Wall clock time and date at job start Tue Mar 31 2020 19:56:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.52999 * 109.46623 * 119.99792 * 2 1 3 5 5 C 1.53003 * 109.47015 * 184.99741 * 4 2 1 6 6 C 1.52993 * 109.47495 * 180.02562 * 5 4 2 7 7 N 1.46896 * 109.47494 * 180.02562 * 6 5 4 8 8 C 1.46900 * 111.00455 * 180.02562 * 7 6 5 9 9 C 1.50699 * 109.47518 * 179.97438 * 8 7 6 10 10 O 1.21291 * 119.99615 * 359.97438 * 9 8 7 11 11 N 1.34776 * 120.00271 * 180.02562 * 9 8 7 12 12 C 1.37098 * 120.00238 * 180.02562 * 11 9 8 13 13 H 1.08001 * 119.99355 * 359.97438 * 12 11 9 14 14 C 1.38947 * 119.99916 * 179.97438 * 12 11 9 15 15 N 1.31416 * 119.99669 * 179.97438 * 14 12 11 16 16 Si 1.86797 * 119.99978 * 359.97438 * 14 12 11 17 17 H 1.48500 * 109.47115 * 90.00517 * 16 14 12 18 18 H 1.48513 * 109.46787 * 209.99998 * 16 14 12 19 19 H 1.48494 * 109.47293 * 329.99827 * 16 14 12 20 20 N 1.46496 * 109.46995 * 239.99855 * 2 1 3 21 21 C 1.34779 * 119.99965 * 85.00573 * 20 2 1 22 22 O 1.21276 * 120.00091 * 359.97438 * 21 20 2 23 23 C 1.50698 * 119.99670 * 179.97438 * 21 20 2 24 24 H 1.08998 * 115.52918 * 34.50025 * 23 21 20 25 25 C 1.53003 * 117.45663 * 179.97438 * 23 21 20 26 26 H 1.08994 * 119.30274 * 356.29225 * 25 23 21 27 27 C 1.54273 * 118.19777 * 201.21336 * 25 23 21 28 28 C 1.54888 * 104.19703 * 272.21335 * 27 25 23 29 29 C 1.54892 * 102.74943 * 37.93990 * 28 27 25 30 30 C 1.53000 * 117.45941 * 249.03752 * 23 21 20 31 31 H 1.08995 * 119.29996 * 3.71454 * 30 23 21 32 32 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 33 33 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 35 35 H 1.08994 * 109.47465 * 305.00017 * 4 2 1 36 36 H 1.08998 * 109.47565 * 65.00449 * 4 2 1 37 37 H 1.08999 * 109.47145 * 300.00897 * 5 4 2 38 38 H 1.09000 * 109.46883 * 59.99966 * 5 4 2 39 39 H 1.08999 * 109.47626 * 300.00565 * 6 5 4 40 40 H 1.09000 * 109.47115 * 60.00069 * 6 5 4 41 41 H 1.00898 * 111.00143 * 56.04274 * 7 6 5 42 42 H 1.09001 * 109.47154 * 300.00168 * 8 7 6 43 43 H 1.09006 * 109.46928 * 59.99645 * 8 7 6 44 44 H 0.97004 * 119.99519 * 359.97438 * 11 9 8 45 45 H 0.96999 * 119.99873 * 179.97438 * 15 14 12 46 46 H 0.97003 * 119.99991 * 264.99646 * 20 2 1 47 47 H 1.08998 * 110.48157 * 30.88916 * 27 25 23 48 48 H 1.08995 * 110.48308 * 153.53465 * 27 25 23 49 49 H 1.09001 * 110.75752 * 279.63036 * 28 27 25 50 50 H 1.09000 * 110.91272 * 156.32734 * 28 27 25 51 51 H 1.08990 * 110.48779 * 203.37675 * 29 28 27 52 52 H 1.09004 * 110.59795 * 80.78942 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5648 -0.6134 1.3138 6 6 4.0748 -1.3351 2.5627 7 7 5.5388 -1.2310 2.6249 8 6 6.0652 -1.9147 3.8138 9 6 7.5665 -1.7874 3.8431 10 8 8.1414 -1.1865 2.9601 11 7 8.2704 -2.3420 4.8497 12 6 9.6362 -2.2257 4.8767 13 1 10.1480 -1.6900 4.0909 14 6 10.3617 -2.7970 5.9148 15 7 11.6709 -2.6859 5.9403 16 14 9.4762 -3.7229 7.2742 17 1 9.3566 -5.1553 6.9009 18 1 10.2471 -3.6035 8.5379 19 1 8.1212 -3.1462 7.4646 20 7 2.0184 -0.6906 -1.1961 21 6 2.1472 -0.0183 -2.3571 22 8 1.8584 1.1584 -2.4117 23 6 2.6500 -0.7286 -3.5874 24 1 2.3503 -1.7722 -3.6827 25 6 2.7731 0.0902 -4.8740 26 1 2.4414 1.1284 -4.8794 27 6 2.7934 -0.6646 -6.2193 28 6 4.2886 -1.0015 -6.4433 29 6 4.7793 -1.3448 -5.0149 30 6 4.0360 -0.3427 -4.1079 31 1 4.6345 0.3766 -3.5489 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 -0.3633 0.5139 0.8900 35 1 1.6053 -0.2617 2.1370 36 1 1.7516 -1.7715 1.2057 37 1 3.9994 -1.0728 0.4260 38 1 3.8532 0.4369 1.3574 39 1 3.6402 -0.8760 3.4506 40 1 3.7865 -2.3853 2.5186 41 1 5.8340 -0.2664 2.6017 42 1 5.6441 -1.4603 4.7106 43 1 5.7909 -2.9691 3.7777 44 1 7.8105 -2.8228 5.5556 45 1 12.1774 -3.0844 6.6652 46 1 2.2491 -1.6318 -1.1525 47 1 2.2023 -1.5780 -6.1531 48 1 2.4221 -0.0259 -7.0206 49 1 4.8240 -0.1383 -6.8386 50 1 4.3989 -1.8596 -7.1063 51 1 5.8571 -1.2026 -4.9373 52 1 4.5107 -2.3682 -4.7526 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330778008.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:56:32 Heat of formation + Delta-G solvation = -90.266295 kcal Electronic energy + Delta-G solvation = -28245.114670 eV Core-core repulsion = 24243.268312 eV Total energy + Delta-G solvation = -4001.846358 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.47743 -40.31676 -39.68037 -37.93952 -36.65348 -35.89890 -33.79648 -33.54332 -32.66986 -31.30667 -29.15078 -28.77872 -26.64854 -25.59814 -24.57859 -22.47064 -22.01208 -21.54134 -21.27797 -21.09482 -20.65596 -20.24201 -18.54877 -17.79310 -17.46224 -17.13986 -16.70163 -16.30733 -16.14443 -15.78953 -15.72785 -15.38755 -15.15899 -14.94340 -14.68479 -14.45884 -14.25215 -14.23531 -14.06281 -13.92833 -13.72779 -13.36417 -13.13697 -12.99092 -12.77397 -12.47108 -12.41925 -12.32233 -12.30554 -12.11643 -12.00745 -11.97771 -11.78102 -11.71311 -11.55126 -11.51438 -11.14001 -10.99151 -10.60882 -10.45252 -10.25730 -10.08891 -9.31122 -8.41818 -6.03163 1.30183 1.36079 1.41522 1.45026 1.94671 2.11689 2.23100 2.70528 2.72963 3.14225 3.38206 3.50573 3.68580 3.75194 3.77128 4.02544 4.08561 4.13435 4.17078 4.19832 4.24238 4.30527 4.40983 4.47198 4.48533 4.51218 4.57455 4.64159 4.67170 4.70858 4.81030 4.82014 4.87589 4.92045 4.97185 5.05899 5.14429 5.20547 5.21322 5.25564 5.26315 5.29357 5.40547 5.48122 5.52638 5.58095 5.90744 6.08585 6.37557 6.55003 6.59221 6.87248 7.24119 7.38815 7.95755 8.75895 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.012614 B = 0.001842 C = 0.001646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2219.160226 B =15198.706620 C =17003.925894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.140 3.860 3 H 0.059 0.941 4 C -0.111 4.111 5 C -0.113 4.113 6 C 0.063 3.937 7 N -0.693 5.693 8 C 0.063 3.937 9 C 0.446 3.554 10 O -0.617 6.617 11 N -0.590 5.590 12 C -0.330 4.330 13 H 0.053 0.947 14 C -0.017 4.017 15 N -0.935 5.935 16 Si 0.968 3.032 17 H -0.256 1.256 18 H -0.275 1.275 19 H -0.230 1.230 20 N -0.707 5.707 21 C 0.539 3.461 22 O -0.587 6.587 23 C -0.160 4.160 24 H 0.146 0.854 25 C -0.139 4.139 26 H 0.098 0.902 27 C -0.090 4.090 28 C -0.121 4.121 29 C -0.095 4.095 30 C -0.142 4.142 31 H 0.093 0.907 32 H 0.036 0.964 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.061 0.939 38 H 0.045 0.955 39 H 0.042 0.958 40 H 0.087 0.913 41 H 0.340 0.660 42 H 0.076 0.924 43 H 0.117 0.883 44 H 0.390 0.610 45 H 0.279 0.721 46 H 0.414 0.586 47 H 0.082 0.918 48 H 0.078 0.922 49 H 0.066 0.934 50 H 0.088 0.912 51 H 0.072 0.928 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.402 -2.750 -15.495 32.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.036 3.964 3 H 0.078 0.922 4 C -0.149 4.149 5 C -0.151 4.151 6 C -0.066 4.066 7 N -0.325 5.325 8 C -0.069 4.069 9 C 0.234 3.766 10 O -0.501 6.501 11 N -0.232 5.232 12 C -0.460 4.460 13 H 0.071 0.929 14 C -0.216 4.216 15 N -0.575 5.575 16 Si 0.787 3.213 17 H -0.180 1.180 18 H -0.200 1.200 19 H -0.154 1.154 20 N -0.358 5.358 21 C 0.326 3.674 22 O -0.468 6.468 23 C -0.180 4.180 24 H 0.164 0.836 25 C -0.157 4.157 26 H 0.116 0.884 27 C -0.128 4.128 28 C -0.158 4.158 29 C -0.132 4.132 30 C -0.161 4.161 31 H 0.111 0.889 32 H 0.056 0.944 33 H 0.093 0.907 34 H 0.097 0.903 35 H 0.111 0.889 36 H 0.111 0.889 37 H 0.080 0.920 38 H 0.064 0.936 39 H 0.061 0.939 40 H 0.105 0.895 41 H 0.158 0.842 42 H 0.094 0.906 43 H 0.134 0.866 44 H 0.226 0.774 45 H 0.089 0.911 46 H 0.251 0.749 47 H 0.101 0.899 48 H 0.097 0.903 49 H 0.085 0.915 50 H 0.106 0.894 51 H 0.091 0.909 52 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -27.924 -2.097 -16.418 32.460 hybrid contribution 0.421 0.330 1.596 1.683 sum -27.503 -1.767 -14.822 31.293 Atomic orbital electron populations 1.22110 0.94230 1.03011 1.02087 1.21008 0.94550 0.96550 0.84325 0.92236 1.21780 0.94058 1.02393 0.96691 1.21497 0.95823 0.99783 0.97988 1.22069 0.85223 1.01843 0.97422 1.60082 1.11208 1.20945 1.40273 1.21633 0.89112 1.02531 0.93661 1.21079 0.90953 0.82158 0.82434 1.90545 1.73025 1.46713 1.39863 1.42030 1.06129 1.51016 1.24009 1.19007 0.81958 1.34889 1.10115 0.92857 1.26167 0.96235 0.98340 1.00814 1.69813 1.07528 1.45676 1.34490 0.85327 0.79643 0.79235 0.77060 1.18008 1.20039 1.15374 1.45969 1.66255 1.14726 1.08843 1.20034 0.76344 0.86200 0.84804 1.90669 1.52300 1.18029 1.85761 1.22427 1.01539 1.01473 0.92589 0.83593 1.23305 1.01822 0.99497 0.91123 0.88386 1.22008 0.97271 0.99976 0.93508 1.22707 0.94824 1.02012 0.96270 1.22033 0.99629 0.98108 0.93427 1.23275 0.88788 1.02290 1.01772 0.88862 0.94430 0.90736 0.90314 0.88860 0.88915 0.92012 0.93570 0.93948 0.89497 0.84175 0.90625 0.86554 0.77386 0.91120 0.74870 0.89932 0.90286 0.91495 0.89391 0.90940 0.89845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.04 9.48 71.98 0.68 -1.35 16 2 C 0.14 2.14 2.57 44.99 0.12 2.25 16 3 H 0.06 1.27 7.58 -2.39 -0.02 1.26 16 4 C -0.11 -1.23 4.75 30.60 0.15 -1.09 16 5 C -0.11 -1.95 5.36 30.59 0.16 -1.79 16 6 C 0.06 1.17 5.69 86.30 0.49 1.66 16 7 N -0.69 -20.11 6.12 -517.95 -3.17 -23.29 16 8 C 0.06 1.88 6.17 85.56 0.53 2.41 16 9 C 0.45 20.26 7.82 87.66 0.69 20.95 16 10 O -0.62 -34.83 15.78 -3.06 -0.05 -34.88 16 11 N -0.59 -27.87 5.09 -306.99 -1.56 -29.43 16 12 C -0.33 -19.50 10.16 84.04 0.85 -18.65 16 13 H 0.05 3.76 7.39 -2.91 -0.02 3.74 16 14 C -0.02 -0.95 5.50 84.92 0.47 -0.48 16 15 N -0.93 -56.55 13.96 21.66 0.30 -56.24 16 16 Si 0.97 38.48 27.74 68.60 1.90 40.38 16 17 H -0.26 -9.59 7.11 99.48 0.71 -8.89 16 18 H -0.28 -10.88 7.11 99.48 0.71 -10.17 16 19 H -0.23 -7.64 6.52 99.48 0.65 -6.99 16 20 N -0.71 -10.82 4.53 -442.54 -2.00 -12.83 16 21 C 0.54 11.43 7.58 87.66 0.66 12.10 16 22 O -0.59 -17.64 15.99 -3.02 -0.05 -17.69 16 23 C -0.16 -2.57 5.73 -11.54 -0.07 -2.64 16 24 H 0.15 1.52 8.14 -2.39 -0.02 1.50 16 25 C -0.14 -2.37 6.39 -10.05 -0.06 -2.43 16 26 H 0.10 2.12 7.78 -2.39 -0.02 2.10 16 27 C -0.09 -1.02 6.63 31.67 0.21 -0.81 16 28 C -0.12 -1.28 6.91 31.89 0.22 -1.06 16 29 C -0.09 -1.22 6.62 31.67 0.21 -1.01 16 30 C -0.14 -2.48 6.64 -10.06 -0.07 -2.55 16 31 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.06 1.22 7.75 -2.39 -0.02 1.21 16 38 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.09 1.36 8.14 -2.39 -0.02 1.35 16 41 H 0.34 10.96 8.43 -89.70 -0.76 10.20 16 42 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 43 H 0.12 2.86 8.14 -2.38 -0.02 2.84 16 44 H 0.39 15.07 5.76 -92.71 -0.53 14.54 16 45 H 0.28 15.40 8.31 -92.71 -0.77 14.63 16 46 H 0.41 4.17 8.60 -92.71 -0.80 3.37 16 47 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 48 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 49 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 50 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 51 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 52 H 0.08 0.89 8.14 -2.38 -0.02 0.87 16 Total: -1.00 -83.40 422.10 -0.61 -84.02 By element: Atomic # 1 Polarization: 45.68 SS G_CDS: -1.22 Total: 44.46 kcal Atomic # 6 Polarization: 0.26 SS G_CDS: 5.24 Total: 5.50 kcal Atomic # 7 Polarization: -115.35 SS G_CDS: -6.44 Total: -121.79 kcal Atomic # 8 Polarization: -52.47 SS G_CDS: -0.10 Total: -52.57 kcal Atomic # 14 Polarization: 38.48 SS G_CDS: 1.90 Total: 40.38 kcal Total: -83.40 -0.61 -84.02 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330778008.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.248 kcal (2) G-P(sol) polarization free energy of solvation -83.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds