Wall clock time and date at job start Tue Mar 31 2020 19:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.46762 * 2 1 4 4 C 1.52995 * 109.47680 * 239.99372 * 2 1 3 5 5 C 1.52997 * 109.47179 * 174.99859 * 4 2 1 6 6 C 1.52998 * 109.47032 * 180.02562 * 5 4 2 7 7 N 1.46903 * 109.47120 * 180.02562 * 6 5 4 8 8 C 1.46900 * 110.99956 * 180.02562 * 7 6 5 9 9 C 1.50701 * 109.47076 * 179.97438 * 8 7 6 10 10 O 1.21288 * 119.99882 * 0.02562 * 9 8 7 11 11 N 1.34780 * 119.99729 * 179.97438 * 9 8 7 12 12 C 1.37098 * 119.99583 * 180.02562 * 11 9 8 13 13 H 1.08002 * 120.00370 * 359.97438 * 12 11 9 14 14 C 1.38949 * 120.00005 * 180.02562 * 12 11 9 15 15 N 1.31417 * 119.99816 * 0.02562 * 14 12 11 16 16 Si 1.86805 * 120.00356 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47122 * 89.99644 * 16 14 12 18 18 H 1.48502 * 109.47014 * 210.00229 * 16 14 12 19 19 H 1.48504 * 109.46567 * 329.99742 * 16 14 12 20 20 N 1.46506 * 109.46710 * 119.99420 * 2 1 3 21 21 C 1.34773 * 119.99968 * 275.00042 * 20 2 1 22 22 O 1.21283 * 120.00360 * 359.73034 * 21 20 2 23 23 C 1.50706 * 120.00081 * 180.02562 * 21 20 2 24 24 C 1.52996 * 119.29797 * 250.25025 * 23 21 20 25 25 C 1.52995 * 60.37823 * 248.69099 * 24 23 21 26 26 H 1.08997 * 119.75979 * 111.12104 * 25 24 23 27 27 C 1.54267 * 118.19754 * 266.38398 * 25 24 23 28 28 C 1.54890 * 104.19647 * 87.79022 * 27 25 24 29 29 C 1.54269 * 117.40818 * 45.90042 * 23 21 20 30 30 H 1.09001 * 109.47185 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47804 * 300.00082 * 1 2 3 32 32 H 1.09002 * 109.46963 * 60.00572 * 1 2 3 33 33 H 1.09001 * 109.47417 * 295.00510 * 4 2 1 34 34 H 1.09007 * 109.46847 * 54.99961 * 4 2 1 35 35 H 1.09005 * 109.47256 * 300.00163 * 5 4 2 36 36 H 1.08997 * 109.47189 * 60.00256 * 5 4 2 37 37 H 1.09001 * 109.47211 * 300.00435 * 6 5 4 38 38 H 1.08997 * 109.47204 * 59.99923 * 6 5 4 39 39 H 1.00899 * 110.99956 * 56.04683 * 7 6 5 40 40 H 1.09004 * 109.47350 * 299.99868 * 8 7 6 41 41 H 1.09003 * 109.47535 * 59.99772 * 8 7 6 42 42 H 0.96998 * 120.00537 * 0.02562 * 11 9 8 43 43 H 0.97000 * 119.99994 * 180.02562 * 15 14 12 44 44 H 0.96998 * 119.99507 * 95.00898 * 20 2 1 45 45 H 1.09002 * 117.46246 * 356.28917 * 24 23 21 46 46 H 1.09001 * 117.46188 * 141.09425 * 24 23 21 47 47 H 1.09003 * 110.48716 * 206.46260 * 27 25 24 48 48 H 1.08995 * 110.48992 * 328.97606 * 27 25 24 49 49 H 1.09001 * 110.75834 * 80.36819 * 28 27 25 50 50 H 1.08997 * 110.75986 * 203.55847 * 28 27 25 51 51 H 1.09001 * 110.48534 * 235.04609 * 29 23 21 52 52 H 1.08992 * 110.48707 * 357.69207 * 29 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 3.5649 -0.6133 -1.3134 6 6 4.0750 -1.3341 -2.5629 7 7 5.5391 -1.2309 -2.6244 8 6 6.0654 -1.9128 -3.8143 9 6 7.5667 -1.7853 -3.8435 10 8 8.1417 -1.1859 -2.9597 11 7 8.2705 -2.3383 -4.8512 12 6 9.6363 -2.2228 -4.8774 13 1 10.1483 -1.6883 -4.0908 14 6 10.3619 -2.7925 -5.9165 15 7 9.7388 -3.4415 -6.8744 16 14 12.2230 -2.6357 -5.9519 17 1 12.8302 -3.7827 -5.2300 18 1 12.6928 -2.6326 -7.3607 19 1 12.6255 -1.3671 -5.2931 20 7 2.0183 -0.6905 1.1963 21 6 2.1469 -0.0181 2.3572 22 8 1.8632 1.1599 2.4104 23 6 2.6497 -0.7282 3.5877 24 6 1.6830 -1.0023 4.7415 25 6 2.8142 0.0110 4.9271 26 1 2.5805 1.0714 5.0216 27 6 4.1404 -0.4815 5.5423 28 6 4.9607 -0.9806 4.3269 29 6 3.8888 -1.6334 3.4287 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 1.7518 -1.7716 -1.2054 34 1 1.6055 -0.2619 -2.1369 35 1 3.8533 0.4370 -1.3572 36 1 3.9995 -1.0727 -0.4257 37 1 3.7866 -2.3844 -2.5196 38 1 3.6404 -0.8743 -3.4505 39 1 5.9627 -1.5925 -1.7830 40 1 5.7905 -2.9670 -3.7804 41 1 5.6449 -1.4564 -4.7105 42 1 7.8107 -2.8181 -5.5578 43 1 10.2454 -3.8395 -7.5996 44 1 2.2490 -1.6317 1.1528 45 1 0.6690 -0.6128 4.6510 46 1 1.7746 -1.9579 5.2577 47 1 4.6575 0.3385 6.0406 48 1 3.9568 -1.2968 6.2420 49 1 5.4298 -0.1447 3.8079 50 1 5.7093 -1.7088 4.6389 51 1 3.6740 -2.6404 3.7864 52 1 4.2122 -1.6581 2.3882 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330876043.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:55:17 Heat of formation + Delta-G solvation = -93.486883 kcal Electronic energy + Delta-G solvation = -28650.606531 eV Core-core repulsion = 24648.620518 eV Total energy + Delta-G solvation = -4001.986014 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.61067 -40.17264 -39.52477 -37.90237 -36.64073 -35.85574 -33.55572 -33.21787 -32.62845 -31.56348 -29.21093 -28.65517 -26.68830 -25.18524 -24.45679 -23.20589 -22.40507 -21.79851 -21.24714 -21.04804 -20.24145 -19.90503 -18.16781 -17.84539 -17.48025 -17.02187 -16.52286 -16.22937 -16.11786 -15.97932 -15.59493 -15.45173 -15.19611 -15.02209 -14.58487 -14.34687 -14.17079 -14.10246 -13.96339 -13.92874 -13.50954 -13.27997 -13.10331 -12.98550 -12.81640 -12.75636 -12.43295 -12.41477 -12.16780 -12.11212 -12.09509 -12.01427 -11.88233 -11.70341 -11.59468 -11.51302 -11.37904 -10.68821 -10.67431 -10.36348 -10.09116 -10.02534 -9.30011 -8.47473 -5.96329 1.37551 1.41445 1.49915 1.54337 2.04130 2.16268 2.28786 2.60426 2.92191 3.19618 3.45311 3.49705 3.60576 3.69972 3.81603 3.92988 4.04598 4.08484 4.23954 4.30514 4.35012 4.40246 4.42613 4.46785 4.50242 4.56839 4.62959 4.65056 4.69258 4.72196 4.78356 4.81412 4.85896 4.90330 4.95055 4.97356 5.09154 5.13955 5.17800 5.23908 5.25625 5.28261 5.39295 5.40675 5.43404 5.57654 5.90360 6.12955 6.42531 6.55622 6.59436 7.11747 7.25186 7.55229 8.10754 8.69841 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013811 B = 0.001881 C = 0.001695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2026.892153 B =14884.520647 C =16514.882629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.140 3.860 3 H 0.059 0.941 4 C -0.112 4.112 5 C -0.110 4.110 6 C 0.062 3.938 7 N -0.690 5.690 8 C 0.066 3.934 9 C 0.435 3.565 10 O -0.625 6.625 11 N -0.573 5.573 12 C -0.335 4.335 13 H 0.078 0.922 14 C -0.013 4.013 15 N -0.919 5.919 16 Si 0.993 3.007 17 H -0.269 1.269 18 H -0.270 1.270 19 H -0.274 1.274 20 N -0.706 5.706 21 C 0.551 3.449 22 O -0.590 6.590 23 C -0.191 4.191 24 C -0.102 4.102 25 C -0.142 4.142 26 H 0.096 0.904 27 C -0.091 4.091 28 C -0.128 4.128 29 C -0.081 4.081 30 H 0.073 0.927 31 H 0.037 0.963 32 H 0.078 0.922 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.049 0.951 36 H 0.060 0.940 37 H 0.046 0.954 38 H 0.077 0.923 39 H 0.343 0.657 40 H 0.069 0.931 41 H 0.103 0.897 42 H 0.397 0.603 43 H 0.278 0.722 44 H 0.413 0.587 45 H 0.097 0.903 46 H 0.129 0.871 47 H 0.072 0.928 48 H 0.091 0.909 49 H 0.049 0.951 50 H 0.088 0.912 51 H 0.097 0.903 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.403 -2.170 18.887 28.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.036 3.964 3 H 0.078 0.922 4 C -0.150 4.150 5 C -0.148 4.148 6 C -0.066 4.066 7 N -0.323 5.323 8 C -0.066 4.066 9 C 0.223 3.777 10 O -0.512 6.512 11 N -0.210 5.210 12 C -0.464 4.464 13 H 0.096 0.904 14 C -0.213 4.213 15 N -0.560 5.560 16 Si 0.817 3.183 17 H -0.195 1.195 18 H -0.195 1.195 19 H -0.199 1.199 20 N -0.357 5.357 21 C 0.339 3.661 22 O -0.471 6.471 23 C -0.194 4.194 24 C -0.139 4.139 25 C -0.161 4.161 26 H 0.114 0.886 27 C -0.128 4.128 28 C -0.166 4.166 29 C -0.118 4.118 30 H 0.092 0.908 31 H 0.056 0.944 32 H 0.097 0.903 33 H 0.110 0.890 34 H 0.111 0.889 35 H 0.067 0.933 36 H 0.078 0.922 37 H 0.064 0.936 38 H 0.095 0.905 39 H 0.161 0.839 40 H 0.087 0.913 41 H 0.121 0.879 42 H 0.231 0.769 43 H 0.087 0.913 44 H 0.249 0.751 45 H 0.115 0.885 46 H 0.147 0.853 47 H 0.090 0.910 48 H 0.110 0.890 49 H 0.068 0.932 50 H 0.107 0.893 51 H 0.116 0.884 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -21.156 -0.421 18.976 28.422 hybrid contribution 0.826 -0.927 -0.499 1.338 sum -20.329 -1.348 18.477 27.504 Atomic orbital electron populations 1.22102 0.94215 1.02974 1.02071 1.20999 0.94585 0.96558 0.84293 0.92244 1.21782 0.94134 1.02265 0.96802 1.21474 0.95793 1.00492 0.97052 1.22060 0.85872 0.99334 0.99355 1.60056 1.06340 1.61353 1.04544 1.21528 0.90296 0.98641 0.96182 1.20952 0.90670 0.82787 0.83280 1.90489 1.72858 1.47402 1.40441 1.41938 1.06875 1.49064 1.23136 1.19658 0.83065 1.34381 1.09317 0.90443 1.26052 1.04970 0.95718 0.94582 1.69671 1.38275 1.35794 1.12277 0.84926 0.76806 0.78720 0.77869 1.19455 1.19488 1.19936 1.45962 1.66381 1.14495 1.08868 1.19813 0.75910 0.85878 0.84509 1.90669 1.52756 1.17868 1.85763 1.22459 1.02895 1.05381 0.88631 1.23173 0.94201 1.01034 0.95484 1.23416 0.98161 0.98219 0.96299 0.88559 1.21998 0.92177 1.01342 0.97306 1.22617 0.97926 1.00255 0.95755 1.21834 0.90843 0.98407 1.00721 0.90764 0.94409 0.90343 0.89048 0.88906 0.93253 0.92172 0.93550 0.90484 0.83912 0.91331 0.87938 0.76902 0.91258 0.75060 0.88474 0.85336 0.90959 0.89045 0.93232 0.89328 0.88446 0.91202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.20 9.48 71.98 0.68 -1.51 16 2 C 0.14 2.31 2.58 44.99 0.12 2.43 16 3 H 0.06 1.36 7.57 -2.39 -0.02 1.35 16 4 C -0.11 -1.42 4.75 30.59 0.15 -1.28 16 5 C -0.11 -2.07 5.36 30.59 0.16 -1.91 16 6 C 0.06 1.32 5.69 86.30 0.49 1.81 16 7 N -0.69 -21.67 6.12 -517.92 -3.17 -24.84 16 8 C 0.07 2.24 6.17 85.56 0.53 2.77 16 9 C 0.44 20.95 7.82 87.66 0.69 21.63 16 10 O -0.63 -35.30 15.78 -3.05 -0.05 -35.34 16 11 N -0.57 -29.58 5.29 -306.98 -1.62 -31.21 16 12 C -0.33 -19.16 9.68 84.04 0.81 -18.35 16 13 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 14 C -0.01 -0.72 5.50 84.93 0.47 -0.25 16 15 N -0.92 -49.53 13.05 21.66 0.28 -49.25 16 16 Si 0.99 43.03 29.55 68.60 2.03 45.06 16 17 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 18 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 19 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 20 N -0.71 -11.42 4.36 -442.53 -1.93 -13.35 16 21 C 0.55 12.12 7.37 87.66 0.65 12.77 16 22 O -0.59 -18.35 16.45 -3.04 -0.05 -18.40 16 23 C -0.19 -3.10 2.68 -52.20 -0.14 -3.24 16 24 C -0.10 -1.25 9.87 30.59 0.30 -0.95 16 25 C -0.14 -2.32 6.54 -10.07 -0.07 -2.39 16 26 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 27 C -0.09 -1.14 6.63 31.67 0.21 -0.93 16 28 C -0.13 -1.80 6.88 31.69 0.22 -1.58 16 29 C -0.08 -1.04 6.18 31.48 0.19 -0.85 16 30 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.09 0.80 8.14 -2.39 -0.02 0.79 16 34 H 0.09 1.04 8.14 -2.38 -0.02 1.02 16 35 H 0.05 1.18 8.14 -2.38 -0.02 1.16 16 36 H 0.06 1.14 7.75 -2.39 -0.02 1.12 16 37 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.34 11.28 8.43 -89.69 -0.76 10.52 16 40 H 0.07 2.00 8.14 -2.38 -0.02 1.98 16 41 H 0.10 3.16 8.14 -2.39 -0.02 3.14 16 42 H 0.40 19.33 7.90 -92.71 -0.73 18.59 16 43 H 0.28 13.98 8.31 -92.71 -0.77 13.21 16 44 H 0.41 4.56 8.16 -92.71 -0.76 3.81 16 45 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 46 H 0.13 0.90 8.14 -2.39 -0.02 0.88 16 47 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 48 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 49 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 50 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 51 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 52 H 0.07 0.97 7.65 -2.39 -0.02 0.96 16 Total: -1.00 -75.48 424.60 -0.38 -75.85 By element: Atomic # 1 Polarization: 44.62 SS G_CDS: -1.32 Total: 43.30 kcal Atomic # 6 Polarization: 2.71 SS G_CDS: 5.46 Total: 8.17 kcal Atomic # 7 Polarization: -112.20 SS G_CDS: -6.44 Total: -118.64 kcal Atomic # 8 Polarization: -53.64 SS G_CDS: -0.10 Total: -53.74 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Total: -75.48 -0.38 -75.85 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330876043.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.635 kcal (2) G-P(sol) polarization free energy of solvation -75.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds