Wall clock time and date at job start Tue Mar 31 2020 20:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46867 * 2 1 4 4 C 1.52993 * 109.47401 * 119.99970 * 2 1 3 5 5 N 1.46901 * 109.46977 * 295.00337 * 4 2 1 6 6 C 1.46902 * 110.99844 * 179.97438 * 5 4 2 7 7 C 1.50702 * 109.47027 * 179.97438 * 6 5 4 8 8 O 1.21293 * 120.00255 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99928 * 179.72353 * 7 6 5 10 10 C 1.37101 * 120.00327 * 180.27606 * 9 7 6 11 11 H 1.08001 * 119.99426 * 0.02562 * 10 9 7 12 12 C 1.38942 * 120.00412 * 180.02562 * 10 9 7 13 13 N 1.31414 * 120.00005 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 120.00057 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.46867 * 90.00263 * 14 12 10 16 16 H 1.48501 * 109.47216 * 210.00120 * 14 12 10 17 17 H 1.48499 * 109.47135 * 330.00462 * 14 12 10 18 18 C 1.53001 * 109.47291 * 240.00236 * 2 1 3 19 19 N 1.46500 * 109.46914 * 64.99875 * 18 2 1 20 20 C 1.34787 * 119.99655 * 179.97438 * 19 18 2 21 21 O 1.21278 * 119.99920 * 0.02562 * 20 19 18 22 22 C 1.50695 * 119.99806 * 179.97438 * 20 19 18 23 23 H 1.09007 * 115.57509 * 325.85124 * 22 20 19 24 24 C 1.52306 * 117.54029 * 111.81947 * 22 20 19 25 25 H 1.09004 * 115.90789 * 0.84643 * 24 22 20 26 26 C 1.52068 * 119.84279 * 217.19828 * 24 22 20 27 27 C 1.52874 * 110.51000 * 310.44617 * 26 24 22 28 28 C 1.53299 * 108.59181 * 305.10980 * 27 26 24 29 29 C 1.52873 * 108.58087 * 74.44614 * 28 27 26 30 30 C 1.52067 * 60.63907 * 107.37571 * 24 22 20 31 31 H 1.09002 * 116.54333 * 252.54519 * 30 24 22 32 32 H 1.08997 * 109.47455 * 299.99922 * 1 2 3 33 33 H 1.09000 * 109.47007 * 59.99806 * 1 2 3 34 34 H 1.08993 * 109.46935 * 179.97438 * 1 2 3 35 35 H 1.08997 * 109.47854 * 175.00226 * 4 2 1 36 36 H 1.09005 * 109.47140 * 55.00107 * 4 2 1 37 37 H 1.00895 * 111.00207 * 303.94924 * 5 4 2 38 38 H 1.09004 * 109.47131 * 60.00016 * 6 5 4 39 39 H 1.09000 * 109.47732 * 300.00127 * 6 5 4 40 40 H 0.97000 * 120.00317 * 0.28382 * 9 7 6 41 41 H 0.96996 * 120.00330 * 179.97438 * 13 12 10 42 42 H 1.08997 * 109.47156 * 184.99692 * 18 2 1 43 43 H 1.09002 * 109.47035 * 304.99816 * 18 2 1 44 44 H 0.96991 * 120.00585 * 359.97438 * 19 18 2 45 45 H 1.08996 * 109.26876 * 190.17775 * 26 24 22 46 46 H 1.09006 * 109.26914 * 70.70911 * 26 24 22 47 47 H 1.09008 * 109.61357 * 185.38054 * 27 26 24 48 48 H 1.08998 * 109.61843 * 64.84428 * 27 26 24 49 49 H 1.09003 * 109.61735 * 314.71399 * 28 27 26 50 50 H 1.09001 * 109.61589 * 194.17955 * 28 27 26 51 51 H 1.09003 * 109.35363 * 185.26948 * 29 28 27 52 52 H 1.08991 * 109.24435 * 65.61702 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.6514 0.0375 2.4456 6 6 2.1248 -0.6271 3.6671 7 6 1.7088 0.1787 4.8708 8 8 1.0794 1.2053 4.7254 9 7 2.0308 -0.2446 6.1092 10 6 1.6475 0.4854 7.2045 11 1 1.0871 1.3996 7.0749 12 6 1.9800 0.0494 8.4812 13 7 2.6623 -1.0626 8.6388 14 14 1.4583 1.0445 9.9735 15 1 0.1234 0.5843 10.4333 16 1 2.4489 0.8579 11.0639 17 1 1.3877 2.4825 9.6095 18 6 2.0400 -0.7212 -1.2493 19 7 1.6524 0.0355 -2.4424 20 6 1.9965 -0.4130 -3.6660 21 8 2.6266 -1.4430 -3.7793 22 6 1.5974 0.3651 -4.8933 23 1 0.6370 0.8774 -4.8340 24 6 2.7063 1.0353 -5.6938 25 1 3.7196 0.8871 -5.3203 26 6 2.4662 2.3975 -6.3257 27 6 1.1560 2.3990 -7.1135 28 6 1.1954 1.2519 -8.1297 29 6 0.9937 -0.0670 -7.3835 30 6 2.0191 -0.1977 -6.2595 31 1 2.5985 -1.1209 -6.2604 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 0.5139 -0.8900 34 1 -0.3633 -1.0276 -0.0005 35 1 3.1263 -0.7994 1.2056 36 1 1.6054 -1.7198 1.2951 37 1 1.9881 0.9873 2.3967 38 1 3.2117 -0.7050 3.6405 39 1 1.6905 -1.6249 3.7297 40 1 2.5339 -1.0657 6.2256 41 1 2.8947 -1.3669 9.5299 42 1 3.1263 -0.7994 -1.2056 43 1 1.6054 -1.7198 -1.2952 44 1 1.1483 0.8591 -2.3518 45 1 3.2908 2.6322 -6.9986 46 1 2.4156 3.1536 -5.5421 47 1 1.0453 3.3485 -7.6374 48 1 0.3185 2.2548 -6.4310 49 1 2.1616 1.2430 -8.6342 50 1 0.3986 1.3840 -8.8617 51 1 1.1126 -0.8975 -8.0794 52 1 -0.0107 -0.0907 -6.9609 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482093216.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:39 Heat of formation + Delta-G solvation = -100.744886 kcal Electronic energy + Delta-G solvation = -28046.133058 eV Core-core repulsion = 24043.832314 eV Total energy + Delta-G solvation = -4002.300744 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.50192 -40.19137 -39.64434 -38.19408 -36.19309 -35.65022 -34.06528 -33.40368 -33.10015 -31.67121 -28.89366 -28.07985 -26.79591 -25.88885 -24.42324 -23.44983 -22.90070 -21.69832 -21.16519 -20.75471 -19.89928 -19.46970 -18.38493 -17.81689 -17.10010 -17.01081 -16.58105 -16.48493 -16.22227 -15.92237 -15.56713 -15.31410 -15.19909 -14.93544 -14.84911 -14.65464 -14.46576 -14.32516 -13.94099 -13.55376 -13.41002 -13.24092 -13.17799 -13.12903 -13.01377 -12.84532 -12.73088 -12.41937 -12.12484 -12.06274 -12.02182 -11.97508 -11.74415 -11.73225 -11.50502 -11.20880 -10.98019 -10.80690 -10.59415 -10.34410 -10.11175 -10.01661 -9.30863 -8.46707 -5.95695 1.38288 1.42047 1.44605 1.54803 2.05168 2.08912 2.29725 2.77347 2.94387 3.20746 3.52030 3.59379 3.70589 3.76564 3.85139 3.92757 4.01544 4.05166 4.10528 4.19114 4.32404 4.37215 4.40209 4.47287 4.48308 4.57551 4.61193 4.62269 4.69218 4.74125 4.81922 4.83773 4.94490 4.99898 5.05932 5.07469 5.09719 5.25026 5.27644 5.32707 5.35700 5.40819 5.43226 5.43860 5.52387 5.54008 5.88009 6.09416 6.41063 6.52586 6.59864 7.12392 7.21586 7.56173 8.11171 8.70683 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.034575 B = 0.001399 C = 0.001373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.634294 B =20013.158466 C =20384.658089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.086 4.086 3 H 0.084 0.916 4 C 0.066 3.934 5 N -0.676 5.676 6 C 0.065 3.935 7 C 0.438 3.562 8 O -0.622 6.622 9 N -0.574 5.574 10 C -0.335 4.335 11 H 0.080 0.920 12 C -0.013 4.013 13 N -0.921 5.921 14 Si 0.993 3.007 15 H -0.271 1.271 16 H -0.271 1.271 17 H -0.272 1.272 18 C 0.131 3.869 19 N -0.711 5.711 20 C 0.536 3.464 21 O -0.589 6.589 22 C -0.191 4.191 23 H 0.146 0.854 24 C -0.101 4.101 25 H 0.089 0.911 26 C -0.088 4.088 27 C -0.123 4.123 28 C -0.118 4.118 29 C -0.088 4.088 30 C -0.116 4.116 31 H 0.091 0.909 32 H 0.054 0.946 33 H 0.064 0.936 34 H 0.049 0.951 35 H 0.040 0.960 36 H 0.077 0.923 37 H 0.345 0.655 38 H 0.065 0.935 39 H 0.102 0.898 40 H 0.396 0.604 41 H 0.277 0.723 42 H 0.060 0.940 43 H 0.061 0.939 44 H 0.415 0.585 45 H 0.077 0.923 46 H 0.077 0.923 47 H 0.077 0.923 48 H 0.066 0.934 49 H 0.064 0.936 50 H 0.074 0.926 51 H 0.071 0.929 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.207 3.571 -32.982 33.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.105 4.105 3 H 0.102 0.898 4 C -0.063 4.063 5 N -0.308 5.308 6 C -0.068 4.068 7 C 0.226 3.774 8 O -0.509 6.509 9 N -0.211 5.211 10 C -0.465 4.465 11 H 0.098 0.902 12 C -0.212 4.212 13 N -0.562 5.562 14 Si 0.817 3.183 15 H -0.197 1.197 16 H -0.196 1.196 17 H -0.197 1.197 18 C 0.007 3.993 19 N -0.363 5.363 20 C 0.324 3.676 21 O -0.470 6.470 22 C -0.212 4.212 23 H 0.163 0.837 24 C -0.120 4.120 25 H 0.107 0.893 26 C -0.125 4.125 27 C -0.160 4.160 28 C -0.156 4.156 29 C -0.126 4.126 30 C -0.135 4.135 31 H 0.109 0.891 32 H 0.073 0.927 33 H 0.083 0.917 34 H 0.069 0.931 35 H 0.058 0.942 36 H 0.096 0.904 37 H 0.163 0.837 38 H 0.083 0.917 39 H 0.120 0.880 40 H 0.230 0.770 41 H 0.087 0.913 42 H 0.078 0.922 43 H 0.080 0.920 44 H 0.252 0.748 45 H 0.096 0.904 46 H 0.096 0.904 47 H 0.095 0.905 48 H 0.085 0.915 49 H 0.082 0.918 50 H 0.093 0.907 51 H 0.090 0.910 52 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.737 3.138 -32.911 33.106 hybrid contribution 0.948 0.103 1.391 1.686 sum -0.789 3.241 -31.520 31.696 Atomic orbital electron populations 1.21701 0.93803 1.01893 1.01919 1.21192 0.97327 1.00033 0.91956 0.89776 1.21965 0.98141 0.97828 0.88356 1.60027 1.64659 1.05933 1.00223 1.21525 0.99075 0.98040 0.88143 1.20872 0.83901 0.87613 0.85063 1.90485 1.45522 1.28342 1.86511 1.41942 1.50054 1.24357 1.04742 1.19685 1.34420 1.07078 0.85294 0.90246 1.26042 0.96413 0.97551 1.01219 1.69674 1.38977 1.22481 1.25033 0.84922 0.78232 0.78179 0.76969 1.19672 1.19560 1.19692 1.21245 0.99493 0.95200 0.83396 1.45857 1.57415 1.28029 1.04995 1.20227 0.77969 0.84495 0.84873 1.90678 1.42411 1.26562 1.87356 1.22526 1.02658 1.05754 0.90254 0.83683 1.21904 0.95421 0.94923 0.99791 0.89269 1.20937 0.98855 0.93170 0.99556 1.21653 0.97220 0.99120 0.98054 1.21584 1.02429 0.93819 0.97753 1.21090 0.97187 0.98844 0.95457 1.22334 1.01082 0.97794 0.92247 0.89100 0.92720 0.91676 0.93143 0.94176 0.90411 0.83659 0.91686 0.87967 0.77008 0.91312 0.92188 0.92034 0.74821 0.90401 0.90437 0.90477 0.91518 0.91758 0.90691 0.91039 0.90949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 8.95 71.98 0.64 -1.91 16 2 C -0.09 -1.54 2.57 -10.80 -0.03 -1.57 16 3 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 4 C 0.07 1.45 5.07 86.30 0.44 1.89 16 5 N -0.68 -20.23 5.58 -517.93 -2.89 -23.12 16 6 C 0.06 2.18 6.17 85.56 0.53 2.71 16 7 C 0.44 20.74 7.82 87.66 0.69 21.43 16 8 O -0.62 -34.19 15.78 -3.07 -0.05 -34.24 16 9 N -0.57 -29.50 5.29 -306.98 -1.62 -31.12 16 10 C -0.34 -19.09 9.68 84.04 0.81 -18.28 16 11 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 12 C -0.01 -0.67 5.50 84.92 0.47 -0.20 16 13 N -0.92 -49.81 13.05 21.66 0.28 -49.52 16 14 Si 0.99 42.90 29.55 68.60 2.03 44.93 16 15 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 16 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 17 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 18 C 0.13 2.39 5.06 86.38 0.44 2.83 16 19 N -0.71 -11.42 5.28 -463.05 -2.45 -13.87 16 20 C 0.54 10.91 7.61 87.65 0.67 11.57 16 21 O -0.59 -17.30 16.26 -3.02 -0.05 -17.35 16 22 C -0.19 -2.65 5.32 -11.55 -0.06 -2.71 16 23 H 0.15 1.35 7.26 -2.38 -0.02 1.33 16 24 C -0.10 -1.28 5.70 -11.64 -0.07 -1.35 16 25 H 0.09 1.38 8.14 -2.38 -0.02 1.36 16 26 C -0.09 -0.71 5.93 30.24 0.18 -0.53 16 27 C -0.12 -0.80 5.70 30.65 0.17 -0.62 16 28 C -0.12 -0.86 5.93 30.65 0.18 -0.68 16 29 C -0.09 -0.88 5.83 30.46 0.18 -0.70 16 30 C -0.12 -1.67 5.71 -10.98 -0.06 -1.73 16 31 H 0.09 1.76 7.67 -2.39 -0.02 1.74 16 32 H 0.05 1.31 7.75 -2.39 -0.02 1.30 16 33 H 0.06 0.94 7.18 -2.39 -0.02 0.92 16 34 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.04 0.81 8.14 -2.39 -0.02 0.80 16 36 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 37 H 0.34 10.75 8.43 -89.70 -0.76 9.99 16 38 H 0.07 1.94 8.14 -2.38 -0.02 1.92 16 39 H 0.10 3.16 8.14 -2.39 -0.02 3.14 16 40 H 0.40 19.37 7.90 -92.71 -0.73 18.64 16 41 H 0.28 14.05 8.31 -92.71 -0.77 13.28 16 42 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 44 H 0.41 4.49 7.65 -92.71 -0.71 3.78 16 45 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 46 H 0.08 0.54 8.14 -2.38 -0.02 0.52 16 47 H 0.08 0.37 8.14 -2.38 -0.02 0.35 16 48 H 0.07 0.42 7.11 -2.39 -0.02 0.40 16 49 H 0.06 0.50 8.04 -2.39 -0.02 0.49 16 50 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 51 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 52 H 0.07 0.66 8.05 -2.39 -0.02 0.64 16 Total: -1.00 -71.98 417.18 -0.84 -72.82 By element: Atomic # 1 Polarization: 42.58 SS G_CDS: -1.27 Total: 41.31 kcal Atomic # 6 Polarization: 4.99 SS G_CDS: 5.18 Total: 10.16 kcal Atomic # 7 Polarization: -110.96 SS G_CDS: -6.68 Total: -117.64 kcal Atomic # 8 Polarization: -51.49 SS G_CDS: -0.10 Total: -51.59 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Total: -71.98 -0.84 -72.82 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482093216.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.927 kcal (2) G-P(sol) polarization free energy of solvation -71.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds