Wall clock time and date at job start Tue Mar 31 2020 20:07:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09006 * 109.46694 * 2 1 4 4 C 1.52996 * 109.47174 * 239.99925 * 2 1 3 5 5 C 1.52998 * 109.47212 * 174.99868 * 4 2 1 6 6 N 1.46501 * 109.47519 * 179.97438 * 5 4 2 7 7 C 1.34769 * 120.00133 * 179.97438 * 6 5 4 8 8 O 1.21282 * 120.00525 * 0.02562 * 7 6 5 9 9 C 1.50700 * 120.00070 * 180.02562 * 7 6 5 10 10 C 1.51854 * 108.64912 * 304.09167 * 9 7 6 11 11 C 1.52992 * 110.75532 * 172.40437 * 10 9 7 12 12 C 1.51374 * 108.62552 * 85.73108 * 11 10 9 13 13 C 1.29524 * 120.35881 * 288.08537 * 12 11 10 14 14 C 1.51367 * 120.36154 * 0.02562 * 13 12 11 15 15 C 1.51848 * 108.65502 * 180.02562 * 9 7 6 16 16 N 1.46901 * 109.47193 * 119.99429 * 2 1 3 17 17 C 1.46901 * 111.00200 * 275.00305 * 16 2 1 18 18 C 1.50699 * 109.46642 * 179.97438 * 17 16 2 19 19 O 1.21286 * 120.00305 * 0.02562 * 18 17 16 20 20 N 1.34782 * 119.99404 * 179.97438 * 18 17 16 21 21 C 1.37102 * 119.99686 * 180.02562 * 20 18 17 22 22 H 1.08001 * 119.99747 * 0.02562 * 21 20 18 23 23 C 1.38947 * 119.99706 * 180.02562 * 21 20 18 24 24 N 1.31417 * 119.99769 * 179.97438 * 23 21 20 25 25 Si 1.86797 * 120.00171 * 0.02562 * 23 21 20 26 26 H 1.48502 * 109.47170 * 89.99858 * 25 23 21 27 27 H 1.48506 * 109.47026 * 209.99978 * 25 23 21 28 28 H 1.48501 * 109.47109 * 330.00137 * 25 23 21 29 29 H 1.08998 * 109.47349 * 300.00144 * 1 2 3 30 30 H 1.08994 * 109.47143 * 60.00389 * 1 2 3 31 31 H 1.09001 * 109.47131 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47644 * 55.00066 * 4 2 1 33 33 H 1.08997 * 109.47508 * 294.99717 * 4 2 1 34 34 H 1.09009 * 109.47297 * 59.99707 * 5 4 2 35 35 H 1.09005 * 109.47082 * 300.00322 * 5 4 2 36 36 H 0.97006 * 119.99547 * 0.02562 * 6 5 4 37 37 H 1.09001 * 108.60680 * 61.97728 * 9 7 6 38 38 H 1.09002 * 109.22200 * 292.72444 * 10 9 7 39 39 H 1.08999 * 109.22417 * 52.07098 * 10 9 7 40 40 H 1.08996 * 109.62637 * 325.97959 * 11 10 9 41 41 H 1.09005 * 109.59333 * 205.46518 * 11 10 9 42 42 H 1.08003 * 119.81809 * 108.35829 * 12 11 10 43 43 H 1.07998 * 119.81554 * 179.97438 * 13 12 11 44 44 H 1.08997 * 109.61294 * 191.61876 * 14 13 12 45 45 H 1.09008 * 109.60830 * 311.96047 * 14 13 12 46 46 H 1.09008 * 109.22036 * 67.27129 * 15 9 7 47 47 H 1.09005 * 109.21967 * 307.93202 * 15 9 7 48 48 H 1.00907 * 110.99535 * 38.96159 * 16 2 1 49 49 H 1.08998 * 109.47064 * 299.99711 * 17 16 2 50 50 H 1.09001 * 109.46781 * 60.00159 * 17 16 2 51 51 H 0.96994 * 120.00312 * 0.02562 * 20 18 17 52 52 H 0.97001 * 119.99942 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5648 -0.6133 -1.3137 6 7 4.0533 -1.3044 -2.5095 7 6 5.3741 -1.3398 -2.7751 8 8 6.1585 -0.7999 -2.0240 9 6 5.8765 -2.0502 -4.0055 10 6 5.3793 -3.4847 -3.9750 11 6 5.7016 -4.1984 -5.2893 12 6 7.1052 -4.7587 -5.2036 13 6 8.1297 -3.9671 -5.2429 14 6 7.9363 -2.4715 -5.3743 15 6 7.3897 -1.9318 -4.0509 16 7 2.0197 -0.6924 1.1995 17 6 2.0825 0.2228 2.3469 18 6 2.5874 -0.5217 3.5560 19 8 2.8678 -1.6985 3.4702 20 7 2.7282 0.1207 4.7325 21 6 3.1881 -0.5563 5.8324 22 1 3.4378 -1.6043 5.7560 23 6 3.3328 0.1058 7.0454 24 7 3.7731 -0.5433 8.0998 25 14 2.9002 1.9181 7.1776 26 1 1.4708 2.0597 7.5545 27 1 3.7510 2.5557 8.2145 28 1 3.1350 2.5799 5.8691 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6055 -0.2618 -2.1370 33 1 1.7518 -1.7715 -1.2056 34 1 3.9995 -1.0727 -0.4259 35 1 3.8532 0.4371 -1.3573 36 1 3.4259 -1.7359 -3.1105 37 1 5.4614 -1.5582 -4.8851 38 1 5.8603 -4.0138 -3.1522 39 1 4.3003 -3.4874 -3.8204 40 1 5.6404 -3.4897 -6.1152 41 1 4.9923 -5.0108 -5.4476 42 1 7.2534 -5.8247 -5.1137 43 1 9.1272 -4.3762 -5.1806 44 1 8.8922 -1.9972 -5.5963 45 1 7.2293 -2.2633 -6.1775 46 1 7.8191 -2.5007 -3.2262 47 1 7.6708 -0.8837 -3.9476 48 1 1.4496 -1.4979 1.4101 49 1 2.7588 1.0463 2.1182 50 1 1.0870 0.6164 2.5525 51 1 2.5043 1.0620 4.8010 52 1 3.8738 -0.0812 8.9467 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480808489.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:07 Heat of formation + Delta-G solvation = -74.590138 kcal Electronic energy + Delta-G solvation = -28821.091763 eV Core-core repulsion = 24819.925174 eV Total energy + Delta-G solvation = -4001.166589 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.41408 -38.68263 -38.15512 -37.14347 -34.88854 -33.92591 -33.09552 -32.16026 -31.70974 -31.31945 -28.94886 -26.52301 -26.19841 -24.31891 -23.90217 -23.10713 -21.57384 -20.91009 -19.92962 -19.33893 -18.34468 -18.32041 -17.47800 -16.59247 -16.07298 -15.93451 -15.71178 -15.29357 -15.07982 -14.80716 -14.68906 -14.13258 -14.02284 -13.84071 -13.60142 -13.33807 -13.32540 -13.14766 -12.89869 -12.79504 -12.44749 -12.36439 -12.18544 -12.02312 -11.90509 -11.64969 -11.58811 -11.39457 -11.26819 -11.13830 -11.06591 -10.93791 -10.92630 -10.64163 -10.57360 -9.94998 -9.82595 -9.54531 -9.31769 -9.05934 -8.56829 -8.16694 -8.09808 -6.28336 -3.79608 1.99485 2.59742 3.05130 3.08301 3.09459 3.16853 3.77331 4.08950 4.13401 4.25608 4.41279 4.45559 4.65700 4.70450 4.79144 4.82323 4.85395 4.96459 5.05465 5.10857 5.11576 5.20728 5.24471 5.26409 5.30108 5.36445 5.41551 5.49232 5.51694 5.59381 5.62665 5.68427 5.73002 5.76369 5.85082 5.88330 5.91531 5.95459 6.00946 6.08197 6.10600 6.25545 6.36041 6.42146 6.60393 7.11825 7.42422 7.58951 7.61453 8.17515 8.19124 8.62685 8.97913 9.45383 9.85840 10.84866 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014200 B = 0.001978 C = 0.001846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1971.361464 B =14150.334447 C =15166.955833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.085 3.915 3 H 0.079 0.921 4 C -0.115 4.115 5 C 0.121 3.879 6 N -0.732 5.732 7 C 0.509 3.491 8 O -0.535 6.535 9 C -0.101 4.101 10 C -0.108 4.108 11 C -0.089 4.089 12 C -0.162 4.162 13 C -0.155 4.155 14 C -0.092 4.092 15 C -0.097 4.097 16 N -0.662 5.662 17 C 0.048 3.952 18 C 0.450 3.550 19 O -0.564 6.564 20 N -0.591 5.591 21 C -0.304 4.304 22 H 0.119 0.881 23 C 0.040 3.960 24 N -0.882 5.882 25 Si 0.880 3.120 26 H -0.272 1.272 27 H -0.277 1.277 28 H -0.269 1.269 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.088 0.912 35 H 0.060 0.940 36 H 0.396 0.604 37 H 0.091 0.909 38 H 0.072 0.928 39 H 0.069 0.931 40 H 0.073 0.927 41 H 0.070 0.930 42 H 0.107 0.893 43 H 0.107 0.893 44 H 0.069 0.931 45 H 0.071 0.929 46 H 0.072 0.928 47 H 0.075 0.925 48 H 0.351 0.649 49 H 0.087 0.913 50 H 0.044 0.956 51 H 0.370 0.630 52 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.034 -0.395 -30.805 30.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.026 4.026 3 H 0.098 0.902 4 C -0.153 4.153 5 C -0.002 4.002 6 N -0.383 5.383 7 C 0.295 3.705 8 O -0.411 6.411 9 C -0.122 4.122 10 C -0.145 4.145 11 C -0.127 4.127 12 C -0.180 4.180 13 C -0.173 4.173 14 C -0.129 4.129 15 C -0.135 4.135 16 N -0.295 5.295 17 C -0.085 4.085 18 C 0.236 3.764 19 O -0.446 6.446 20 N -0.231 5.231 21 C -0.432 4.432 22 H 0.137 0.863 23 C -0.163 4.163 24 N -0.522 5.522 25 Si 0.706 3.294 26 H -0.197 1.197 27 H -0.202 1.202 28 H -0.195 1.195 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.107 0.893 35 H 0.078 0.922 36 H 0.229 0.771 37 H 0.109 0.891 38 H 0.091 0.909 39 H 0.087 0.913 40 H 0.091 0.909 41 H 0.089 0.911 42 H 0.125 0.875 43 H 0.125 0.875 44 H 0.088 0.912 45 H 0.089 0.911 46 H 0.090 0.910 47 H 0.093 0.907 48 H 0.171 0.829 49 H 0.105 0.895 50 H 0.062 0.938 51 H 0.203 0.797 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.547 -0.712 -30.202 30.215 hybrid contribution -1.569 1.326 0.350 2.084 sum -2.115 0.614 -29.852 29.933 Atomic orbital electron populations 1.22516 0.97137 1.02357 1.02183 1.21510 0.92422 0.98144 0.90563 0.90245 1.21741 0.94694 1.01687 0.97205 1.21383 0.93738 0.97145 0.87924 1.46101 1.07486 1.57338 1.27411 1.20731 0.82248 0.80259 0.87260 1.90738 1.55232 1.45584 1.49509 1.21020 0.97972 0.96642 0.96614 1.21303 1.00917 0.93674 0.98646 1.20796 0.94790 0.99795 0.97273 1.22541 0.94671 0.99316 1.01454 1.22592 0.98638 0.95497 1.00600 1.20841 1.01469 0.93076 0.97525 1.21105 0.92489 1.02400 0.97465 1.60193 1.57727 1.09072 1.02489 1.21736 0.99887 0.95884 0.90991 1.19726 0.84690 0.88267 0.83731 1.90565 1.53749 1.16059 1.84207 1.42213 1.60251 1.11036 1.09603 1.19432 1.40231 0.97931 0.85648 0.86301 1.25044 0.97533 0.98396 0.95280 1.69628 1.45213 1.36568 1.00793 0.86666 0.79187 0.85004 0.78500 1.19713 1.20172 1.19467 0.92404 0.92191 0.92223 0.91548 0.91106 0.89326 0.92151 0.77051 0.89057 0.90878 0.91250 0.90907 0.91098 0.87512 0.87525 0.91187 0.91073 0.90965 0.90665 0.82861 0.89490 0.93764 0.79723 0.91651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.63 9.16 37.16 0.34 -1.29 16 2 C 0.08 0.89 2.59 -67.71 -0.18 0.72 16 3 H 0.08 0.83 7.80 -51.93 -0.40 0.42 16 4 C -0.11 -1.03 5.01 -26.73 -0.13 -1.17 16 5 C 0.12 1.41 5.56 -4.04 -0.02 1.39 16 6 N -0.73 -7.13 5.36 -60.29 -0.32 -7.45 16 7 C 0.51 6.04 7.14 -10.99 -0.08 5.96 16 8 O -0.53 -8.98 15.76 5.56 0.09 -8.90 16 9 C -0.10 -0.83 2.06 -92.94 -0.19 -1.02 16 10 C -0.11 -0.76 4.86 -27.32 -0.13 -0.89 16 11 C -0.09 -0.52 5.61 -27.56 -0.15 -0.68 16 12 C -0.16 -1.12 9.34 -35.28 -0.33 -1.45 16 13 C -0.16 -1.12 9.34 -35.29 -0.33 -1.45 16 14 C -0.09 -0.64 5.61 -27.54 -0.15 -0.79 16 15 C -0.10 -0.88 4.30 -27.30 -0.12 -1.00 16 16 N -0.66 -9.76 5.33 -107.99 -0.58 -10.34 16 17 C 0.05 0.78 5.97 -4.98 -0.03 0.75 16 18 C 0.45 10.33 7.82 -10.98 -0.09 10.24 16 19 O -0.56 -15.33 15.78 5.55 0.09 -15.24 16 20 N -0.59 -14.32 5.09 -10.96 -0.06 -14.38 16 21 C -0.30 -8.74 10.16 -14.93 -0.15 -8.89 16 22 H 0.12 3.91 7.39 -52.49 -0.39 3.52 16 23 C 0.04 1.12 5.50 -17.47 -0.10 1.03 16 24 N -0.88 -26.15 13.96 55.50 0.77 -25.38 16 25 Si 0.88 19.68 27.74 -169.99 -4.71 14.97 16 26 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 27 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 28 H -0.27 -5.51 6.52 56.52 0.37 -5.15 16 29 H 0.06 0.55 7.45 -51.93 -0.39 0.17 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.53 8.13 -51.93 -0.42 0.10 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.09 1.39 7.75 -51.92 -0.40 0.98 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.40 2.56 7.48 -40.82 -0.31 2.25 16 37 H 0.09 0.57 7.89 -51.93 -0.41 0.16 16 38 H 0.07 0.66 7.85 -51.93 -0.41 0.25 16 39 H 0.07 0.39 6.99 -51.93 -0.36 0.03 16 40 H 0.07 0.37 6.69 -51.93 -0.35 0.03 16 41 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.11 0.67 8.06 -52.48 -0.42 0.25 16 43 H 0.11 0.70 8.06 -52.49 -0.42 0.28 16 44 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.07 0.42 6.70 -51.92 -0.35 0.08 16 46 H 0.07 0.79 7.86 -51.92 -0.41 0.39 16 47 H 0.07 0.76 7.77 -51.93 -0.40 0.36 16 48 H 0.35 5.41 8.17 -39.29 -0.32 5.08 16 49 H 0.09 1.32 8.06 -51.93 -0.42 0.90 16 50 H 0.04 0.63 7.44 -51.93 -0.39 0.24 16 51 H 0.37 7.87 5.76 -40.82 -0.24 7.63 16 52 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 410.22 15.07 6.18 6.18 Total: -1.00 -35.45 410.22 -9.29 -44.74 By element: Atomic # 1 Polarization: 23.23 SS G_CDS: -8.91 Total: 14.32 kcal Atomic # 6 Polarization: 3.32 SS G_CDS: -1.84 Total: 1.47 kcal Atomic # 7 Polarization: -57.37 SS G_CDS: -0.18 Total: -57.55 kcal Atomic # 8 Polarization: -24.31 SS G_CDS: 0.18 Total: -24.14 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -4.71 Total: 14.97 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -35.45 -9.29 -44.74 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480808489.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.847 kcal (2) G-P(sol) polarization free energy of solvation -35.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds