Wall clock time and date at job start Tue Mar 31 2020 20:03:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47410 * 2 1 4 4 C 1.53004 * 109.47525 * 119.99734 * 2 1 3 5 5 C 1.52993 * 109.47360 * 184.99971 * 4 2 1 6 6 N 1.46905 * 109.47039 * 180.02562 * 5 4 2 7 7 C 1.46901 * 110.99870 * 180.02562 * 6 5 4 8 8 C 1.50697 * 109.46943 * 180.02562 * 7 6 5 9 9 O 1.21292 * 120.00024 * 359.97438 * 8 7 6 10 10 N 1.34776 * 119.99767 * 180.02562 * 8 7 6 11 11 C 1.37102 * 120.00095 * 179.97438 * 10 8 7 12 12 H 1.08004 * 119.99386 * 359.97438 * 11 10 8 13 13 C 1.38941 * 120.00393 * 179.97438 * 11 10 8 14 14 N 1.31408 * 120.00397 * 179.97438 * 13 11 10 15 15 Si 1.86798 * 120.00009 * 359.97438 * 13 11 10 16 16 H 1.48500 * 109.47309 * 89.99758 * 15 13 11 17 17 H 1.48496 * 109.47518 * 209.99884 * 15 13 11 18 18 H 1.48503 * 109.47255 * 329.99853 * 15 13 11 19 19 N 1.46500 * 109.47120 * 239.99886 * 2 1 3 20 20 C 1.34779 * 120.00042 * 85.00050 * 19 2 1 21 21 O 1.21276 * 119.99621 * 359.97438 * 20 19 2 22 22 C 1.50700 * 120.00130 * 179.97438 * 20 19 2 23 23 C 1.50695 * 109.47283 * 179.97438 * 22 20 19 24 24 C 1.29445 * 117.96205 * 94.73458 * 23 22 20 25 25 C 1.50065 * 124.07535 * 180.23791 * 24 23 22 26 26 C 1.53018 * 110.20212 * 343.31781 * 25 24 23 27 27 C 1.53398 * 108.43648 * 49.25043 * 26 25 24 28 28 C 1.50070 * 117.96186 * 275.00152 * 23 22 20 29 29 H 1.09000 * 109.46886 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47161 * 299.99783 * 1 2 3 31 31 H 1.08995 * 109.47284 * 60.00507 * 1 2 3 32 32 H 1.09001 * 109.46514 * 64.99866 * 4 2 1 33 33 H 1.08998 * 109.46924 * 305.00346 * 4 2 1 34 34 H 1.09001 * 109.47393 * 60.00433 * 5 4 2 35 35 H 1.08998 * 109.47408 * 300.00078 * 5 4 2 36 36 H 1.00901 * 110.99869 * 56.04956 * 6 5 4 37 37 H 1.09004 * 109.47031 * 299.99620 * 7 6 5 38 38 H 1.08995 * 109.47111 * 59.99900 * 7 6 5 39 39 H 0.96997 * 120.00713 * 359.97438 * 10 8 7 40 40 H 0.97001 * 120.00755 * 180.02562 * 14 13 11 41 41 H 0.96995 * 120.00031 * 264.99706 * 19 2 1 42 42 H 1.09003 * 109.47200 * 300.00282 * 22 20 19 43 43 H 1.09000 * 109.47091 * 59.99943 * 22 20 19 44 44 H 1.08001 * 117.96270 * 0.46919 * 24 23 22 45 45 H 1.09005 * 109.48235 * 222.99463 * 25 24 23 46 46 H 1.09002 * 109.17708 * 103.44939 * 25 24 23 47 47 H 1.08997 * 109.64555 * 289.56190 * 26 25 24 48 48 H 1.09007 * 109.81766 * 169.03382 * 26 25 24 49 49 H 1.09006 * 109.64283 * 172.87939 * 27 26 25 50 50 H 1.09001 * 109.64144 * 52.25001 * 27 26 25 51 51 H 1.08992 * 109.35681 * 283.05143 * 28 23 22 52 52 H 1.08996 * 109.35854 * 42.77961 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 3.5648 -0.6132 1.3137 6 7 4.0546 -1.3062 2.5128 7 6 5.5181 -1.2226 2.6083 8 6 5.9826 -1.9435 3.8475 9 8 5.1740 -2.4743 4.5794 10 7 7.2964 -1.9976 4.1430 11 6 7.7191 -2.6530 5.2706 12 1 6.9990 -3.1256 5.9223 13 6 9.0736 -2.7092 5.5750 14 7 9.4786 -3.3370 6.6561 15 14 10.3190 -1.8925 4.4475 16 1 10.5336 -0.4886 4.8814 17 1 11.6048 -2.6324 4.5116 18 1 9.8085 -1.9070 3.0531 19 7 2.0183 -0.6906 -1.1962 20 6 2.1470 -0.0183 -2.3572 21 8 1.8581 1.1583 -2.4117 22 6 2.6499 -0.7286 -3.5875 23 6 2.6999 0.2395 -4.7413 24 6 3.8223 0.8369 -4.9841 25 6 4.0245 1.8282 -6.0924 26 6 2.8890 1.7196 -7.1123 27 6 1.5543 1.7409 -6.3565 28 6 1.4437 0.4557 -5.5334 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 1.7517 -1.7715 1.2056 33 1 1.6054 -0.2617 2.1370 34 1 3.8532 0.4370 1.3574 35 1 3.9995 -1.0727 0.4260 36 1 3.7452 -2.2665 2.5272 37 1 5.9666 -1.6858 1.7294 38 1 5.8196 -0.1765 2.6615 39 1 7.9431 -1.5729 3.5580 40 1 10.4242 -3.3759 6.8689 41 1 2.2490 -1.6317 -1.1526 42 1 3.6492 -1.1204 -3.3979 43 1 1.9777 -1.5509 -3.8325 44 1 4.6667 0.6046 -4.3521 45 1 4.9753 1.6309 -6.5877 46 1 4.0395 2.8347 -5.6741 47 1 2.9818 0.7852 -7.6658 48 1 2.9318 2.5610 -7.8041 49 1 0.7307 1.7919 -7.0687 50 1 1.5229 2.6050 -5.6929 51 1 1.2889 -0.3901 -6.2031 52 1 0.5966 0.5371 -4.8523 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482816649.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:03:52 Heat of formation + Delta-G solvation = -106.172279 kcal Electronic energy + Delta-G solvation = -28430.847890 eV Core-core repulsion = 24428.311796 eV Total energy + Delta-G solvation = -4002.536094 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.06482 -40.31160 -39.28956 -37.86798 -36.29085 -35.72015 -33.93646 -33.75651 -32.51541 -31.61928 -30.41146 -28.20270 -27.88322 -25.61663 -24.20120 -23.49686 -22.85184 -21.91456 -21.36986 -21.27117 -20.26322 -18.48262 -18.02522 -17.81773 -17.45522 -17.02810 -16.68760 -16.49153 -16.09132 -15.77110 -15.41310 -15.38171 -15.05023 -14.98091 -14.74663 -14.54015 -14.46670 -14.35260 -14.01590 -13.84398 -13.64883 -13.43598 -13.31884 -13.11000 -13.02703 -12.91688 -12.79951 -12.56142 -12.42154 -12.25318 -12.06323 -11.97390 -11.78798 -11.66476 -11.52357 -11.33507 -11.10258 -10.86667 -10.46071 -10.25715 -10.05388 -9.64356 -9.32392 -8.41971 -6.03064 1.27671 1.29525 1.35317 1.43933 1.72216 1.94193 2.22313 2.39042 2.69813 3.14180 3.36376 3.66826 3.80828 3.86933 3.99362 4.05395 4.09509 4.16280 4.21439 4.29020 4.36227 4.41460 4.43626 4.47914 4.50526 4.57060 4.62065 4.68269 4.70087 4.73502 4.76871 4.82492 4.95578 4.99950 5.03184 5.09146 5.11666 5.18890 5.19617 5.31368 5.32433 5.46452 5.51844 5.60552 5.76201 5.89675 6.03713 6.11568 6.41071 6.58835 6.63138 6.87042 7.34411 7.38694 7.94957 8.75557 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013526 B = 0.001869 C = 0.001675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.574719 B =14975.282789 C =16715.089420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.150 3.850 3 H 0.068 0.932 4 C -0.115 4.115 5 C 0.065 3.935 6 N -0.687 5.687 7 C 0.062 3.938 8 C 0.448 3.552 9 O -0.614 6.614 10 N -0.591 5.591 11 C -0.330 4.330 12 H 0.056 0.944 13 C -0.015 4.015 14 N -0.933 5.933 15 Si 0.965 3.035 16 H -0.259 1.259 17 H -0.274 1.274 18 H -0.231 1.231 19 N -0.717 5.717 20 C 0.513 3.487 21 O -0.577 6.577 22 C -0.108 4.108 23 C -0.112 4.112 24 C -0.158 4.158 25 C -0.092 4.092 26 C -0.117 4.117 27 C -0.120 4.120 28 C -0.079 4.079 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.043 0.957 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.067 0.933 35 H 0.044 0.956 36 H 0.347 0.653 37 H 0.077 0.923 38 H 0.108 0.892 39 H 0.389 0.611 40 H 0.279 0.721 41 H 0.413 0.587 42 H 0.115 0.885 43 H 0.121 0.879 44 H 0.101 0.899 45 H 0.081 0.919 46 H 0.064 0.936 47 H 0.070 0.930 48 H 0.072 0.928 49 H 0.075 0.925 50 H 0.046 0.954 51 H 0.086 0.914 52 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.054 8.175 -31.816 35.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.044 3.956 3 H 0.086 0.914 4 C -0.153 4.153 5 C -0.064 4.064 6 N -0.320 5.320 7 C -0.070 4.070 8 C 0.236 3.764 9 O -0.498 6.498 10 N -0.233 5.233 11 C -0.459 4.459 12 H 0.074 0.926 13 C -0.214 4.214 14 N -0.574 5.574 15 Si 0.785 3.215 16 H -0.183 1.183 17 H -0.199 1.199 18 H -0.154 1.154 19 N -0.370 5.370 20 C 0.301 3.699 21 O -0.457 6.457 22 C -0.147 4.147 23 C -0.113 4.113 24 C -0.176 4.176 25 C -0.128 4.128 26 C -0.154 4.154 27 C -0.157 4.157 28 C -0.116 4.116 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.062 0.938 32 H 0.100 0.900 33 H 0.101 0.899 34 H 0.085 0.915 35 H 0.062 0.938 36 H 0.166 0.834 37 H 0.095 0.905 38 H 0.126 0.874 39 H 0.225 0.775 40 H 0.089 0.911 41 H 0.249 0.751 42 H 0.133 0.867 43 H 0.139 0.861 44 H 0.119 0.881 45 H 0.099 0.901 46 H 0.082 0.918 47 H 0.089 0.911 48 H 0.091 0.909 49 H 0.093 0.907 50 H 0.065 0.935 51 H 0.104 0.896 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -14.749 9.117 -30.790 35.337 hybrid contribution 1.311 -0.769 -0.150 1.527 sum -13.438 8.348 -30.940 34.750 Atomic orbital electron populations 1.22091 0.94569 1.02755 1.02042 1.20803 0.94342 0.96635 0.83786 0.91410 1.21767 0.94366 1.02049 0.97099 1.21992 0.95502 0.99066 0.89850 1.60028 1.08642 1.22000 1.41354 1.21610 0.89947 1.01570 0.93885 1.20988 0.81930 0.84139 0.89357 1.90542 1.54160 1.51106 1.53987 1.42040 1.07057 1.50773 1.23388 1.19015 0.93203 1.32153 1.01542 0.92626 1.26113 0.99106 0.97591 0.98542 1.69799 1.17312 1.43275 1.27003 0.85368 0.77709 0.78921 0.79542 1.18310 1.19938 1.15409 1.46109 1.67081 1.14637 1.09128 1.21060 0.76735 0.86964 0.85177 1.90699 1.51420 1.17945 1.85599 1.20917 1.04932 0.98660 0.90217 1.20478 0.95571 0.98693 0.96538 1.22058 0.97716 0.98434 0.99440 1.20449 0.99623 0.97835 0.94933 1.21593 0.93923 1.02625 0.97308 1.21581 0.98273 0.97250 0.98643 1.20348 0.94905 0.98582 0.97747 0.91206 0.90988 0.93757 0.89953 0.89880 0.91488 0.93798 0.83415 0.90509 0.87357 0.77499 0.91122 0.75059 0.86735 0.86120 0.88118 0.90084 0.91774 0.91133 0.90922 0.90671 0.93518 0.89610 0.92357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.33 9.48 71.98 0.68 -1.65 16 2 C 0.15 2.36 2.57 44.99 0.12 2.48 16 3 H 0.07 1.40 7.58 -2.39 -0.02 1.38 16 4 C -0.11 -1.81 5.01 30.59 0.15 -1.66 16 5 C 0.06 1.24 5.57 86.30 0.48 1.72 16 6 N -0.69 -19.03 6.13 -517.93 -3.17 -22.20 16 7 C 0.06 1.86 6.17 85.56 0.53 2.39 16 8 C 0.45 20.03 7.82 87.66 0.69 20.72 16 9 O -0.61 -33.75 15.78 -3.07 -0.05 -33.79 16 10 N -0.59 -27.73 5.09 -306.99 -1.56 -29.29 16 11 C -0.33 -19.31 10.16 84.04 0.85 -18.46 16 12 H 0.06 3.88 7.39 -2.91 -0.02 3.86 16 13 C -0.01 -0.82 5.50 84.92 0.47 -0.35 16 14 N -0.93 -56.14 13.96 21.66 0.30 -55.84 16 15 Si 0.96 38.57 27.73 68.60 1.90 40.47 16 16 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 17 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 18 H -0.23 -7.71 6.52 99.48 0.65 -7.06 16 19 N -0.72 -9.41 4.53 -442.54 -2.00 -11.41 16 20 C 0.51 8.88 7.79 87.66 0.68 9.56 16 21 O -0.58 -15.28 15.70 -3.02 -0.05 -15.32 16 22 C -0.11 -1.22 5.71 29.10 0.17 -1.06 16 23 C -0.11 -1.68 4.33 -15.10 -0.07 -1.75 16 24 C -0.16 -2.45 9.37 27.04 0.25 -2.20 16 25 C -0.09 -1.22 6.11 29.66 0.18 -1.04 16 26 C -0.12 -1.34 6.01 30.73 0.18 -1.16 16 27 C -0.12 -1.62 6.01 30.74 0.18 -1.44 16 28 C -0.08 -1.09 5.80 29.66 0.17 -0.92 16 29 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 31 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.04 0.71 7.75 -2.39 -0.02 0.69 16 36 H 0.35 9.94 8.43 -89.69 -0.76 9.18 16 37 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.11 2.83 8.14 -2.39 -0.02 2.81 16 39 H 0.39 15.09 5.76 -92.71 -0.53 14.56 16 40 H 0.28 15.33 8.31 -92.71 -0.77 14.56 16 41 H 0.41 3.23 8.60 -92.71 -0.80 2.43 16 42 H 0.11 0.92 7.80 -2.39 -0.02 0.90 16 43 H 0.12 0.80 8.11 -2.39 -0.02 0.78 16 44 H 0.10 1.49 7.74 -2.91 -0.02 1.47 16 45 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 46 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 47 H 0.07 0.71 8.12 -2.39 -0.02 0.69 16 48 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 49 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 50 H 0.05 0.81 8.12 -2.39 -0.02 0.79 16 51 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 52 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -80.94 420.78 -0.13 -81.07 By element: Atomic # 1 Polarization: 42.35 SS G_CDS: -1.23 Total: 41.12 kcal Atomic # 6 Polarization: -0.53 SS G_CDS: 5.73 Total: 5.20 kcal Atomic # 7 Polarization: -112.31 SS G_CDS: -6.44 Total: -118.75 kcal Atomic # 8 Polarization: -49.02 SS G_CDS: -0.10 Total: -49.12 kcal Atomic # 14 Polarization: 38.57 SS G_CDS: 1.90 Total: 40.47 kcal Total: -80.94 -0.13 -81.07 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482816649.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.100 kcal (2) G-P(sol) polarization free energy of solvation -80.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds