Wall clock time and date at job start Tue Mar 31 2020 20:56:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46867 * 2 1 4 4 C 1.52993 * 109.47401 * 119.99970 * 2 1 3 5 5 N 1.46901 * 109.46977 * 295.00337 * 4 2 1 6 6 C 1.46902 * 110.99844 * 179.97438 * 5 4 2 7 7 C 1.50702 * 109.47027 * 179.97438 * 6 5 4 8 8 O 1.21293 * 120.00255 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99928 * 179.72353 * 7 6 5 10 10 C 1.37101 * 120.00327 * 180.27606 * 9 7 6 11 11 H 1.08001 * 119.99426 * 0.02562 * 10 9 7 12 12 C 1.38942 * 120.00412 * 180.02562 * 10 9 7 13 13 N 1.31414 * 120.00005 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 120.00057 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.46867 * 90.00263 * 14 12 10 16 16 H 1.48501 * 109.47216 * 210.00120 * 14 12 10 17 17 H 1.48499 * 109.47135 * 330.00462 * 14 12 10 18 18 C 1.53001 * 109.47291 * 240.00236 * 2 1 3 19 19 N 1.46500 * 109.46914 * 64.99875 * 18 2 1 20 20 C 1.34787 * 119.99655 * 179.97438 * 19 18 2 21 21 O 1.21278 * 119.99920 * 0.02562 * 20 19 18 22 22 C 1.50695 * 119.99806 * 179.97438 * 20 19 18 23 23 H 1.09007 * 115.57509 * 325.85124 * 22 20 19 24 24 C 1.52306 * 117.54029 * 111.81947 * 22 20 19 25 25 H 1.09004 * 115.90789 * 0.84643 * 24 22 20 26 26 C 1.52068 * 119.84279 * 217.19828 * 24 22 20 27 27 C 1.52874 * 110.51000 * 310.44617 * 26 24 22 28 28 C 1.53299 * 108.59181 * 305.10980 * 27 26 24 29 29 C 1.52873 * 108.58087 * 74.44614 * 28 27 26 30 30 C 1.52067 * 60.63907 * 107.37571 * 24 22 20 31 31 H 1.09002 * 116.54333 * 252.54519 * 30 24 22 32 32 H 1.08997 * 109.47455 * 299.99922 * 1 2 3 33 33 H 1.09000 * 109.47007 * 59.99806 * 1 2 3 34 34 H 1.08993 * 109.46935 * 179.97438 * 1 2 3 35 35 H 1.08997 * 109.47854 * 175.00226 * 4 2 1 36 36 H 1.09005 * 109.47140 * 55.00107 * 4 2 1 37 37 H 1.00895 * 111.00207 * 303.94924 * 5 4 2 38 38 H 1.09004 * 109.47131 * 60.00016 * 6 5 4 39 39 H 1.09000 * 109.47732 * 300.00127 * 6 5 4 40 40 H 0.97000 * 120.00317 * 0.28382 * 9 7 6 41 41 H 0.96996 * 120.00330 * 179.97438 * 13 12 10 42 42 H 1.08997 * 109.47156 * 184.99692 * 18 2 1 43 43 H 1.09002 * 109.47035 * 304.99816 * 18 2 1 44 44 H 0.96991 * 120.00585 * 359.97438 * 19 18 2 45 45 H 1.08996 * 109.26876 * 190.17775 * 26 24 22 46 46 H 1.09006 * 109.26914 * 70.70911 * 26 24 22 47 47 H 1.09008 * 109.61357 * 185.38054 * 27 26 24 48 48 H 1.08998 * 109.61843 * 64.84428 * 27 26 24 49 49 H 1.09003 * 109.61735 * 314.71399 * 28 27 26 50 50 H 1.09001 * 109.61589 * 194.17955 * 28 27 26 51 51 H 1.09003 * 109.35363 * 185.26948 * 29 28 27 52 52 H 1.08991 * 109.24435 * 65.61702 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.6514 0.0375 2.4456 6 6 2.1248 -0.6271 3.6671 7 6 1.7088 0.1787 4.8708 8 8 1.0794 1.2053 4.7254 9 7 2.0308 -0.2446 6.1092 10 6 1.6475 0.4854 7.2045 11 1 1.0871 1.3996 7.0749 12 6 1.9800 0.0494 8.4812 13 7 2.6623 -1.0626 8.6388 14 14 1.4583 1.0445 9.9735 15 1 0.1234 0.5843 10.4333 16 1 2.4489 0.8579 11.0639 17 1 1.3877 2.4825 9.6095 18 6 2.0400 -0.7212 -1.2493 19 7 1.6524 0.0355 -2.4424 20 6 1.9965 -0.4130 -3.6660 21 8 2.6266 -1.4430 -3.7793 22 6 1.5974 0.3651 -4.8933 23 1 0.6370 0.8774 -4.8340 24 6 2.7063 1.0353 -5.6938 25 1 3.7196 0.8871 -5.3203 26 6 2.4662 2.3975 -6.3257 27 6 1.1560 2.3990 -7.1135 28 6 1.1954 1.2519 -8.1297 29 6 0.9937 -0.0670 -7.3835 30 6 2.0191 -0.1977 -6.2595 31 1 2.5985 -1.1209 -6.2604 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 0.5139 -0.8900 34 1 -0.3633 -1.0276 -0.0005 35 1 3.1263 -0.7994 1.2056 36 1 1.6054 -1.7198 1.2951 37 1 1.9881 0.9873 2.3967 38 1 3.2117 -0.7050 3.6405 39 1 1.6905 -1.6249 3.7297 40 1 2.5339 -1.0657 6.2256 41 1 2.8947 -1.3669 9.5299 42 1 3.1263 -0.7994 -1.2056 43 1 1.6054 -1.7198 -1.2952 44 1 1.1483 0.8591 -2.3518 45 1 3.2908 2.6322 -6.9986 46 1 2.4156 3.1536 -5.5421 47 1 1.0453 3.3485 -7.6374 48 1 0.3185 2.2548 -6.4310 49 1 2.1616 1.2430 -8.6342 50 1 0.3986 1.3840 -8.8617 51 1 1.1126 -0.8975 -8.0794 52 1 -0.0107 -0.0907 -6.9609 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482093216.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:40 Heat of formation + Delta-G solvation = -78.349604 kcal Electronic energy + Delta-G solvation = -28045.161926 eV Core-core repulsion = 24043.832314 eV Total energy + Delta-G solvation = -4001.329612 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.83126 -39.01592 -38.33291 -37.13478 -34.88856 -33.86034 -33.55406 -32.27317 -31.25761 -31.19084 -27.50121 -27.27909 -25.62760 -24.67455 -23.27524 -23.02752 -22.18745 -20.81932 -20.16985 -19.22815 -18.92538 -17.90627 -17.68316 -16.47674 -15.97471 -15.88528 -15.68857 -15.32575 -14.80871 -14.72511 -14.54039 -14.43689 -14.35715 -14.00043 -13.89675 -13.64062 -13.44096 -13.16721 -12.80314 -12.66825 -12.57762 -12.37472 -12.25260 -11.93186 -11.68610 -11.60873 -11.51897 -11.36871 -11.15358 -11.07451 -10.98970 -10.88078 -10.76708 -10.39691 -10.32695 -10.25786 -10.21951 -9.95149 -9.51052 -9.29681 -8.46547 -8.05845 -7.95871 -6.41763 -3.82722 2.22384 2.84056 3.17825 3.26411 3.32146 3.36994 3.90806 4.07429 4.14841 4.23103 4.26322 4.30834 4.48556 4.54930 4.63354 4.70733 4.79078 4.84692 4.88730 4.95306 5.04425 5.11175 5.16979 5.22056 5.25801 5.33751 5.43086 5.46098 5.47115 5.49577 5.60884 5.63886 5.67498 5.72785 5.75704 5.79733 5.82382 5.86956 5.89155 5.94313 5.98680 6.09053 6.23699 6.26878 6.39101 7.19529 7.24562 7.55029 7.64723 7.98706 8.06228 8.61158 9.17735 9.54334 10.05676 10.75973 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.034575 B = 0.001399 C = 0.001373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.634294 B =20013.158466 C =20384.658089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.099 4.099 3 H 0.076 0.924 4 C 0.066 3.934 5 N -0.666 5.666 6 C 0.051 3.949 7 C 0.441 3.559 8 O -0.584 6.584 9 N -0.564 5.564 10 C -0.300 4.300 11 H 0.103 0.897 12 C 0.022 3.978 13 N -0.902 5.902 14 Si 0.930 3.070 15 H -0.278 1.278 16 H -0.284 1.284 17 H -0.270 1.270 18 C 0.124 3.876 19 N -0.723 5.723 20 C 0.541 3.459 21 O -0.543 6.543 22 C -0.193 4.193 23 H 0.123 0.877 24 C -0.110 4.110 25 H 0.103 0.897 26 C -0.091 4.091 27 C -0.124 4.124 28 C -0.120 4.120 29 C -0.091 4.091 30 C -0.110 4.110 31 H 0.115 0.885 32 H 0.077 0.923 33 H 0.044 0.956 34 H 0.053 0.947 35 H 0.029 0.971 36 H 0.074 0.926 37 H 0.348 0.652 38 H 0.043 0.957 39 H 0.086 0.914 40 H 0.392 0.608 41 H 0.271 0.729 42 H 0.066 0.934 43 H 0.069 0.931 44 H 0.402 0.598 45 H 0.072 0.928 46 H 0.070 0.930 47 H 0.066 0.934 48 H 0.064 0.936 49 H 0.066 0.934 50 H 0.064 0.936 51 H 0.070 0.930 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.802 2.775 -32.028 32.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.118 4.118 3 H 0.095 0.905 4 C -0.064 4.064 5 N -0.298 5.298 6 C -0.082 4.082 7 C 0.226 3.774 8 O -0.468 6.468 9 N -0.200 5.200 10 C -0.430 4.430 11 H 0.121 0.879 12 C -0.179 4.179 13 N -0.543 5.543 14 Si 0.757 3.243 15 H -0.204 1.204 16 H -0.209 1.209 17 H -0.194 1.194 18 C 0.000 4.000 19 N -0.374 5.374 20 C 0.327 3.673 21 O -0.421 6.421 22 C -0.214 4.214 23 H 0.141 0.859 24 C -0.128 4.128 25 H 0.122 0.878 26 C -0.128 4.128 27 C -0.162 4.162 28 C -0.158 4.158 29 C -0.129 4.129 30 C -0.128 4.128 31 H 0.133 0.867 32 H 0.096 0.904 33 H 0.063 0.937 34 H 0.072 0.928 35 H 0.047 0.953 36 H 0.093 0.907 37 H 0.167 0.833 38 H 0.061 0.939 39 H 0.104 0.896 40 H 0.225 0.775 41 H 0.081 0.919 42 H 0.085 0.915 43 H 0.088 0.912 44 H 0.236 0.764 45 H 0.091 0.909 46 H 0.088 0.912 47 H 0.085 0.915 48 H 0.082 0.918 49 H 0.085 0.915 50 H 0.083 0.917 51 H 0.089 0.911 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.326 2.341 -31.948 32.061 hybrid contribution 0.804 0.381 1.143 1.449 sum -0.522 2.722 -30.805 30.929 Atomic orbital electron populations 1.21755 0.93722 1.02170 1.02072 1.21338 0.97628 0.99936 0.92944 0.90532 1.21895 0.97333 0.97979 0.89225 1.60034 1.64167 1.05824 0.99782 1.21668 0.97759 0.98654 0.90109 1.19812 0.85556 0.87915 0.84088 1.90517 1.44106 1.26448 1.85757 1.41867 1.49511 1.24243 1.04411 1.19707 1.32851 1.06804 0.83604 0.87925 1.25260 0.96899 0.96647 0.99107 1.69612 1.38901 1.21734 1.24053 0.85856 0.78190 0.79904 0.80319 1.20384 1.20939 1.19438 1.21405 0.99975 0.95464 0.83158 1.45944 1.57961 1.27850 1.05663 1.19714 0.78793 0.84929 0.83821 1.90698 1.40235 1.24444 1.86687 1.22499 1.01508 1.05729 0.91633 0.85896 1.21880 0.96403 0.94091 1.00466 0.87839 1.20916 0.98174 0.94456 0.99267 1.21642 0.97670 0.98745 0.98122 1.21586 1.02139 0.94425 0.97624 1.21087 0.97723 0.98021 0.96022 1.22334 1.00576 0.98403 0.91530 0.86682 0.90398 0.93733 0.92794 0.95292 0.90733 0.83251 0.93893 0.89578 0.77452 0.91871 0.91548 0.91219 0.76369 0.90896 0.91171 0.91535 0.91757 0.91533 0.91728 0.91132 0.91398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 8.95 37.16 0.33 -1.08 16 2 C -0.10 -0.97 2.57 -90.62 -0.23 -1.20 16 3 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 4 C 0.07 0.77 5.07 -3.83 -0.02 0.75 16 5 N -0.67 -10.31 5.58 -115.06 -0.64 -10.96 16 6 C 0.05 0.89 6.17 -4.97 -0.03 0.86 16 7 C 0.44 10.37 7.82 -10.98 -0.09 10.29 16 8 O -0.58 -15.76 15.78 5.55 0.09 -15.67 16 9 N -0.56 -14.31 5.29 -10.96 -0.06 -14.37 16 10 C -0.30 -8.39 9.68 -14.93 -0.14 -8.54 16 11 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 12 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 13 N -0.90 -24.58 13.05 55.50 0.72 -23.85 16 14 Si 0.93 21.05 29.55 -169.99 -5.02 16.03 16 15 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 16 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 17 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 18 C 0.12 1.20 5.06 -4.04 -0.02 1.18 16 19 N -0.72 -6.28 5.28 -60.29 -0.32 -6.60 16 20 C 0.54 5.63 7.61 -10.98 -0.08 5.55 16 21 O -0.54 -7.81 16.26 5.56 0.09 -7.72 16 22 C -0.19 -1.44 5.32 -91.79 -0.49 -1.93 16 23 H 0.12 0.72 7.26 -51.93 -0.38 0.34 16 24 C -0.11 -0.74 5.70 -91.92 -0.52 -1.26 16 25 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 26 C -0.09 -0.45 5.93 -27.27 -0.16 -0.61 16 27 C -0.12 -0.55 5.70 -26.64 -0.15 -0.71 16 28 C -0.12 -0.55 5.93 -26.64 -0.16 -0.71 16 29 C -0.09 -0.51 5.83 -26.95 -0.16 -0.66 16 30 C -0.11 -0.81 5.71 -90.90 -0.52 -1.33 16 31 H 0.12 1.04 7.67 -51.93 -0.40 0.65 16 32 H 0.08 0.97 7.75 -51.93 -0.40 0.57 16 33 H 0.04 0.37 7.18 -51.93 -0.37 -0.01 16 34 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.35 5.56 8.43 -39.29 -0.33 5.23 16 38 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 40 H 0.39 9.53 7.90 -40.82 -0.32 9.21 16 41 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 42 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.40 2.62 7.65 -40.82 -0.31 2.31 16 45 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 47 H 0.07 0.25 8.14 -51.92 -0.42 -0.17 16 48 H 0.06 0.29 7.11 -51.93 -0.37 -0.08 16 49 H 0.07 0.31 8.04 -51.93 -0.42 -0.10 16 50 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 51 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 52 H 0.07 0.37 8.05 -51.93 -0.42 -0.05 16 LS Contribution 417.18 15.07 6.29 6.29 Total: -1.00 -32.84 417.18 -10.54 -43.39 By element: Atomic # 1 Polarization: 21.51 SS G_CDS: -9.15 Total: 12.36 kcal Atomic # 6 Polarization: 3.65 SS G_CDS: -2.54 Total: 1.11 kcal Atomic # 7 Polarization: -55.49 SS G_CDS: -0.29 Total: -55.78 kcal Atomic # 8 Polarization: -23.57 SS G_CDS: 0.18 Total: -23.39 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -32.84 -10.54 -43.39 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482093216.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.962 kcal (2) G-P(sol) polarization free energy of solvation -32.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds