Wall clock time and date at job start Tue Mar 31 2020 20:03:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09008 * 109.46899 * 2 1 4 4 C 1.53000 * 109.47527 * 120.00132 * 2 1 3 5 5 C 1.52997 * 109.47207 * 185.00140 * 4 2 1 6 6 N 1.46900 * 109.46981 * 180.02562 * 5 4 2 7 7 C 1.46902 * 111.00100 * 180.02562 * 6 5 4 8 8 C 1.50693 * 109.47387 * 179.97438 * 7 6 5 9 9 O 1.21299 * 119.99855 * 0.02562 * 8 7 6 10 10 N 1.34780 * 120.00311 * 179.97438 * 8 7 6 11 11 C 1.37095 * 120.00044 * 180.02562 * 10 8 7 12 12 H 1.08002 * 119.99980 * 359.97438 * 11 10 8 13 13 C 1.38950 * 120.00175 * 180.02562 * 11 10 8 14 14 N 1.31412 * 119.99776 * 0.02562 * 13 11 10 15 15 Si 1.86795 * 120.00507 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46896 * 59.99852 * 15 13 11 17 17 H 1.48498 * 109.47654 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47139 * 300.00151 * 15 13 11 19 19 N 1.46502 * 109.47426 * 240.00454 * 2 1 3 20 20 C 1.34776 * 120.00193 * 84.99229 * 19 2 1 21 21 O 1.21611 * 119.99834 * 0.02562 * 20 19 2 22 22 C 1.47105 * 120.00342 * 180.02562 * 20 19 2 23 23 C 1.32992 * 120.00398 * 186.99000 * 22 20 19 24 24 C 1.51273 * 120.84584 * 12.16727 * 23 22 20 25 25 C 1.53666 * 108.30916 * 128.61914 * 24 23 22 26 26 C 1.52966 * 109.32388 * 54.86011 * 25 24 23 27 27 C 1.52964 * 109.81407 * 296.27373 * 26 25 24 28 28 C 1.51264 * 120.85325 * 192.44870 * 23 22 20 29 29 H 1.09006 * 109.47142 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47511 * 59.99939 * 1 2 3 31 31 H 1.08997 * 109.47512 * 299.99301 * 1 2 3 32 32 H 1.09002 * 109.47000 * 305.00288 * 4 2 1 33 33 H 1.09001 * 109.46572 * 65.00394 * 4 2 1 34 34 H 1.09002 * 109.47261 * 299.99988 * 5 4 2 35 35 H 1.09000 * 109.47326 * 59.99842 * 5 4 2 36 36 H 1.00898 * 111.00202 * 303.95232 * 6 5 4 37 37 H 1.09000 * 109.47006 * 299.99987 * 7 6 5 38 38 H 1.08999 * 109.47106 * 59.99756 * 7 6 5 39 39 H 0.96997 * 119.99822 * 0.02562 * 10 8 7 40 40 H 0.97004 * 120.00499 * 180.02562 * 14 13 11 41 41 H 0.97001 * 120.00097 * 265.00455 * 19 2 1 42 42 H 1.08003 * 119.99202 * 6.98759 * 22 20 19 43 43 H 1.09001 * 109.62355 * 248.38711 * 24 23 22 44 44 H 1.08998 * 109.62822 * 8.96070 * 24 23 22 45 45 H 1.09000 * 109.63031 * 294.84472 * 25 24 23 46 46 H 1.08998 * 109.41869 * 174.74769 * 25 24 23 47 47 H 1.08995 * 109.41604 * 176.17039 * 26 25 24 48 48 H 1.09002 * 109.41161 * 56.37503 * 26 25 24 49 49 H 1.08997 * 109.48425 * 303.61443 * 27 26 25 50 50 H 1.09003 * 109.48040 * 183.57979 * 27 26 25 51 51 H 1.09006 * 109.62488 * 351.04078 * 28 23 22 52 52 H 1.09009 * 109.62348 * 111.60444 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5648 -0.6132 1.3136 6 7 4.0546 -1.3063 2.5127 7 6 5.5181 -1.2227 2.6082 8 6 5.9826 -1.9425 3.8479 9 8 5.1740 -2.4735 4.5797 10 7 7.2965 -1.9973 4.1430 11 6 7.7191 -2.6527 5.2706 12 1 6.9990 -3.1248 5.9227 13 6 9.0736 -2.7088 5.5752 14 7 9.9496 -2.1331 4.7827 15 14 9.6494 -3.6011 7.1119 16 1 9.2386 -5.0264 7.0399 17 1 11.1287 -3.5161 7.2089 18 1 9.0383 -2.9698 8.3092 19 7 2.0184 -0.6905 -1.1962 20 6 2.1470 -0.0181 -2.3572 21 8 1.8580 1.1619 -2.4116 22 6 2.6369 -0.7116 -3.5585 23 6 2.8962 -0.0216 -4.6654 24 6 2.9600 1.4896 -4.6403 25 6 4.2795 1.9279 -5.2946 26 6 4.3786 1.3165 -6.6933 27 6 4.4363 -0.2085 -6.5897 28 6 3.1285 -0.7274 -5.9830 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 0.5137 0.8900 32 1 1.6054 -0.2618 2.1369 33 1 1.7517 -1.7715 1.2054 34 1 3.9995 -1.0727 0.4258 35 1 3.8532 0.4370 1.3572 36 1 3.6169 -0.9415 3.3453 37 1 5.9666 -1.6857 1.7292 38 1 5.8196 -0.1766 2.6615 39 1 7.9432 -1.5731 3.5576 40 1 10.8953 -2.1725 4.9950 41 1 2.2490 -1.6317 -1.1528 42 1 2.7860 -1.7811 -3.5414 43 1 2.1178 1.9009 -5.1968 44 1 2.9272 1.8404 -3.6089 45 1 5.1194 1.5876 -4.6889 46 1 4.3028 3.0150 -5.3706 47 1 5.2807 1.6806 -7.1848 48 1 3.5059 1.6071 -7.2783 49 1 5.2724 -0.4983 -5.9533 50 1 4.5707 -0.6356 -7.5835 51 1 3.2039 -1.8017 -5.8145 52 1 2.3014 -0.5177 -6.6614 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482815621.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:03:47 Heat of formation + Delta-G solvation = -80.953396 kcal Electronic energy + Delta-G solvation = -28436.610668 eV Core-core repulsion = 24435.168147 eV Total energy + Delta-G solvation = -4001.442521 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.32982 -38.54873 -38.24113 -36.84240 -34.98022 -33.82044 -33.06916 -31.71736 -31.28312 -31.19751 -29.26146 -27.14895 -26.20396 -24.14564 -23.30649 -22.77217 -21.98086 -20.99412 -20.63737 -19.26576 -18.83156 -17.87975 -17.22877 -16.44112 -16.14866 -15.70524 -15.49384 -15.01918 -14.79471 -14.69052 -14.54556 -14.32381 -13.91523 -13.85566 -13.82854 -13.62892 -13.44867 -13.15151 -12.96224 -12.72193 -12.62636 -12.28538 -12.25110 -12.10025 -11.65378 -11.50261 -11.44167 -11.28178 -11.24174 -11.18977 -11.02213 -10.98562 -10.88093 -10.63838 -10.44203 -10.21129 -9.66935 -9.49890 -9.24217 -9.08307 -8.46375 -8.06017 -7.95735 -6.41373 -3.82348 1.10748 3.05486 3.10923 3.20247 3.25851 3.30281 3.91039 4.05255 4.25836 4.32334 4.36174 4.56182 4.63953 4.77834 4.84665 4.85841 4.94703 4.99598 5.05245 5.06663 5.14229 5.23263 5.24801 5.29342 5.33164 5.38950 5.49608 5.53731 5.58314 5.61265 5.64316 5.69546 5.72688 5.74959 5.81253 5.91901 5.95697 5.96208 6.01104 6.02277 6.09761 6.24600 6.27502 6.35593 6.50274 7.21420 7.39004 7.55155 7.66416 8.06332 8.11918 8.61551 9.17901 9.54538 10.06058 10.76293 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.012228 B = 0.001859 C = 0.001667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2289.357970 B =15058.978440 C =16789.451754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.143 3.857 3 H 0.088 0.912 4 C -0.125 4.125 5 C 0.059 3.941 6 N -0.669 5.669 7 C 0.051 3.949 8 C 0.441 3.559 9 O -0.584 6.584 10 N -0.564 5.564 11 C -0.300 4.300 12 H 0.103 0.897 13 C 0.022 3.978 14 N -0.902 5.902 15 Si 0.931 3.069 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.274 1.274 19 N -0.720 5.720 20 C 0.550 3.450 21 O -0.542 6.542 22 C -0.236 4.236 23 C -0.017 4.017 24 C -0.121 4.121 25 C -0.118 4.118 26 C -0.124 4.124 27 C -0.118 4.118 28 C -0.094 4.094 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.070 0.930 35 H 0.026 0.974 36 H 0.349 0.651 37 H 0.085 0.915 38 H 0.043 0.957 39 H 0.392 0.608 40 H 0.272 0.728 41 H 0.402 0.598 42 H 0.126 0.874 43 H 0.074 0.926 44 H 0.122 0.878 45 H 0.062 0.938 46 H 0.066 0.934 47 H 0.062 0.938 48 H 0.062 0.938 49 H 0.066 0.934 50 H 0.066 0.934 51 H 0.074 0.926 52 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.218 6.281 -23.326 28.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.038 3.962 3 H 0.106 0.894 4 C -0.164 4.164 5 C -0.070 4.070 6 N -0.302 5.302 7 C -0.082 4.082 8 C 0.226 3.774 9 O -0.468 6.468 10 N -0.200 5.200 11 C -0.429 4.429 12 H 0.120 0.880 13 C -0.180 4.180 14 N -0.543 5.543 15 Si 0.758 3.242 16 H -0.199 1.199 17 H -0.210 1.210 18 H -0.199 1.199 19 N -0.370 5.370 20 C 0.340 3.660 21 O -0.423 6.423 22 C -0.257 4.257 23 C -0.019 4.019 24 C -0.158 4.158 25 C -0.156 4.156 26 C -0.161 4.161 27 C -0.156 4.156 28 C -0.131 4.131 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.097 0.903 33 H 0.098 0.902 34 H 0.088 0.912 35 H 0.044 0.956 36 H 0.168 0.832 37 H 0.103 0.897 38 H 0.061 0.939 39 H 0.225 0.775 40 H 0.082 0.918 41 H 0.237 0.763 42 H 0.144 0.856 43 H 0.093 0.907 44 H 0.139 0.861 45 H 0.081 0.919 46 H 0.084 0.916 47 H 0.081 0.919 48 H 0.081 0.919 49 H 0.084 0.916 50 H 0.085 0.915 51 H 0.093 0.907 52 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -14.736 6.144 -23.108 28.087 hybrid contribution 1.103 0.118 0.606 1.264 sum -13.634 6.262 -22.502 27.045 Atomic orbital electron populations 1.22155 0.95161 1.02200 1.02467 1.20959 0.93960 0.97513 0.83724 0.89435 1.21875 0.95625 1.01988 0.96874 1.21958 0.94524 0.96128 0.94417 1.60099 1.04919 1.59891 1.05272 1.21661 0.88947 0.98740 0.98846 1.19818 0.83406 0.86136 0.88042 1.90519 1.53409 1.50477 1.52395 1.41861 1.05441 1.48873 1.23855 1.19658 0.91978 1.30298 1.01016 0.87965 1.25270 0.95628 0.97820 0.99268 1.69607 1.02567 1.44196 1.37976 0.85908 0.77231 0.79802 0.81217 1.19873 1.20984 1.19922 1.46071 1.67198 1.14240 1.09536 1.18564 0.77632 0.86420 0.83375 1.90608 1.51011 1.15784 1.84872 1.22313 1.09435 1.00355 0.93585 1.22727 0.88847 0.96701 0.93659 1.21691 0.97147 0.91077 1.05844 1.21686 0.97712 1.00354 0.95810 1.21571 1.01902 0.95225 0.97432 1.21580 0.97121 0.95964 1.00888 1.20984 0.98686 0.99523 0.93933 0.92386 0.92189 0.91569 0.90251 0.90225 0.91171 0.95576 0.83223 0.89706 0.93939 0.77455 0.91817 0.76344 0.85574 0.90736 0.86071 0.91909 0.91562 0.91918 0.91923 0.91570 0.91529 0.90736 0.89805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.39 9.48 37.16 0.35 -1.04 16 2 C 0.14 1.34 2.57 -67.93 -0.17 1.17 16 3 H 0.09 0.96 7.58 -51.92 -0.39 0.57 16 4 C -0.13 -1.22 5.01 -26.73 -0.13 -1.35 16 5 C 0.06 0.72 5.57 -3.83 -0.02 0.70 16 6 N -0.67 -10.72 6.13 -115.06 -0.70 -11.42 16 7 C 0.05 0.91 6.17 -4.98 -0.03 0.88 16 8 C 0.44 10.51 7.82 -10.99 -0.09 10.42 16 9 O -0.58 -15.95 15.78 5.54 0.09 -15.86 16 10 N -0.56 -14.43 5.29 -10.96 -0.06 -14.49 16 11 C -0.30 -8.43 9.68 -14.93 -0.14 -8.57 16 12 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 13 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 14 N -0.90 -24.67 13.05 55.50 0.72 -23.95 16 15 Si 0.93 21.13 29.55 -169.99 -5.02 16.11 16 16 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 17 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 18 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 19 N -0.72 -6.45 4.53 -54.99 -0.25 -6.70 16 20 C 0.55 5.83 7.58 -12.66 -0.10 5.74 16 21 O -0.54 -7.24 12.88 5.27 0.07 -7.17 16 22 C -0.24 -2.04 9.65 -37.80 -0.37 -2.41 16 23 C -0.02 -0.15 5.38 -100.61 -0.54 -0.69 16 24 C -0.12 -1.12 5.32 -27.26 -0.14 -1.26 16 25 C -0.12 -0.91 5.95 -26.40 -0.16 -1.07 16 26 C -0.12 -0.78 5.81 -26.77 -0.16 -0.94 16 27 C -0.12 -0.70 5.94 -26.63 -0.16 -0.86 16 28 C -0.09 -0.58 6.04 -27.49 -0.17 -0.75 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.07 0.83 7.75 -51.93 -0.40 0.43 16 35 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.35 5.75 8.43 -39.29 -0.33 5.42 16 37 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 38 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.39 9.60 7.90 -40.82 -0.32 9.28 16 40 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 41 H 0.40 2.93 8.59 -40.82 -0.35 2.58 16 42 H 0.13 0.83 7.96 -52.48 -0.42 0.41 16 43 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.12 1.42 4.79 -52.87 -0.25 1.16 16 45 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 48 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 49 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 50 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 51 H 0.07 0.40 7.92 -51.93 -0.41 -0.02 16 52 H 0.08 0.46 8.14 -51.92 -0.42 0.04 16 LS Contribution 418.65 15.07 6.31 6.31 Total: -1.00 -32.47 418.65 -10.12 -42.59 By element: Atomic # 1 Polarization: 23.29 SS G_CDS: -9.16 Total: 14.13 kcal Atomic # 6 Polarization: 2.57 SS G_CDS: -2.12 Total: 0.45 kcal Atomic # 7 Polarization: -56.27 SS G_CDS: -0.29 Total: -56.55 kcal Atomic # 8 Polarization: -23.19 SS G_CDS: 0.16 Total: -23.04 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -32.47 -10.12 -42.59 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482815621.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.360 kcal (2) G-P(sol) polarization free energy of solvation -32.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds