Wall clock time and date at job start Tue Mar 31 2020 19:55:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.46762 * 2 1 4 4 C 1.52995 * 109.47680 * 239.99372 * 2 1 3 5 5 C 1.52997 * 109.47179 * 174.99859 * 4 2 1 6 6 C 1.52998 * 109.47032 * 180.02562 * 5 4 2 7 7 N 1.46903 * 109.47120 * 180.02562 * 6 5 4 8 8 C 1.46900 * 110.99956 * 180.02562 * 7 6 5 9 9 C 1.50701 * 109.47076 * 179.97438 * 8 7 6 10 10 O 1.21288 * 119.99882 * 0.02562 * 9 8 7 11 11 N 1.34780 * 119.99729 * 179.97438 * 9 8 7 12 12 C 1.37098 * 119.99583 * 180.02562 * 11 9 8 13 13 H 1.08002 * 120.00370 * 359.97438 * 12 11 9 14 14 C 1.38949 * 120.00005 * 180.02562 * 12 11 9 15 15 N 1.31417 * 119.99816 * 0.02562 * 14 12 11 16 16 Si 1.86805 * 120.00356 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47122 * 89.99644 * 16 14 12 18 18 H 1.48502 * 109.47014 * 210.00229 * 16 14 12 19 19 H 1.48504 * 109.46567 * 329.99742 * 16 14 12 20 20 N 1.46506 * 109.46710 * 119.99420 * 2 1 3 21 21 C 1.34773 * 119.99968 * 275.00042 * 20 2 1 22 22 O 1.21283 * 120.00360 * 359.73034 * 21 20 2 23 23 C 1.50706 * 120.00081 * 180.02562 * 21 20 2 24 24 C 1.52996 * 119.29797 * 250.25025 * 23 21 20 25 25 C 1.52995 * 60.37823 * 248.69099 * 24 23 21 26 26 H 1.08997 * 119.75979 * 111.12104 * 25 24 23 27 27 C 1.54267 * 118.19754 * 266.38398 * 25 24 23 28 28 C 1.54890 * 104.19647 * 87.79022 * 27 25 24 29 29 C 1.54269 * 117.40818 * 45.90042 * 23 21 20 30 30 H 1.09001 * 109.47185 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47804 * 300.00082 * 1 2 3 32 32 H 1.09002 * 109.46963 * 60.00572 * 1 2 3 33 33 H 1.09001 * 109.47417 * 295.00510 * 4 2 1 34 34 H 1.09007 * 109.46847 * 54.99961 * 4 2 1 35 35 H 1.09005 * 109.47256 * 300.00163 * 5 4 2 36 36 H 1.08997 * 109.47189 * 60.00256 * 5 4 2 37 37 H 1.09001 * 109.47211 * 300.00435 * 6 5 4 38 38 H 1.08997 * 109.47204 * 59.99923 * 6 5 4 39 39 H 1.00899 * 110.99956 * 56.04683 * 7 6 5 40 40 H 1.09004 * 109.47350 * 299.99868 * 8 7 6 41 41 H 1.09003 * 109.47535 * 59.99772 * 8 7 6 42 42 H 0.96998 * 120.00537 * 0.02562 * 11 9 8 43 43 H 0.97000 * 119.99994 * 180.02562 * 15 14 12 44 44 H 0.96998 * 119.99507 * 95.00898 * 20 2 1 45 45 H 1.09002 * 117.46246 * 356.28917 * 24 23 21 46 46 H 1.09001 * 117.46188 * 141.09425 * 24 23 21 47 47 H 1.09003 * 110.48716 * 206.46260 * 27 25 24 48 48 H 1.08995 * 110.48992 * 328.97606 * 27 25 24 49 49 H 1.09001 * 110.75834 * 80.36819 * 28 27 25 50 50 H 1.08997 * 110.75986 * 203.55847 * 28 27 25 51 51 H 1.09001 * 110.48534 * 235.04609 * 29 23 21 52 52 H 1.08992 * 110.48707 * 357.69207 * 29 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 3.5649 -0.6133 -1.3134 6 6 4.0750 -1.3341 -2.5629 7 7 5.5391 -1.2309 -2.6244 8 6 6.0654 -1.9128 -3.8143 9 6 7.5667 -1.7853 -3.8435 10 8 8.1417 -1.1859 -2.9597 11 7 8.2705 -2.3383 -4.8512 12 6 9.6363 -2.2228 -4.8774 13 1 10.1483 -1.6883 -4.0908 14 6 10.3619 -2.7925 -5.9165 15 7 9.7388 -3.4415 -6.8744 16 14 12.2230 -2.6357 -5.9519 17 1 12.8302 -3.7827 -5.2300 18 1 12.6928 -2.6326 -7.3607 19 1 12.6255 -1.3671 -5.2931 20 7 2.0183 -0.6905 1.1963 21 6 2.1469 -0.0181 2.3572 22 8 1.8632 1.1599 2.4104 23 6 2.6497 -0.7282 3.5877 24 6 1.6830 -1.0023 4.7415 25 6 2.8142 0.0110 4.9271 26 1 2.5805 1.0714 5.0216 27 6 4.1404 -0.4815 5.5423 28 6 4.9607 -0.9806 4.3269 29 6 3.8888 -1.6334 3.4287 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 1.7518 -1.7716 -1.2054 34 1 1.6055 -0.2619 -2.1369 35 1 3.8533 0.4370 -1.3572 36 1 3.9995 -1.0727 -0.4257 37 1 3.7866 -2.3844 -2.5196 38 1 3.6404 -0.8743 -3.4505 39 1 5.9627 -1.5925 -1.7830 40 1 5.7905 -2.9670 -3.7804 41 1 5.6449 -1.4564 -4.7105 42 1 7.8107 -2.8181 -5.5578 43 1 10.2454 -3.8395 -7.5996 44 1 2.2490 -1.6317 1.1528 45 1 0.6690 -0.6128 4.6510 46 1 1.7746 -1.9579 5.2577 47 1 4.6575 0.3385 6.0406 48 1 3.9568 -1.2968 6.2420 49 1 5.4298 -0.1447 3.8079 50 1 5.7093 -1.7088 4.6389 51 1 3.6740 -2.6404 3.7864 52 1 4.2122 -1.6581 2.3882 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330876043.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:55:18 Heat of formation + Delta-G solvation = -70.296198 kcal Electronic energy + Delta-G solvation = -28649.600908 eV Core-core repulsion = 24648.620518 eV Total energy + Delta-G solvation = -4000.980390 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.89539 -38.85054 -38.29310 -36.93739 -35.47162 -33.88561 -32.57043 -32.04568 -31.23733 -30.67659 -28.62101 -27.32389 -25.18774 -24.16597 -23.38086 -22.54029 -21.49813 -21.09315 -20.61742 -19.54250 -19.19805 -17.87601 -17.48286 -16.73881 -16.11021 -15.73423 -15.51674 -15.32365 -14.84969 -14.63419 -14.44290 -14.26859 -13.88407 -13.87006 -13.66000 -13.55793 -13.42275 -13.25356 -13.06264 -12.62408 -12.44809 -12.16150 -11.93331 -11.80548 -11.56435 -11.52916 -11.45931 -11.41941 -11.35167 -11.26653 -11.04808 -10.88615 -10.77682 -10.74807 -10.39210 -10.21506 -10.08143 -9.88280 -9.50822 -9.31774 -8.45491 -8.04380 -7.95423 -6.41555 -3.82334 2.28994 2.85830 3.17889 3.24594 3.26459 3.32781 3.91275 4.02260 4.05468 4.22639 4.24346 4.34944 4.51135 4.62473 4.77747 4.81441 4.84379 4.98520 5.05236 5.07841 5.14886 5.17593 5.24997 5.25374 5.27664 5.31191 5.32310 5.43411 5.48443 5.51589 5.53493 5.57151 5.68331 5.70249 5.73843 5.77490 5.81038 5.82427 5.92010 5.99208 6.01141 6.08229 6.19020 6.28264 6.30871 7.23936 7.27359 7.55418 7.67927 8.01853 8.06737 8.61692 9.18157 9.54660 10.06265 10.76210 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013811 B = 0.001881 C = 0.001695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2026.892153 B =14884.520647 C =16514.882629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.141 3.859 3 H 0.090 0.910 4 C -0.125 4.125 5 C -0.117 4.117 6 C 0.059 3.941 7 N -0.670 5.670 8 C 0.051 3.949 9 C 0.441 3.559 10 O -0.583 6.583 11 N -0.564 5.564 12 C -0.299 4.299 13 H 0.103 0.897 14 C 0.021 3.979 15 N -0.902 5.902 16 Si 0.930 3.070 17 H -0.278 1.278 18 H -0.284 1.284 19 H -0.269 1.269 20 N -0.718 5.718 21 C 0.559 3.441 22 O -0.541 6.541 23 C -0.182 4.182 24 C -0.122 4.122 25 C -0.127 4.127 26 H 0.119 0.881 27 C -0.097 4.097 28 C -0.124 4.124 29 C -0.086 4.086 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.061 0.939 37 H 0.024 0.976 38 H 0.070 0.930 39 H 0.348 0.652 40 H 0.042 0.958 41 H 0.085 0.915 42 H 0.392 0.608 43 H 0.271 0.729 44 H 0.400 0.600 45 H 0.101 0.899 46 H 0.102 0.898 47 H 0.073 0.927 48 H 0.071 0.929 49 H 0.071 0.929 50 H 0.074 0.926 51 H 0.074 0.926 52 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.450 0.119 19.026 27.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.037 3.963 3 H 0.108 0.892 4 C -0.163 4.163 5 C -0.155 4.155 6 C -0.070 4.070 7 N -0.303 5.303 8 C -0.082 4.082 9 C 0.226 3.774 10 O -0.467 6.467 11 N -0.201 5.201 12 C -0.428 4.428 13 H 0.121 0.879 14 C -0.180 4.180 15 N -0.544 5.544 16 Si 0.757 3.243 17 H -0.204 1.204 18 H -0.209 1.209 19 H -0.194 1.194 20 N -0.370 5.370 21 C 0.345 3.655 22 O -0.418 6.418 23 C -0.185 4.185 24 C -0.159 4.159 25 C -0.146 4.146 26 H 0.137 0.863 27 C -0.135 4.135 28 C -0.162 4.162 29 C -0.123 4.123 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.100 0.900 35 H 0.092 0.908 36 H 0.079 0.921 37 H 0.042 0.958 38 H 0.088 0.912 39 H 0.167 0.833 40 H 0.060 0.940 41 H 0.103 0.897 42 H 0.225 0.775 43 H 0.081 0.919 44 H 0.235 0.765 45 H 0.119 0.881 46 H 0.120 0.880 47 H 0.092 0.908 48 H 0.089 0.911 49 H 0.090 0.910 50 H 0.093 0.907 51 H 0.092 0.908 52 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -20.170 1.915 19.147 27.876 hybrid contribution 0.572 -1.691 -0.544 1.867 sum -19.598 0.224 18.602 27.022 Atomic orbital electron populations 1.22170 0.95318 1.02044 1.02542 1.21018 0.93786 0.97820 0.83719 0.89228 1.21873 0.96344 1.00941 0.97182 1.21553 0.93931 1.02289 0.97681 1.21974 0.88784 0.97781 0.98470 1.60047 1.03683 1.61120 1.05408 1.21668 0.95204 0.96618 0.94692 1.19833 0.88059 0.84706 0.84806 1.90521 1.71147 1.45955 1.39094 1.41870 1.07407 1.48458 1.22379 1.19706 0.81518 1.32767 1.08850 0.87931 1.25270 1.00718 0.96635 0.95399 1.69616 1.36671 1.35977 1.12104 0.85851 0.82176 0.78912 0.77318 1.20430 1.20921 1.19391 1.46016 1.67432 1.14027 1.09476 1.19319 0.76531 0.86298 0.83326 1.90696 1.50430 1.15732 1.84924 1.22407 1.01672 1.04916 0.89479 1.23087 0.95053 1.00586 0.97203 1.23371 0.96541 0.98788 0.95861 0.86304 1.22010 0.93301 1.00776 0.97385 1.22591 0.97460 1.00620 0.95505 1.21823 0.91834 0.97664 1.00991 0.92505 0.92271 0.91488 0.91415 0.90043 0.90764 0.92061 0.95771 0.91169 0.83307 0.93987 0.89656 0.77464 0.91891 0.76535 0.88054 0.88003 0.90791 0.91065 0.90977 0.90688 0.90768 0.90606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.24 9.48 37.16 0.35 -0.89 16 2 C 0.14 1.20 2.58 -67.93 -0.18 1.03 16 3 H 0.09 0.97 7.57 -51.93 -0.39 0.58 16 4 C -0.12 -0.94 4.75 -26.73 -0.13 -1.06 16 5 C -0.12 -1.17 5.36 -26.73 -0.14 -1.31 16 6 C 0.06 0.70 5.69 -3.82 -0.02 0.68 16 7 N -0.67 -10.91 6.12 -115.05 -0.70 -11.62 16 8 C 0.05 0.91 6.17 -4.98 -0.03 0.88 16 9 C 0.44 10.54 7.82 -10.98 -0.09 10.46 16 10 O -0.58 -16.07 15.78 5.55 0.09 -15.99 16 11 N -0.56 -14.44 5.29 -10.96 -0.06 -14.50 16 12 C -0.30 -8.40 9.68 -14.93 -0.14 -8.55 16 13 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 14 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 15 N -0.90 -24.63 13.05 55.50 0.72 -23.90 16 16 Si 0.93 21.14 29.55 -169.99 -5.02 16.12 16 17 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 18 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 19 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 20 N -0.72 -6.01 4.36 -53.80 -0.23 -6.24 16 21 C 0.56 5.98 7.37 -10.98 -0.08 5.90 16 22 O -0.54 -7.87 16.45 5.56 0.09 -7.78 16 23 C -0.18 -1.52 2.68 -154.54 -0.41 -1.93 16 24 C -0.12 -0.83 9.87 -26.74 -0.26 -1.10 16 25 C -0.13 -1.03 6.54 -89.51 -0.59 -1.62 16 26 H 0.12 1.12 8.14 -51.93 -0.42 0.69 16 27 C -0.10 -0.66 6.63 -25.07 -0.17 -0.82 16 28 C -0.12 -0.91 6.88 -25.03 -0.17 -1.09 16 29 C -0.09 -0.61 6.18 -25.37 -0.16 -0.77 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.08 0.57 8.14 -51.92 -0.42 0.15 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.06 0.61 7.75 -51.93 -0.40 0.21 16 37 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.35 5.81 8.43 -39.29 -0.33 5.48 16 40 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 42 H 0.39 9.56 7.90 -40.82 -0.32 9.23 16 43 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 44 H 0.40 2.56 8.16 -40.82 -0.33 2.23 16 45 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 46 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 48 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 49 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 50 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 51 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 52 H 0.08 0.56 7.65 -51.93 -0.40 0.17 16 LS Contribution 424.60 15.07 6.40 6.40 Total: -1.00 -33.60 424.60 -10.33 -43.93 By element: Atomic # 1 Polarization: 22.60 SS G_CDS: -9.30 Total: 13.30 kcal Atomic # 6 Polarization: 2.59 SS G_CDS: -2.31 Total: 0.28 kcal Atomic # 7 Polarization: -55.99 SS G_CDS: -0.27 Total: -56.26 kcal Atomic # 8 Polarization: -23.95 SS G_CDS: 0.18 Total: -23.77 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 6.40 Total: 6.40 kcal Total: -33.60 -10.33 -43.93 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330876043.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.362 kcal (2) G-P(sol) polarization free energy of solvation -33.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds