297 5.05537 5.09074 5.11362 5.12484 5.21593 5.29318 5.37276 5.39051 5.56454 5.58774 5.65356 5.87172 6.05912 6.21213 6.58741 6.71286 7.11425 7.40025 7.54929 8.10105 8.70261 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.008843 B = 0.003162 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3165.690140 B = 8852.544811 C =10964.109623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.141 3.859 3 H 0.053 0.947 4 C 0.050 3.950 5 N -0.529 5.529 6 C 0.029 3.971 7 C 0.058 3.942 8 C 0.444 3.556 9 O -0.608 6.608 10 N -0.578 5.578 11 C -0.332 4.332 12 H 0.081 0.919 13 C -0.016 4.016 14 N -0.924 5.924 15 Si 0.994 3.006 16 H -0.269 1.269 17 H -0.271 1.271 18 H -0.272 1.272 19 N -0.695 5.695 20 C 0.519 3.481 21 O -0.593 6.593 22 C -0.136 4.136 23 C -0.101 4.101 24 C -0.103 4.103 25 C -0.116 4.116 26 C -0.138 4.138 27 C -0.125 4.125 28 C -0.091 4.091 29 H 0.079 0.921 30 H 0.042 0.958 31 H 0.079 0.921 32 H 0.110 0.890 33 H 0.064 0.936 34 H 0.032 0.968 35 H 0.051 0.949 36 H 0.086 0.914 37 H 0.066 0.934 38 H 0.087 0.913 39 H 0.393 0.607 40 H 0.277 0.723 41 H 0.412 0.588 42 H 0.114 0.886 43 H 0.077 0.923 44 H 0.061 0.939 45 H 0.061 0.939 46 H 0.101 0.899 47 H 0.080 0.920 48 H 0.071 0.929 49 H 0.097 0.903 50 H 0.060 0.940 51 H 0.097 0.903 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.120 -11.968 8.879 23.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.036 3.964 3 H 0.071 0.929 4 C -0.077 4.077 5 N -0.253 5.253 6 C -0.119 4.119 7 C -0.074 4.074 8 C 0.231 3.769 9 O -0.494 6.494 10 N -0.215 5.215 11 C -0.461 4.461 12 H 0.099 0.901 13 C -0.215 4.215 14 N -0.565 5.565 15 Si 0.817 3.183 16 H -0.194 1.194 17 H -0.196 1.196 18 H -0.198 1.198 19 N -0.345 5.345 20 C 0.307 3.693 21 O -0.474 6.474 22 C -0.158 4.158 23 C -0.138 4.138 24 C -0.103 4.103 25 C -0.153 4.153 26 C -0.176 4.176 27 C -0.162 4.162 28 C -0.129 4.129 29 H 0.097 0.903 30 H 0.061 0.939 31 H 0.098 0.902 32 H 0.128 0.872 33 H 0.082 0.918 34 H 0.051 0.949 35 H 0.070 0.930 36 H 0.104 0.896 37 H 0.084 0.916 38 H 0.105 0.895 39 H 0.226 0.774 40 H 0.086 0.914 41 H 0.248 0.752 42 H 0.132 0.868 43 H 0.096 0.904 44 H 0.079 0.921 45 H 0.080 0.920 46 H 0.119 0.881 47 H 0.099 0.901 48 H 0.090 0.910 49 H 0.115 0.885 50 H 0.079 0.921 51 H 0.115 0.885 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -17.789 -11.824 9.554 23.400 hybrid contribution 1.006 0.996 -1.032 1.752 sum -16.783 -10.828 8.522 21.715 Atomic orbital electron populations 1.22038 0.93076 1.03328 1.02349 1.21000 0.94775 0.96149 0.84513 0.92909 1.22555 0.86312 1.02740 0.96142 1.61492 1.05435 1.05844 1.52532 1.22411 1.01185 0.95682 0.92580 1.21699 0.91454 0.93419 1.00795 1.20682 0.89206 0.84102 0.82899 1.90445 1.76729 1.29912 1.52303 1.41975 1.08200 1.11355 1.59968 1.19631 0.84538 0.97812 1.44141 0.90110 1.26081 1.04735 0.94127 0.96553 1.69686 1.38463 1.01338 1.46977 0.84981 0.76669 0.77808 0.78844 1.19362 1.19553 1.19763 1.45756 1.65860 1.14295 1.08548 1.20879 0.76388 0.86631 0.85451 1.90639 1.53077 1.17833 1.85880 1.22758 1.01799 0.99851 0.91354 1.22538 1.01212 0.96607 0.93480 1.22411 0.98337 0.96547 0.93021 1.22715 0.98545 0.99014 0.95030 1.22805 0.97271 1.00250 0.97261 1.22804 0.97020 1.01878 0.94517 1.22640 0.96415 1.00497 0.93346 0.90252 0.93892 0.90210 0.87189 0.91819 0.94910 0.93018 0.89580 0.91631 0.89475 0.77411 0.91361 0.75239 0.86830 0.90420 0.92053 0.92038 0.88085 0.90142 0.91009 0.88460 0.92100 0.88472 0.89882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.70 9.49 71.98 0.68 -2.02 16 2 C 0.14 3.34 2.52 44.99 0.11 3.45 16 3 H 0.05 1.63 6.22 -2.39 -0.01 1.62 16 4 C 0.05 1.04 4.53 86.30 0.39 1.43 16 5 N -0.53 -15.84 4.17 -927.08 -3.87 -19.71 16 6 C 0.03 0.84 9.19 127.69 1.17 2.01 16 7 C 0.06 2.10 5.30 85.56 0.45 2.55 16 8 C 0.44 21.69 7.42 87.66 0.65 22.34 16 9 O -0.61 -33.29 13.96 -3.05 -0.04 -33.33 16 10 N -0.58 -30.92 5.29 -306.99 -1.62 -32.54 16 11 C -0.33 -19.33 9.68 84.04 0.81 -18.52 16 12 H 0.08 4.95 7.16 -2.91 -0.02 4.93 16 13 C -0.02 -0.86 5.50 84.93 0.47 -0.39 16 14 N -0.92 -51.73 13.05 21.66 0.28 -51.45 16 15 Si 0.99 44.00 29.55 68.60 2.03 46.02 16 16 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 17 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 18 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 19 N -0.69 -17.24 4.79 -442.53 -2.12 -19.36 16 20 C 0.52 15.57 7.33 87.66 0.64 16.21 16 21 O -0.59 -22.78 15.55 -3.04 -0.05 -22.82 16 22 C -0.14 -3.31 4.15 -10.90 -0.05 -3.36 16 23 C -0.10 -2.53 7.17 30.89 0.22 -2.31 16 24 C -0.10 -1.88 1.11 -52.26 -0.06 -1.94 16 25 C -0.12 -1.82 7.84 30.89 0.24 -1.57 16 26 C -0.14 -2.05 8.08 31.23 0.25 -1.80 16 27 C -0.12 -1.94 7.85 30.94 0.24 -1.70 16 28 C -0.09 -1.59 7.39 30.88 0.23 -1.37 16 29 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.11 1.67 7.99 -2.39 -0.02 1.65 16 33 H 0.06 1.17 8.05 -2.39 -0.02 1.15 16 34 H 0.03 0.81 8.13 -2.39 -0.02 0.79 16 35 H 0.05 1.97 5.79 -2.39 -0.01 1.95 16 36 H 0.09 2.00 8.14 -2.39 -0.02 1.99 16 37 H 0.07 2.13 8.12 -2.39 -0.02 2.11 16 38 H 0.09 3.19 6.50 -2.39 -0.02 3.18 16 39 H 0.39 20.40 7.90 -92.70 -0.73 19.67 16 40 H 0.28 14.55 8.31 -92.71 -0.77 13.78 16 41 H 0.41 8.61 8.61 -92.71 -0.80 7.81 16 42 H 0.11 2.75 8.14 -2.39 -0.02 2.73 16 43 H 0.08 2.24 7.42 -2.39 -0.02 2.23 16 44 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 45 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 46 H 0.10 1.25 8.14 -2.38 -0.02 1.23 16 47 H 0.08 0.96 8.14 -2.38 -0.02 0.94 16 48 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 49 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 50 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 51 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 52 H 0.08 1.49 8.09 -2.39 -0.02 1.48 16 Total: -1.00 -73.70 416.38 0.47 -73.24 By element: Atomic # 1 Polarization: 47.55 SS G_CDS: -0.61 Total: 46.94 kcal Atomic # 6 Polarization: 6.55 SS G_CDS: 6.47 Total: 13.02 kcal Atomic # 7 Polarization: -115.74 SS G_CDS: -7.33 Total: -123.07 kcal Atomic # 8 Polarization: -56.06 SS G_CDS: -0.09 Total: -56.15 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.02 kcal Total: -73.70 0.47 -73.24 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322223791.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.128 kcal (2) G-P(sol) polarization free energy of solvation -73.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds