Wall clock time and date at job start Tue Mar 31 2020 19:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.52999 * 109.46623 * 119.99792 * 2 1 3 5 5 C 1.53003 * 109.47015 * 184.99741 * 4 2 1 6 6 C 1.52993 * 109.47495 * 180.02562 * 5 4 2 7 7 N 1.46896 * 109.47494 * 180.02562 * 6 5 4 8 8 C 1.46900 * 111.00455 * 180.02562 * 7 6 5 9 9 C 1.50699 * 109.47518 * 179.97438 * 8 7 6 10 10 O 1.21291 * 119.99615 * 359.97438 * 9 8 7 11 11 N 1.34776 * 120.00271 * 180.02562 * 9 8 7 12 12 C 1.37098 * 120.00238 * 180.02562 * 11 9 8 13 13 H 1.08001 * 119.99355 * 359.97438 * 12 11 9 14 14 C 1.38947 * 119.99916 * 179.97438 * 12 11 9 15 15 N 1.31416 * 119.99669 * 179.97438 * 14 12 11 16 16 Si 1.86797 * 119.99978 * 359.97438 * 14 12 11 17 17 H 1.48500 * 109.47115 * 90.00517 * 16 14 12 18 18 H 1.48513 * 109.46787 * 209.99998 * 16 14 12 19 19 H 1.48494 * 109.47293 * 329.99827 * 16 14 12 20 20 N 1.46496 * 109.46995 * 239.99855 * 2 1 3 21 21 C 1.34779 * 119.99965 * 85.00573 * 20 2 1 22 22 O 1.21276 * 120.00091 * 359.97438 * 21 20 2 23 23 C 1.50698 * 119.99670 * 179.97438 * 21 20 2 24 24 H 1.08998 * 115.52918 * 34.50025 * 23 21 20 25 25 C 1.53003 * 117.45663 * 179.97438 * 23 21 20 26 26 H 1.08994 * 119.30274 * 356.29225 * 25 23 21 27 27 C 1.54273 * 118.19777 * 201.21336 * 25 23 21 28 28 C 1.54888 * 104.19703 * 272.21335 * 27 25 23 29 29 C 1.54892 * 102.74943 * 37.93990 * 28 27 25 30 30 C 1.53000 * 117.45941 * 249.03752 * 23 21 20 31 31 H 1.08995 * 119.29996 * 3.71454 * 30 23 21 32 32 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 33 33 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 35 35 H 1.08994 * 109.47465 * 305.00017 * 4 2 1 36 36 H 1.08998 * 109.47565 * 65.00449 * 4 2 1 37 37 H 1.08999 * 109.47145 * 300.00897 * 5 4 2 38 38 H 1.09000 * 109.46883 * 59.99966 * 5 4 2 39 39 H 1.08999 * 109.47626 * 300.00565 * 6 5 4 40 40 H 1.09000 * 109.47115 * 60.00069 * 6 5 4 41 41 H 1.00898 * 111.00143 * 56.04274 * 7 6 5 42 42 H 1.09001 * 109.47154 * 300.00168 * 8 7 6 43 43 H 1.09006 * 109.46928 * 59.99645 * 8 7 6 44 44 H 0.97004 * 119.99519 * 359.97438 * 11 9 8 45 45 H 0.96999 * 119.99873 * 179.97438 * 15 14 12 46 46 H 0.97003 * 119.99991 * 264.99646 * 20 2 1 47 47 H 1.08998 * 110.48157 * 30.88916 * 27 25 23 48 48 H 1.08995 * 110.48308 * 153.53465 * 27 25 23 49 49 H 1.09001 * 110.75752 * 279.63036 * 28 27 25 50 50 H 1.09000 * 110.91272 * 156.32734 * 28 27 25 51 51 H 1.08990 * 110.48779 * 203.37675 * 29 28 27 52 52 H 1.09004 * 110.59795 * 80.78942 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5648 -0.6134 1.3138 6 6 4.0748 -1.3351 2.5627 7 7 5.5388 -1.2310 2.6249 8 6 6.0652 -1.9147 3.8138 9 6 7.5665 -1.7874 3.8431 10 8 8.1414 -1.1865 2.9601 11 7 8.2704 -2.3420 4.8497 12 6 9.6362 -2.2257 4.8767 13 1 10.1480 -1.6900 4.0909 14 6 10.3617 -2.7970 5.9148 15 7 11.6709 -2.6859 5.9403 16 14 9.4762 -3.7229 7.2742 17 1 9.3566 -5.1553 6.9009 18 1 10.2471 -3.6035 8.5379 19 1 8.1212 -3.1462 7.4646 20 7 2.0184 -0.6906 -1.1961 21 6 2.1472 -0.0183 -2.3571 22 8 1.8584 1.1584 -2.4117 23 6 2.6500 -0.7286 -3.5874 24 1 2.3503 -1.7722 -3.6827 25 6 2.7731 0.0902 -4.8740 26 1 2.4414 1.1284 -4.8794 27 6 2.7934 -0.6646 -6.2193 28 6 4.2886 -1.0015 -6.4433 29 6 4.7793 -1.3448 -5.0149 30 6 4.0360 -0.3427 -4.1079 31 1 4.6345 0.3766 -3.5489 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 -0.3633 0.5139 0.8900 35 1 1.6053 -0.2617 2.1370 36 1 1.7516 -1.7715 1.2057 37 1 3.9994 -1.0728 0.4260 38 1 3.8532 0.4369 1.3574 39 1 3.6402 -0.8760 3.4506 40 1 3.7865 -2.3853 2.5186 41 1 5.8340 -0.2664 2.6017 42 1 5.6441 -1.4603 4.7106 43 1 5.7909 -2.9691 3.7777 44 1 7.8105 -2.8228 5.5556 45 1 12.1774 -3.0844 6.6652 46 1 2.2491 -1.6318 -1.1525 47 1 2.2023 -1.5780 -6.1531 48 1 2.4221 -0.0259 -7.0206 49 1 4.8240 -0.1383 -6.8386 50 1 4.3989 -1.8596 -7.1063 51 1 5.8571 -1.2026 -4.9373 52 1 4.5107 -2.3682 -4.7526 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330778008.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:56:33 Heat of formation + Delta-G solvation = -64.919883 kcal Electronic energy + Delta-G solvation = -28244.015567 eV Core-core repulsion = 24243.268312 eV Total energy + Delta-G solvation = -4000.747255 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.74809 -39.02395 -38.49101 -37.03646 -35.55191 -33.94083 -32.73685 -32.01529 -31.64393 -30.52574 -28.60020 -27.48575 -25.35937 -24.65725 -23.28937 -21.66938 -21.36905 -20.85592 -20.41855 -20.01069 -19.36379 -18.31921 -17.81855 -16.71520 -16.21144 -15.78483 -15.59512 -15.47624 -14.99519 -14.79353 -14.57398 -14.31121 -14.01656 -13.90862 -13.56273 -13.44642 -13.37715 -13.15913 -13.00741 -12.78308 -12.53604 -12.24476 -12.03158 -11.85901 -11.80430 -11.69472 -11.51749 -11.49777 -11.37958 -11.22044 -11.17957 -10.98514 -10.80961 -10.60082 -10.46812 -10.25674 -9.97797 -9.89807 -9.57591 -9.34417 -8.59124 -8.19470 -8.13222 -6.31252 -3.82675 2.20926 2.79848 3.01821 3.06297 3.14352 3.37851 3.74017 4.00387 4.09787 4.11649 4.30505 4.37192 4.47080 4.68703 4.74055 4.75996 4.82424 4.83924 4.93272 5.00596 5.04942 5.08157 5.19693 5.20829 5.23617 5.29667 5.33124 5.34261 5.47386 5.48380 5.53454 5.61020 5.63382 5.65799 5.69085 5.73612 5.75956 5.81421 5.89242 5.91837 5.93029 6.00635 6.03084 6.16145 6.26681 7.11324 7.24176 7.57445 7.59153 7.98777 8.14497 8.59805 8.94886 9.42309 9.82818 10.81912 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.012614 B = 0.001842 C = 0.001646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2219.160226 B =15198.706620 C =17003.925894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.142 3.858 3 H 0.088 0.912 4 C -0.125 4.125 5 C -0.118 4.118 6 C 0.060 3.940 7 N -0.671 5.671 8 C 0.048 3.952 9 C 0.449 3.551 10 O -0.564 6.564 11 N -0.591 5.591 12 C -0.305 4.305 13 H 0.119 0.881 14 C 0.040 3.960 15 N -0.881 5.881 16 Si 0.881 3.119 17 H -0.271 1.271 18 H -0.277 1.277 19 H -0.270 1.270 20 N -0.719 5.719 21 C 0.546 3.454 22 O -0.541 6.541 23 C -0.166 4.166 24 H 0.119 0.881 25 C -0.132 4.132 26 H 0.121 0.879 27 C -0.096 4.096 28 C -0.124 4.124 29 C -0.097 4.097 30 C -0.134 4.134 31 H 0.116 0.884 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.065 0.935 35 H 0.078 0.922 36 H 0.070 0.930 37 H 0.074 0.926 38 H 0.063 0.937 39 H 0.025 0.975 40 H 0.069 0.931 41 H 0.350 0.650 42 H 0.044 0.956 43 H 0.086 0.914 44 H 0.370 0.630 45 H 0.273 0.727 46 H 0.402 0.598 47 H 0.068 0.932 48 H 0.073 0.927 49 H 0.071 0.929 50 H 0.070 0.930 51 H 0.076 0.924 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.941 0.242 -17.045 30.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.037 3.963 3 H 0.106 0.894 4 C -0.163 4.163 5 C -0.156 4.156 6 C -0.070 4.070 7 N -0.303 5.303 8 C -0.085 4.085 9 C 0.235 3.765 10 O -0.446 6.446 11 N -0.231 5.231 12 C -0.434 4.434 13 H 0.137 0.863 14 C -0.162 4.162 15 N -0.521 5.521 16 Si 0.707 3.293 17 H -0.196 1.196 18 H -0.202 1.202 19 H -0.196 1.196 20 N -0.370 5.370 21 C 0.333 3.667 22 O -0.418 6.418 23 C -0.187 4.187 24 H 0.137 0.863 25 C -0.151 4.151 26 H 0.139 0.861 27 C -0.134 4.134 28 C -0.161 4.161 29 C -0.135 4.135 30 C -0.153 4.153 31 H 0.134 0.866 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.097 0.903 36 H 0.088 0.912 37 H 0.093 0.907 38 H 0.081 0.919 39 H 0.043 0.957 40 H 0.088 0.912 41 H 0.170 0.830 42 H 0.061 0.939 43 H 0.105 0.895 44 H 0.203 0.797 45 H 0.084 0.916 46 H 0.236 0.764 47 H 0.087 0.913 48 H 0.091 0.909 49 H 0.089 0.911 50 H 0.089 0.911 51 H 0.095 0.905 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -24.426 0.929 -17.975 30.341 hybrid contribution -0.723 -0.717 2.167 2.395 sum -25.149 0.212 -15.808 29.705 Atomic orbital electron populations 1.22177 0.95296 1.02092 1.02572 1.20998 0.93785 0.97722 0.83761 0.89352 1.21871 0.96280 1.01124 0.97069 1.21559 0.94002 1.01096 0.98899 1.21973 0.88109 1.00505 0.96415 1.60049 1.08239 1.21570 1.40448 1.21700 0.94742 1.00260 0.91753 1.19733 0.88056 0.84545 0.84152 1.90566 1.71048 1.44956 1.38039 1.42211 1.07868 1.50200 1.22787 1.19436 0.79542 1.33753 1.10627 0.86288 1.25046 0.95456 0.97866 0.97868 1.69625 1.05061 1.44448 1.33013 0.86659 0.79529 0.80731 0.82377 1.19595 1.20188 1.19562 1.46010 1.67359 1.14212 1.09433 1.19595 0.76861 0.86606 0.83662 1.90693 1.50117 1.16002 1.84970 1.22366 1.02078 1.00530 0.93685 0.86290 1.23269 1.02025 1.00092 0.89699 0.86083 1.21998 0.96807 0.99670 0.94907 1.22706 0.95254 1.01482 0.96693 1.22012 1.00084 0.98099 0.93295 1.23271 0.88660 1.01909 1.01455 0.86579 0.92154 0.92465 0.91563 0.90308 0.91179 0.90743 0.91865 0.95658 0.91224 0.83034 0.93854 0.89549 0.79702 0.91621 0.76386 0.91288 0.90874 0.91065 0.91098 0.90544 0.91060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.19 9.48 37.16 0.35 -0.84 16 2 C 0.14 1.15 2.57 -67.93 -0.17 0.97 16 3 H 0.09 0.91 7.58 -51.93 -0.39 0.52 16 4 C -0.12 -0.87 4.75 -26.73 -0.13 -1.00 16 5 C -0.12 -1.12 5.36 -26.73 -0.14 -1.26 16 6 C 0.06 0.66 5.69 -3.83 -0.02 0.63 16 7 N -0.67 -10.37 6.12 -115.06 -0.70 -11.07 16 8 C 0.05 0.80 6.17 -4.98 -0.03 0.77 16 9 C 0.45 10.30 7.82 -10.99 -0.09 10.21 16 10 O -0.56 -15.34 15.78 5.55 0.09 -15.25 16 11 N -0.59 -14.17 5.09 -10.96 -0.06 -14.22 16 12 C -0.30 -8.68 10.16 -14.93 -0.15 -8.83 16 13 H 0.12 3.88 7.39 -52.49 -0.39 3.49 16 14 C 0.04 1.11 5.50 -17.47 -0.10 1.02 16 15 N -0.88 -25.83 13.96 55.50 0.77 -25.05 16 16 Si 0.88 19.36 27.74 -169.99 -4.71 14.65 16 17 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 18 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 19 H -0.27 -5.40 6.52 56.52 0.37 -5.04 16 20 N -0.72 -5.78 4.53 -53.81 -0.24 -6.02 16 21 C 0.55 5.65 7.58 -10.99 -0.08 5.56 16 22 O -0.54 -7.61 15.99 5.56 0.09 -7.52 16 23 C -0.17 -1.36 5.73 -91.77 -0.53 -1.89 16 24 H 0.12 0.75 8.14 -51.93 -0.42 0.33 16 25 C -0.13 -1.10 6.39 -89.47 -0.57 -1.67 16 26 H 0.12 1.19 7.78 -51.93 -0.40 0.78 16 27 C -0.10 -0.60 6.63 -25.07 -0.17 -0.77 16 28 C -0.12 -0.74 6.91 -24.74 -0.17 -0.91 16 29 C -0.10 -0.67 6.62 -25.08 -0.17 -0.84 16 30 C -0.13 -1.13 6.64 -89.48 -0.59 -1.73 16 31 H 0.12 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.07 0.78 7.75 -51.93 -0.40 0.38 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 40 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.35 5.70 8.43 -39.29 -0.33 5.37 16 42 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 44 H 0.37 7.76 5.76 -40.82 -0.24 7.52 16 45 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 46 H 0.40 2.41 8.60 -40.82 -0.35 2.06 16 47 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 49 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 50 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 51 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 52 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 422.10 15.07 6.36 6.36 Total: -1.00 -34.63 422.10 -10.45 -45.08 By element: Atomic # 1 Polarization: 22.89 SS G_CDS: -9.28 Total: 13.60 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: -2.76 Total: -0.55 kcal Atomic # 7 Polarization: -56.14 SS G_CDS: -0.23 Total: -56.37 kcal Atomic # 8 Polarization: -22.95 SS G_CDS: 0.18 Total: -22.77 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -4.71 Total: 14.65 kcal Total LS contribution 6.36 Total: 6.36 kcal Total: -34.63 -10.45 -45.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330778008.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.840 kcal (2) G-P(sol) polarization free energy of solvation -34.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds