Wall clock time and date at job start Tue Mar 31 2020 20:17:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.47239 * 2 1 4 4 C 1.52990 * 109.47540 * 120.00098 * 2 1 3 5 5 C 1.50703 * 109.47398 * 294.99993 * 4 2 1 6 6 O 1.21283 * 119.99488 * 359.97438 * 5 4 2 7 7 N 1.34777 * 120.00290 * 180.02562 * 5 4 2 8 8 C 1.46498 * 119.99828 * 180.27728 * 7 5 4 9 9 H 1.09000 * 109.50649 * 34.64007 * 8 7 5 10 10 C 1.53119 * 109.50063 * 274.52358 * 8 7 5 11 11 C 1.53126 * 109.15884 * 182.40746 * 10 8 7 12 12 C 1.53029 * 109.27931 * 57.65434 * 11 10 8 13 13 N 1.46853 * 109.52429 * 300.82232 * 12 11 10 14 14 C 1.46902 * 110.99995 * 185.84079 * 13 12 11 15 15 C 1.50705 * 109.47099 * 65.78579 * 14 13 12 16 16 O 1.21291 * 119.99981 * 0.02562 * 15 14 13 17 17 N 1.34770 * 119.99780 * 179.97438 * 15 14 13 18 18 C 1.37104 * 119.99868 * 180.02562 * 17 15 14 19 19 H 1.07998 * 119.99866 * 0.02562 * 18 17 15 20 20 C 1.38951 * 120.00027 * 180.02562 * 18 17 15 21 21 N 1.31415 * 119.99833 * 359.97438 * 20 18 17 22 22 Si 1.86793 * 120.00156 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47192 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47232 * 119.99589 * 22 20 18 25 25 H 1.48496 * 109.47336 * 239.99728 * 22 20 18 26 26 C 1.46840 * 111.19697 * 61.74273 * 13 12 11 27 27 C 1.53000 * 109.47127 * 240.00466 * 2 1 3 28 28 C 1.52997 * 117.50360 * 128.74438 * 27 2 1 29 29 C 1.53001 * 117.50023 * 60.07932 * 27 2 1 30 30 H 1.09000 * 109.47350 * 59.99163 * 1 2 3 31 31 H 1.08992 * 109.47316 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46745 * 300.00274 * 1 2 3 33 33 H 1.08998 * 109.47508 * 174.99793 * 4 2 1 34 34 H 1.09002 * 109.47337 * 55.00079 * 4 2 1 35 35 H 0.97001 * 119.99727 * 359.97438 * 7 5 4 36 36 H 1.09000 * 109.52176 * 302.30807 * 10 8 7 37 37 H 1.08998 * 109.52614 * 62.50099 * 10 8 7 38 38 H 1.09001 * 109.50126 * 297.70978 * 11 10 8 39 39 H 1.09001 * 109.49968 * 177.60087 * 11 10 8 40 40 H 1.08995 * 109.46543 * 180.80529 * 12 11 10 41 41 H 1.09001 * 109.45284 * 60.83215 * 12 11 10 42 42 H 1.08993 * 109.47024 * 185.78406 * 14 13 12 43 43 H 1.09004 * 109.46738 * 305.78889 * 14 13 12 44 44 H 0.97001 * 120.00339 * 359.97438 * 17 15 14 45 45 H 0.96999 * 120.00229 * 179.97438 * 21 20 18 46 46 H 1.09001 * 109.46177 * 178.24449 * 26 13 12 47 47 H 1.09000 * 109.46655 * 58.27574 * 26 13 12 48 48 H 1.09001 * 115.54558 * 274.41902 * 27 2 1 49 49 H 1.09002 * 117.49726 * 359.97438 * 28 27 2 50 50 H 1.08999 * 117.49838 * 145.02130 * 28 27 2 51 51 H 1.08998 * 117.50288 * 214.98102 * 29 27 2 52 52 H 1.09000 * 117.50036 * 0.02562 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2491 5 6 1.6415 0.0570 2.4766 6 8 1.0118 1.0874 2.3632 7 7 1.9856 -0.3914 3.7001 8 6 1.5928 0.3620 4.8935 9 1 0.6176 0.8205 4.7299 10 6 2.6306 1.4523 5.1742 11 6 2.2446 2.1954 6.4562 12 6 2.1503 1.1956 7.6108 13 7 1.1443 0.1737 7.2943 14 6 0.9273 -0.7233 8.4372 15 6 0.3134 0.0519 9.5746 16 8 0.0793 1.2349 9.4456 17 7 0.0237 -0.5698 10.7347 18 6 -0.5352 0.1352 11.7693 19 1 -0.7436 1.1886 11.6544 20 6 -0.8334 -0.5056 12.9656 21 7 -0.5802 -1.7876 13.1052 22 14 -1.5942 0.4550 14.3754 23 1 -1.7787 1.8708 13.9670 24 1 -2.9120 -0.1352 14.7223 25 1 -0.6975 0.3931 15.5574 26 6 1.5175 -0.5847 6.0936 27 6 2.0400 -0.7211 -1.2493 28 6 3.0762 0.0040 -2.1102 29 6 1.6373 -0.1482 -2.6096 30 1 -0.3634 0.5140 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 3.1263 -0.7994 1.2054 34 1 1.6055 -1.7198 1.2951 35 1 2.4895 -1.2153 3.7906 36 1 3.6129 0.9967 5.2990 37 1 2.6566 2.1538 4.3403 38 1 1.2798 2.6833 6.3175 39 1 3.0024 2.9449 6.6845 40 1 1.8617 1.7193 8.5221 41 1 3.1191 0.7182 7.7577 42 1 0.2560 -1.5302 8.1435 43 1 1.8816 -1.1424 8.7564 44 1 0.2099 -1.5162 10.8376 45 1 -0.7880 -2.2349 13.9404 46 1 0.7692 -1.3540 5.9028 47 1 2.4892 -1.0538 6.2477 48 1 2.1252 -1.8045 -1.1648 49 1 3.3944 0.9952 -1.7867 50 1 3.8430 -0.6023 -2.5923 51 1 1.4581 -0.8546 -3.4202 52 1 1.0093 0.7427 -2.6146 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481530319.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:32 Heat of formation + Delta-G solvation = -59.537737 kcal Electronic energy + Delta-G solvation = -29102.678095 eV Core-core repulsion = 25102.164227 eV Total energy + Delta-G solvation = -4000.513868 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.36707 -39.13183 -38.19002 -37.45534 -34.82781 -33.83559 -33.44577 -32.60727 -31.19885 -29.97404 -27.83650 -27.32717 -24.69345 -24.23159 -22.83038 -22.63378 -22.55199 -20.58636 -20.10833 -19.73749 -19.17283 -17.87029 -17.22291 -16.54407 -16.01831 -15.87128 -15.51671 -15.29015 -14.88966 -14.76249 -14.53122 -14.09657 -14.03291 -13.75175 -13.69129 -13.45834 -13.31907 -13.17989 -13.06674 -12.45199 -12.36457 -12.05070 -11.94374 -11.66262 -11.53977 -11.46047 -11.43130 -11.27477 -11.08596 -11.03993 -10.77662 -10.65253 -10.58562 -10.42884 -10.33355 -10.25798 -10.22114 -9.79268 -9.47101 -9.13356 -8.44305 -7.98028 -7.86331 -6.41765 -3.82374 2.51403 2.91633 3.16533 3.27301 3.34650 3.43549 3.90077 4.02327 4.22505 4.29505 4.39470 4.55654 4.60266 4.73202 4.81621 4.85356 4.95965 5.06012 5.09071 5.14568 5.23216 5.25043 5.28684 5.32576 5.36120 5.39290 5.53440 5.54400 5.59033 5.63183 5.64665 5.72728 5.76041 5.80905 5.89372 5.91331 6.00776 6.08148 6.09411 6.12819 6.20583 6.27000 6.38418 6.49282 6.57084 7.25094 7.36732 7.39266 7.55763 8.06937 8.11292 8.61924 9.18534 9.54599 10.06373 10.76072 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.031251 B = 0.001720 C = 0.001696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.749651 B =16272.953917 C =16501.693498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.044 4.044 3 H 0.078 0.922 4 C -0.135 4.135 5 C 0.513 3.487 6 O -0.533 6.533 7 N -0.728 5.728 8 C 0.148 3.852 9 H 0.099 0.901 10 C -0.127 4.127 11 C -0.111 4.111 12 C 0.050 3.950 13 N -0.511 5.511 14 C 0.048 3.952 15 C 0.444 3.556 16 O -0.575 6.575 17 N -0.565 5.565 18 C -0.298 4.298 19 H 0.104 0.896 20 C 0.022 3.978 21 N -0.902 5.902 22 Si 0.929 3.071 23 H -0.268 1.268 24 H -0.282 1.282 25 H -0.282 1.282 26 C 0.051 3.949 27 C -0.149 4.149 28 C -0.182 4.182 29 C -0.178 4.178 30 H 0.052 0.948 31 H 0.048 0.952 32 H 0.076 0.924 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.397 0.603 36 H 0.057 0.943 37 H 0.065 0.935 38 H 0.075 0.925 39 H 0.066 0.934 40 H 0.106 0.894 41 H 0.022 0.978 42 H 0.089 0.911 43 H 0.048 0.952 44 H 0.392 0.608 45 H 0.271 0.729 46 H 0.078 0.922 47 H 0.033 0.967 48 H 0.103 0.897 49 H 0.094 0.906 50 H 0.092 0.908 51 H 0.092 0.908 52 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.615 -3.095 -25.921 27.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.063 4.063 3 H 0.096 0.904 4 C -0.175 4.175 5 C 0.300 3.700 6 O -0.410 6.410 7 N -0.379 5.379 8 C 0.044 3.956 9 H 0.117 0.883 10 C -0.166 4.166 11 C -0.149 4.149 12 C -0.077 4.077 13 N -0.236 5.236 14 C -0.083 4.083 15 C 0.229 3.771 16 O -0.459 6.459 17 N -0.201 5.201 18 C -0.427 4.427 19 H 0.122 0.878 20 C -0.180 4.180 21 N -0.544 5.544 22 Si 0.756 3.244 23 H -0.192 1.192 24 H -0.208 1.208 25 H -0.208 1.208 26 C -0.078 4.078 27 C -0.167 4.167 28 C -0.219 4.219 29 C -0.215 4.215 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.095 0.905 33 H 0.111 0.889 34 H 0.111 0.889 35 H 0.231 0.769 36 H 0.075 0.925 37 H 0.084 0.916 38 H 0.094 0.906 39 H 0.085 0.915 40 H 0.124 0.876 41 H 0.040 0.960 42 H 0.107 0.893 43 H 0.066 0.934 44 H 0.225 0.775 45 H 0.080 0.920 46 H 0.096 0.904 47 H 0.051 0.949 48 H 0.121 0.879 49 H 0.112 0.888 50 H 0.110 0.890 51 H 0.111 0.889 52 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 8.512 -1.422 -26.011 27.405 hybrid contribution 0.845 -1.287 1.041 1.859 sum 9.357 -2.709 -24.970 26.803 Atomic orbital electron populations 1.21931 0.94270 1.01554 1.03082 1.20450 0.96513 0.98902 0.90402 0.90369 1.21723 1.02884 1.00243 0.92609 1.20668 0.79009 0.85822 0.84527 1.90693 1.39378 1.24427 1.86455 1.46091 1.57949 1.27890 1.05986 1.20943 0.99838 0.91804 0.83025 0.88320 1.21964 0.98109 0.97876 0.98635 1.21505 1.02383 0.97601 0.93419 1.22323 0.91529 0.93400 1.00486 1.61383 1.46000 1.13720 1.02459 1.21836 1.00040 0.95153 0.91304 1.19709 0.85151 0.88430 0.83787 1.90494 1.57623 1.15788 1.82019 1.41869 1.54977 1.11904 1.11386 1.19757 1.36384 0.95704 0.90879 0.87825 1.25256 0.97910 0.95848 0.98951 1.69620 1.48435 1.09049 1.27275 0.85803 0.78463 0.79752 0.80351 1.19207 1.20771 1.20808 1.22255 0.99443 0.95508 0.90595 1.22364 1.03620 0.99070 0.91690 1.23049 0.92499 1.02118 1.04277 1.22936 0.98065 1.03396 0.97103 0.92902 0.93282 0.90486 0.88915 0.88877 0.76922 0.92462 0.91603 0.90606 0.91489 0.87578 0.96018 0.89324 0.93444 0.77524 0.91959 0.90399 0.94893 0.87852 0.88782 0.88989 0.88948 0.88692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 8.78 37.16 0.33 -1.02 16 2 C -0.04 -0.34 2.19 -90.63 -0.20 -0.54 16 3 H 0.08 0.74 7.71 -51.93 -0.40 0.34 16 4 C -0.13 -0.92 5.16 -27.89 -0.14 -1.06 16 5 C 0.51 5.26 7.52 -10.98 -0.08 5.18 16 6 O -0.53 -7.59 13.63 5.55 0.08 -7.52 16 7 N -0.73 -6.66 5.08 -53.73 -0.27 -6.93 16 8 C 0.15 1.79 2.62 -67.85 -0.18 1.61 16 9 H 0.10 1.48 7.57 -51.93 -0.39 1.09 16 10 C -0.13 -1.54 5.58 -26.60 -0.15 -1.69 16 11 C -0.11 -1.54 6.09 -26.65 -0.16 -1.70 16 12 C 0.05 0.81 5.11 -3.83 -0.02 0.79 16 13 N -0.51 -8.38 4.40 -236.12 -1.04 -9.42 16 14 C 0.05 0.84 5.45 -4.97 -0.03 0.81 16 15 C 0.44 10.34 7.46 -10.99 -0.08 10.25 16 16 O -0.58 -15.31 13.90 5.55 0.08 -15.23 16 17 N -0.56 -14.15 5.29 -10.96 -0.06 -14.21 16 18 C -0.30 -8.24 9.68 -14.93 -0.14 -8.39 16 19 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 20 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 21 N -0.90 -24.40 13.05 55.50 0.72 -23.68 16 22 Si 0.93 21.00 29.55 -169.99 -5.02 15.98 16 23 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 24 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 25 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 26 C 0.05 0.63 4.93 -3.84 -0.02 0.61 16 27 C -0.15 -0.95 5.14 -90.62 -0.47 -1.41 16 28 C -0.18 -1.10 10.18 -26.69 -0.27 -1.37 16 29 C -0.18 -1.11 9.74 -26.69 -0.26 -1.37 16 30 H 0.05 0.44 7.29 -51.93 -0.38 0.06 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.08 0.88 5.95 -51.93 -0.31 0.57 16 33 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.40 2.47 8.60 -40.82 -0.35 2.12 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.11 2.10 5.78 -51.93 -0.30 1.80 16 41 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.09 1.40 7.99 -51.93 -0.41 0.98 16 43 H 0.05 0.75 8.12 -51.93 -0.42 0.33 16 44 H 0.39 9.38 7.90 -40.82 -0.32 9.05 16 45 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 46 H 0.08 0.90 8.02 -51.93 -0.42 0.49 16 47 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 48 H 0.10 0.57 8.11 -51.93 -0.42 0.15 16 49 H 0.09 0.59 8.05 -51.93 -0.42 0.17 16 50 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 51 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 52 H 0.09 0.62 7.61 -51.93 -0.40 0.23 16 LS Contribution 411.08 15.07 6.19 6.19 Total: -1.00 -32.20 411.08 -10.40 -42.60 By element: Atomic # 1 Polarization: 20.14 SS G_CDS: -9.10 Total: 11.03 kcal Atomic # 6 Polarization: 3.15 SS G_CDS: -1.97 Total: 1.18 kcal Atomic # 7 Polarization: -53.59 SS G_CDS: -0.64 Total: -54.24 kcal Atomic # 8 Polarization: -22.90 SS G_CDS: 0.15 Total: -22.75 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -32.20 -10.40 -42.60 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481530319.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.938 kcal (2) G-P(sol) polarization free energy of solvation -32.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds