Wall clock time and date at job start Tue Mar 31 2020 20:03:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.47450 * 2 1 4 4 C 1.52998 * 109.46747 * 239.99931 * 2 1 3 5 5 C 1.53004 * 109.47168 * 174.99970 * 4 2 1 6 6 N 1.46897 * 109.47203 * 180.02562 * 5 4 2 7 7 C 1.46907 * 111.00057 * 180.02562 * 6 5 4 8 8 C 1.50699 * 109.47161 * 180.02562 * 7 6 5 9 9 O 1.21294 * 119.99959 * 359.97438 * 8 7 6 10 10 N 1.34773 * 119.99927 * 179.97438 * 8 7 6 11 11 C 1.37094 * 120.00103 * 179.97438 * 10 8 7 12 12 H 1.07993 * 119.99987 * 0.02562 * 11 10 8 13 13 C 1.38957 * 119.99989 * 180.02562 * 11 10 8 14 14 N 1.31405 * 120.00076 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 119.99825 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47233 * 89.99926 * 15 13 11 17 17 H 1.48502 * 109.46830 * 210.00050 * 15 13 11 18 18 H 1.48501 * 109.46986 * 329.99711 * 15 13 11 19 19 N 1.46504 * 109.46943 * 120.00407 * 2 1 3 20 20 C 1.34779 * 119.99661 * 274.99598 * 19 2 1 21 21 O 1.21608 * 119.99823 * 0.02562 * 20 19 2 22 22 C 1.47102 * 119.99743 * 180.02562 * 20 19 2 23 23 C 1.32987 * 120.00071 * 186.98427 * 22 20 19 24 24 C 1.51270 * 120.84605 * 12.16996 * 23 22 20 25 25 C 1.53673 * 108.30752 * 128.61895 * 24 23 22 26 26 C 1.52958 * 109.32454 * 54.85877 * 25 24 23 27 27 C 1.52954 * 109.81794 * 296.27375 * 26 25 24 28 28 C 1.51268 * 120.85226 * 192.45160 * 23 22 20 29 29 H 1.09003 * 109.46686 * 300.00103 * 1 2 3 30 30 H 1.09005 * 109.46695 * 59.99826 * 1 2 3 31 31 H 1.08998 * 109.47450 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47475 * 55.00225 * 4 2 1 33 33 H 1.08997 * 109.47503 * 294.99976 * 4 2 1 34 34 H 1.09000 * 109.46593 * 60.00330 * 5 4 2 35 35 H 1.08994 * 109.47194 * 300.00814 * 5 4 2 36 36 H 1.00908 * 110.99978 * 303.95285 * 6 5 4 37 37 H 1.08999 * 109.46268 * 300.00065 * 7 6 5 38 38 H 1.08992 * 109.47062 * 59.99629 * 7 6 5 39 39 H 0.97006 * 120.00103 * 0.02562 * 10 8 7 40 40 H 0.96999 * 120.00099 * 180.02562 * 14 13 11 41 41 H 0.96996 * 120.00119 * 94.99624 * 19 2 1 42 42 H 1.07997 * 119.99737 * 6.98537 * 22 20 19 43 43 H 1.09004 * 109.62891 * 248.38269 * 24 23 22 44 44 H 1.08992 * 109.62808 * 8.96213 * 24 23 22 45 45 H 1.08995 * 109.62471 * 294.84069 * 25 24 23 46 46 H 1.09006 * 109.41348 * 174.75082 * 25 24 23 47 47 H 1.08998 * 109.41054 * 176.16028 * 26 25 24 48 48 H 1.09002 * 109.41143 * 56.37939 * 26 25 24 49 49 H 1.08997 * 109.48096 * 303.61678 * 27 26 25 50 50 H 1.09002 * 109.48268 * 183.57667 * 27 26 25 51 51 H 1.08997 * 109.62436 * 351.03726 * 28 23 22 52 52 H 1.09002 * 109.62732 * 111.60932 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6134 -1.3138 6 7 4.0544 -1.3053 -2.5135 7 6 5.5180 -1.2228 -2.6085 8 6 5.9822 -1.9416 -3.8491 9 8 5.1734 -2.4710 -4.5817 10 7 7.2961 -1.9962 -4.1444 11 6 7.7184 -2.6506 -5.2726 12 1 6.9983 -3.1219 -5.9250 13 6 9.0731 -2.7073 -5.5768 14 7 9.9493 -2.1334 -4.7833 15 14 9.6485 -3.5983 -7.1145 16 1 9.6865 -2.6461 -8.2533 17 1 11.0075 -4.1519 -6.8865 18 1 8.7089 -4.7053 -7.4259 19 7 2.0184 -0.6907 1.1962 20 6 2.1471 -0.0184 2.3571 21 8 1.8575 1.1615 2.4118 22 6 2.6380 -0.7117 3.5581 23 6 2.6342 -0.0895 4.7334 24 6 1.8884 1.2134 4.9188 25 6 0.9810 1.0790 6.1517 26 6 1.8238 0.6587 7.3570 27 6 2.4240 -0.7267 7.1124 28 6 3.3809 -0.6632 5.9172 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6054 -0.2618 -2.1370 33 1 1.7516 -1.7715 -1.2056 34 1 3.9994 -1.0729 -0.4261 35 1 3.8532 0.4368 -1.3573 36 1 3.7449 -2.2657 -2.5287 37 1 5.8202 -0.1769 -2.6605 38 1 5.9659 -1.6872 -1.7300 39 1 7.9430 -1.5732 -3.5582 40 1 10.8949 -2.1727 -4.9959 41 1 2.2490 -1.6319 1.1526 42 1 3.0014 -1.7261 3.4852 43 1 2.6005 2.0245 5.0716 44 1 1.2815 1.4166 4.0366 45 1 0.2159 0.3260 5.9628 46 1 0.5049 2.0377 6.3575 47 1 1.1944 0.6291 8.2465 48 1 2.6269 1.3802 7.5067 49 1 1.6247 -1.4369 6.9008 50 1 2.9706 -1.0478 7.9990 51 1 3.7332 -1.6662 5.6767 52 1 4.2287 -0.0229 6.1607 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482815620.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:03:43 Heat of formation + Delta-G solvation = -102.842682 kcal Electronic energy + Delta-G solvation = -28308.626936 eV Core-core repulsion = 24306.235224 eV Total energy + Delta-G solvation = -4002.391711 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.12196 -40.16849 -39.12254 -37.82954 -36.28110 -35.68963 -33.74485 -33.28847 -32.52491 -31.86292 -30.33760 -27.84204 -27.71641 -25.79666 -23.93729 -23.63699 -22.86424 -21.76157 -21.36156 -21.05740 -19.92419 -19.50692 -17.99896 -17.84467 -17.27976 -16.92010 -16.50676 -16.17918 -16.03300 -15.94408 -15.42090 -15.29727 -15.13449 -15.08664 -14.94147 -14.48101 -14.40033 -14.14119 -13.80733 -13.61957 -13.52357 -13.49350 -13.38519 -13.12384 -12.91051 -12.80788 -12.72018 -12.42792 -12.26056 -12.13057 -12.05025 -11.99416 -11.81560 -11.77239 -11.62033 -11.51217 -11.18839 -10.42012 -10.34886 -10.03442 -10.02520 -9.80722 -9.32921 -8.47228 -5.96304 0.40969 1.38237 1.42068 1.54945 2.03940 2.28930 2.31485 2.33465 2.88274 3.19925 3.48891 3.71626 3.79377 3.89216 4.02206 4.04971 4.07375 4.20335 4.22295 4.30062 4.35005 4.43932 4.46159 4.47435 4.50617 4.52893 4.61644 4.64665 4.68079 4.78042 4.83129 4.93855 4.99635 5.04802 5.09263 5.13645 5.17593 5.18568 5.20033 5.30995 5.34706 5.40455 5.43992 5.58142 5.65782 5.76571 5.87729 6.08934 6.42459 6.59018 6.65591 7.11613 7.34879 7.55024 8.10024 8.70172 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.016661 B = 0.001671 C = 0.001552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.139100 B =16754.006017 C =18033.650080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.149 3.851 3 H 0.070 0.930 4 C -0.113 4.113 5 C 0.064 3.936 6 N -0.682 5.682 7 C 0.065 3.935 8 C 0.437 3.563 9 O -0.622 6.622 10 N -0.573 5.573 11 C -0.336 4.336 12 H 0.080 0.920 13 C -0.013 4.013 14 N -0.921 5.921 15 Si 0.995 3.005 16 H -0.272 1.272 17 H -0.270 1.270 18 H -0.272 1.272 19 N -0.712 5.712 20 C 0.542 3.458 21 O -0.576 6.576 22 C -0.245 4.245 23 C -0.019 4.019 24 C -0.123 4.123 25 C -0.114 4.114 26 C -0.123 4.123 27 C -0.115 4.115 28 C -0.093 4.093 29 H 0.044 0.956 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.039 0.961 35 H 0.065 0.935 36 H 0.346 0.654 37 H 0.098 0.902 38 H 0.066 0.934 39 H 0.396 0.604 40 H 0.278 0.722 41 H 0.411 0.589 42 H 0.149 0.851 43 H 0.068 0.932 44 H 0.097 0.903 45 H 0.058 0.942 46 H 0.067 0.933 47 H 0.072 0.928 48 H 0.064 0.936 49 H 0.063 0.937 50 H 0.081 0.919 51 H 0.087 0.913 52 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.966 3.325 26.068 30.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.044 3.956 3 H 0.088 0.912 4 C -0.151 4.151 5 C -0.065 4.065 6 N -0.315 5.315 7 C -0.068 4.068 8 C 0.225 3.775 9 O -0.509 6.509 10 N -0.210 5.210 11 C -0.465 4.465 12 H 0.098 0.902 13 C -0.213 4.213 14 N -0.561 5.561 15 Si 0.818 3.182 16 H -0.197 1.197 17 H -0.195 1.195 18 H -0.197 1.197 19 N -0.363 5.363 20 C 0.333 3.667 21 O -0.459 6.459 22 C -0.266 4.266 23 C -0.020 4.020 24 C -0.160 4.160 25 C -0.151 4.151 26 C -0.161 4.161 27 C -0.153 4.153 28 C -0.130 4.130 29 H 0.064 0.936 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.104 0.896 33 H 0.100 0.900 34 H 0.057 0.943 35 H 0.083 0.917 36 H 0.165 0.835 37 H 0.116 0.884 38 H 0.084 0.916 39 H 0.230 0.770 40 H 0.087 0.913 41 H 0.247 0.753 42 H 0.167 0.833 43 H 0.087 0.913 44 H 0.115 0.885 45 H 0.076 0.924 46 H 0.086 0.914 47 H 0.091 0.909 48 H 0.082 0.918 49 H 0.082 0.918 50 H 0.100 0.900 51 H 0.106 0.894 52 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -16.601 4.337 25.162 30.455 hybrid contribution 1.216 -1.026 -0.046 1.592 sum -15.384 3.310 25.116 29.639 Atomic orbital electron populations 1.22089 0.94324 1.02733 1.02184 1.20842 0.94490 0.96712 0.83599 0.91159 1.21763 0.94079 1.02065 0.97220 1.21995 0.95703 0.98989 0.89826 1.60066 1.08486 1.21905 1.41029 1.21516 0.89833 1.01141 0.94277 1.20857 0.82356 0.84832 0.89453 1.90486 1.54133 1.52099 1.54165 1.41942 1.06316 1.49249 1.23522 1.19691 0.92396 1.32114 1.02320 0.90222 1.26064 0.95151 0.98083 1.02002 1.69672 1.02954 1.44516 1.38993 0.84905 0.77628 0.78270 0.77394 1.19716 1.19493 1.19657 1.46009 1.66646 1.14418 1.09215 1.18965 0.76655 0.86415 0.84618 1.90613 1.52809 1.17647 1.84811 1.22438 1.10137 1.02105 0.91892 1.22953 0.90055 0.94703 0.94336 1.21602 0.99114 0.94552 1.00723 1.21651 0.97699 1.01577 0.94209 1.21573 0.99623 0.97177 0.97692 1.21577 0.98746 0.97283 0.97646 1.21047 0.97628 1.01940 0.92414 0.93642 0.90717 0.91346 0.89584 0.89985 0.94266 0.91677 0.83471 0.88361 0.91592 0.77007 0.91276 0.75263 0.83322 0.91341 0.88550 0.92355 0.91447 0.90914 0.91768 0.91790 0.90040 0.89443 0.89256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.52 9.48 71.98 0.68 -1.84 16 2 C 0.15 2.66 2.57 44.99 0.12 2.77 16 3 H 0.07 1.57 7.58 -2.39 -0.02 1.55 16 4 C -0.11 -2.03 5.01 30.59 0.15 -1.87 16 5 C 0.06 1.43 5.57 86.30 0.48 1.91 16 6 N -0.68 -20.98 6.13 -517.94 -3.17 -24.15 16 7 C 0.06 2.24 6.17 85.56 0.53 2.77 16 8 C 0.44 20.94 7.82 87.66 0.69 21.63 16 9 O -0.62 -34.54 15.78 -3.07 -0.05 -34.59 16 10 N -0.57 -29.64 5.29 -306.99 -1.62 -31.26 16 11 C -0.34 -19.17 9.68 84.04 0.81 -18.36 16 12 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 13 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 14 N -0.92 -49.83 13.05 21.66 0.28 -49.54 16 15 Si 0.99 42.93 29.55 68.60 2.03 44.96 16 16 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 17 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 18 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 19 N -0.71 -11.69 4.53 -446.12 -2.02 -13.71 16 20 C 0.54 11.22 7.58 86.57 0.66 11.88 16 21 O -0.58 -15.84 12.88 -4.06 -0.05 -15.89 16 22 C -0.25 -3.90 9.65 23.43 0.23 -3.67 16 23 C -0.02 -0.29 5.38 -17.26 -0.09 -0.38 16 24 C -0.12 -2.22 5.32 30.26 0.16 -2.06 16 25 C -0.11 -1.54 5.95 30.81 0.18 -1.35 16 26 C -0.12 -1.23 5.81 30.56 0.18 -1.05 16 27 C -0.12 -1.00 5.94 30.66 0.18 -0.82 16 28 C -0.09 -0.96 6.04 30.11 0.18 -0.78 16 29 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 31 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.04 0.80 7.75 -2.39 -0.02 0.78 16 35 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.35 10.82 8.43 -89.69 -0.76 10.06 16 37 H 0.10 3.17 8.14 -2.39 -0.02 3.15 16 38 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.40 19.47 7.90 -92.70 -0.73 18.74 16 40 H 0.28 14.05 8.31 -92.71 -0.77 13.28 16 41 H 0.41 4.83 8.59 -92.71 -0.80 4.04 16 42 H 0.15 1.58 7.96 -2.91 -0.02 1.55 16 43 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 44 H 0.10 2.28 4.79 -17.30 -0.08 2.20 16 45 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 46 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 47 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 48 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 49 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 50 H 0.08 0.50 8.14 -2.39 -0.02 0.49 16 51 H 0.09 0.70 7.92 -2.39 -0.02 0.68 16 52 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -71.15 418.65 -0.43 -71.58 By element: Atomic # 1 Polarization: 45.51 SS G_CDS: -1.43 Total: 44.09 kcal Atomic # 6 Polarization: 2.92 SS G_CDS: 5.60 Total: 8.52 kcal Atomic # 7 Polarization: -112.14 SS G_CDS: -6.53 Total: -118.67 kcal Atomic # 8 Polarization: -50.38 SS G_CDS: -0.10 Total: -50.48 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Total: -71.15 -0.43 -71.58 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482815620.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.261 kcal (2) G-P(sol) polarization free energy of solvation -71.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds