Wall clock time and date at job start Tue Mar 31 2020 20:05:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.46958 * 2 1 4 4 C 1.53002 * 109.47101 * 240.00650 * 2 1 3 5 5 C 1.52992 * 109.47374 * 175.00038 * 4 2 1 6 6 N 1.46501 * 109.47391 * 179.97438 * 5 4 2 7 7 C 1.36939 * 120.00002 * 179.97438 * 6 5 4 8 8 H 1.07999 * 120.00312 * 359.97438 * 7 6 5 9 9 C 1.38814 * 119.99513 * 180.02562 * 7 6 5 10 10 N 1.31613 * 120.00570 * 0.02562 * 9 7 6 11 11 Si 1.86807 * 119.99448 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47042 * 89.99953 * 11 9 7 13 13 H 1.48504 * 109.46591 * 209.99879 * 11 9 7 14 14 H 1.48496 * 109.47253 * 329.99688 * 11 9 7 15 15 N 1.46497 * 109.47357 * 120.00690 * 2 1 3 16 16 C 1.34780 * 119.99566 * 275.00168 * 15 2 1 17 17 O 1.21280 * 120.00423 * 359.97438 * 16 15 2 18 18 C 1.50701 * 119.99795 * 180.02562 * 16 15 2 19 19 C 1.52997 * 109.47212 * 179.97438 * 18 16 15 20 20 C 1.50697 * 109.47466 * 179.97438 * 19 18 16 21 21 N 1.30254 * 125.61758 * 90.02429 * 20 19 18 22 22 C 1.34482 * 108.70099 * 179.97438 * 21 20 19 23 23 C 1.34332 * 107.66598 * 359.97438 * 22 21 20 24 24 C 1.50705 * 126.43817 * 180.02562 * 23 22 21 25 25 C 1.52996 * 109.46937 * 60.00302 * 24 23 22 26 26 C 1.52998 * 109.46422 * 180.02562 * 24 23 22 27 27 C 1.52997 * 109.47214 * 299.99976 * 24 23 22 28 28 O 1.33963 * 125.62102 * 269.71993 * 20 19 18 29 29 H 1.09000 * 109.46920 * 299.99358 * 1 2 3 30 30 H 1.09004 * 109.47178 * 59.99589 * 1 2 3 31 31 H 1.08993 * 109.47354 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46596 * 295.00070 * 4 2 1 33 33 H 1.09000 * 109.47314 * 54.99345 * 4 2 1 34 34 H 1.09002 * 109.47285 * 299.99610 * 5 4 2 35 35 H 1.09000 * 109.47465 * 59.99400 * 5 4 2 36 36 H 0.96998 * 119.99873 * 0.02562 * 6 5 4 37 37 H 0.97001 * 120.00070 * 180.02562 * 10 9 7 38 38 H 0.96995 * 120.00423 * 94.99474 * 15 2 1 39 39 H 1.09002 * 109.47060 * 299.99722 * 18 16 15 40 40 H 1.09001 * 109.47380 * 59.99809 * 18 16 15 41 41 H 1.09002 * 109.47153 * 299.99998 * 19 18 16 42 42 H 1.08998 * 109.47533 * 59.99628 * 19 18 16 43 43 H 1.07999 * 126.16321 * 180.02562 * 22 21 20 44 44 H 1.08994 * 109.47722 * 59.99977 * 25 24 23 45 45 H 1.09004 * 109.46972 * 179.97438 * 25 24 23 46 46 H 1.09001 * 109.47186 * 299.98960 * 25 24 23 47 47 H 1.08996 * 109.47523 * 59.99986 * 26 24 23 48 48 H 1.09004 * 109.46527 * 180.02562 * 26 24 23 49 49 H 1.09004 * 109.47442 * 299.99371 * 26 24 23 50 50 H 1.08999 * 109.46952 * 59.99963 * 27 24 23 51 51 H 1.08997 * 109.47217 * 180.02562 * 27 24 23 52 52 H 1.09005 * 109.46898 * 300.00356 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5647 -0.6132 -1.3138 6 7 4.0531 -1.3042 -2.5098 7 6 5.3952 -1.3402 -2.7797 8 1 6.0936 -0.8588 -2.1112 9 6 5.8578 -1.9945 -3.9132 10 7 5.0066 -2.5798 -4.7287 11 14 7.6886 -2.0442 -4.2810 12 1 8.2887 -3.2450 -3.6459 13 1 7.8968 -2.1048 -5.7501 14 1 8.3357 -0.8222 -3.7394 15 7 2.0184 -0.6907 1.1960 16 6 2.1471 -0.0184 2.3571 17 8 1.8590 1.1584 2.4116 18 6 2.6500 -0.7288 3.5873 19 6 2.7019 0.2543 4.7585 20 6 3.2042 -0.4561 5.9889 21 7 4.4516 -0.5579 6.3500 22 6 4.5129 -1.2585 7.4962 23 6 3.2571 -1.5905 7.8387 24 6 2.8393 -2.3788 9.0533 25 6 3.2860 -1.6422 10.3177 26 6 1.3170 -2.5321 9.0627 27 6 3.4905 -3.7626 9.0121 28 8 2.4411 -1.0821 6.8946 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.7516 -1.7714 -1.2057 33 1 1.6053 -0.2616 -2.1370 34 1 3.8532 0.4371 -1.3574 35 1 3.9994 -1.0727 -0.4261 36 1 3.4258 -1.7356 -3.1108 37 1 5.3300 -3.0374 -5.5205 38 1 2.2490 -1.6318 1.1524 39 1 1.9778 -1.5511 3.8324 40 1 3.6493 -1.1205 3.3977 41 1 3.3743 1.0764 4.5133 42 1 1.7028 0.6465 4.9483 43 1 5.4100 -1.5084 8.0432 44 1 2.8220 -0.6564 10.3471 45 1 2.9834 -2.2122 11.1963 46 1 4.3705 -1.5334 10.3108 47 1 0.9991 -3.0570 8.1619 48 1 1.0147 -3.1019 9.9414 49 1 0.8526 -1.5464 9.0919 50 1 4.5750 -3.6537 9.0051 51 1 3.1880 -4.3329 9.8904 52 1 3.1723 -4.2873 8.1112 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482841404.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:05:12 Heat of formation + Delta-G solvation = -35.255140 kcal Electronic energy + Delta-G solvation = -28518.505630 eV Core-core repulsion = 24519.044734 eV Total energy + Delta-G solvation = -3999.460896 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.64032 -39.89942 -37.56171 -36.65562 -35.04983 -34.36686 -33.85810 -31.93786 -30.70866 -29.10945 -27.87938 -27.84715 -27.83301 -25.53837 -23.95182 -23.05381 -21.94266 -21.41441 -20.68708 -20.34796 -20.02964 -17.69661 -17.17194 -16.91022 -16.72117 -16.09907 -15.86591 -15.34637 -14.78331 -14.67753 -14.56162 -14.21167 -13.96599 -13.80397 -13.73275 -13.38662 -13.26398 -13.24306 -12.90121 -12.81773 -12.74291 -12.51994 -12.33576 -12.23039 -12.07148 -11.85169 -11.59707 -11.51143 -11.46589 -11.41481 -11.20792 -11.02073 -10.79033 -10.66030 -10.64651 -10.55893 -10.04208 -9.87472 -9.69662 -9.02148 -8.92484 -8.85623 -6.92380 -5.76654 -3.05353 1.16515 2.29162 2.43369 2.62659 3.18884 3.44138 3.49437 3.51285 3.78470 4.12008 4.30997 4.35295 4.52414 4.57863 4.60426 4.74853 4.79940 4.89798 5.00273 5.05528 5.06376 5.20044 5.21686 5.27230 5.27421 5.32245 5.34916 5.36072 5.48232 5.52244 5.55352 5.56885 5.67228 5.71861 5.71968 5.75460 5.77330 5.85164 5.93453 6.03015 6.06959 6.23522 6.27824 6.33848 6.54461 6.81577 6.86704 7.51409 7.52990 7.70783 8.22106 8.42396 9.53528 10.11169 10.45769 11.46205 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.012085 B = 0.001925 C = 0.001748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2316.419407 B =14543.700791 C =16016.091458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.144 3.856 3 H 0.089 0.911 4 C -0.135 4.135 5 C 0.154 3.846 6 N -0.734 5.734 7 C -0.239 4.239 8 H 0.070 0.930 9 C -0.015 4.015 10 N -0.934 5.934 11 Si 0.907 3.093 12 H -0.290 1.290 13 H -0.291 1.291 14 H -0.282 1.282 15 N -0.717 5.717 16 C 0.518 3.482 17 O -0.545 6.545 18 C -0.140 4.140 19 C -0.005 4.005 20 C 0.191 3.809 21 N -0.476 5.476 22 C -0.038 4.038 23 C -0.037 4.037 24 C 0.019 3.981 25 C -0.140 4.140 26 C -0.145 4.145 27 C -0.141 4.141 28 O -0.196 6.196 29 H 0.057 0.943 30 H 0.066 0.934 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.079 0.921 34 H 0.018 0.982 35 H 0.019 0.981 36 H 0.383 0.617 37 H 0.255 0.745 38 H 0.403 0.597 39 H 0.097 0.903 40 H 0.104 0.896 41 H 0.115 0.885 42 H 0.100 0.900 43 H 0.180 0.820 44 H 0.060 0.940 45 H 0.070 0.930 46 H 0.063 0.937 47 H 0.061 0.939 48 H 0.065 0.935 49 H 0.060 0.940 50 H 0.063 0.937 51 H 0.070 0.930 52 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.167 -0.527 30.210 31.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.040 3.960 3 H 0.107 0.893 4 C -0.173 4.173 5 C 0.026 3.974 6 N -0.378 5.378 7 C -0.370 4.370 8 H 0.088 0.912 9 C -0.211 4.211 10 N -0.583 5.583 11 Si 0.738 3.262 12 H -0.217 1.217 13 H -0.217 1.217 14 H -0.207 1.207 15 N -0.369 5.369 16 C 0.304 3.696 17 O -0.423 6.423 18 C -0.181 4.181 19 C -0.044 4.044 20 C -0.016 4.016 21 N -0.205 5.205 22 C -0.177 4.177 23 C -0.091 4.091 24 C 0.018 3.982 25 C -0.198 4.198 26 C -0.202 4.202 27 C -0.198 4.198 28 O -0.083 6.083 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.098 0.902 34 H 0.036 0.964 35 H 0.036 0.964 36 H 0.217 0.783 37 H 0.065 0.935 38 H 0.237 0.763 39 H 0.115 0.885 40 H 0.123 0.877 41 H 0.133 0.867 42 H 0.118 0.882 43 H 0.197 0.803 44 H 0.079 0.921 45 H 0.088 0.912 46 H 0.082 0.918 47 H 0.080 0.920 48 H 0.084 0.916 49 H 0.079 0.921 50 H 0.082 0.918 51 H 0.088 0.912 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -9.741 0.619 29.892 31.445 hybrid contribution 0.541 -1.061 -0.148 1.200 sum -9.200 -0.441 29.744 31.138 Atomic orbital electron populations 1.22158 0.95459 1.01968 1.02305 1.20993 0.93533 0.97754 0.83755 0.89284 1.22066 0.98071 1.00776 0.96407 1.20636 0.90355 0.95647 0.90753 1.42367 1.05374 1.64947 1.25134 1.19238 0.83852 1.28436 1.05501 0.91216 1.24747 0.97738 1.00944 0.97654 1.69656 1.32765 1.40732 1.15128 0.86184 0.85103 0.77707 0.77189 1.21715 1.21749 1.20733 1.46119 1.66808 1.14320 1.09620 1.20332 0.77476 0.87241 0.84512 1.90705 1.50508 1.15861 1.85181 1.21643 1.04528 0.99344 0.92548 1.19791 1.03982 0.96296 0.84301 1.26269 0.84534 0.97070 0.93711 1.70492 1.19471 1.17782 1.12719 1.22992 0.97612 1.01700 0.95397 1.23367 0.89534 1.02639 0.93514 1.19126 0.97139 0.93687 0.88252 1.21936 1.01929 1.00486 0.95409 1.21874 0.93062 1.02641 1.02625 1.21940 1.00956 0.94086 1.02816 1.84388 1.39541 1.54606 1.29742 0.92417 0.91532 0.92562 0.91385 0.90249 0.96404 0.96364 0.78336 0.93536 0.76278 0.88489 0.87730 0.86664 0.88181 0.80310 0.92110 0.91153 0.91836 0.91979 0.91567 0.92057 0.91817 0.91150 0.92002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.82 9.48 37.16 0.35 -1.46 16 2 C 0.14 1.89 2.57 -67.93 -0.17 1.72 16 3 H 0.09 1.33 7.58 -51.93 -0.39 0.94 16 4 C -0.13 -2.04 4.87 -26.73 -0.13 -2.17 16 5 C 0.15 3.06 6.15 -4.05 -0.02 3.03 16 6 N -0.73 -18.64 5.60 -59.91 -0.34 -18.98 16 7 C -0.24 -6.78 9.99 -15.06 -0.15 -6.94 16 8 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 9 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 10 N -0.93 -28.35 13.06 55.49 0.72 -27.62 16 11 Si 0.91 22.65 29.55 -169.99 -5.02 17.62 16 12 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 13 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 14 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 15 N -0.72 -8.47 4.53 -53.80 -0.24 -8.71 16 16 C 0.52 6.34 7.79 -10.98 -0.09 6.25 16 17 O -0.54 -8.40 15.64 5.56 0.09 -8.31 16 18 C -0.14 -1.31 5.68 -27.88 -0.16 -1.47 16 19 C -0.01 -0.05 5.13 -27.89 -0.14 -0.20 16 20 C 0.19 2.13 7.60 -12.95 -0.10 2.03 16 21 N -0.48 -5.91 11.29 -11.10 -0.13 -6.04 16 22 C -0.04 -0.39 11.24 -17.77 -0.20 -0.59 16 23 C -0.04 -0.34 5.70 -35.68 -0.20 -0.54 16 24 C 0.02 0.11 0.93 -155.66 -0.15 -0.03 16 25 C -0.14 -0.68 8.35 37.16 0.31 -0.37 16 26 C -0.14 -0.84 8.06 37.16 0.30 -0.54 16 27 C -0.14 -0.71 8.35 37.16 0.31 -0.40 16 28 O -0.20 -2.09 10.24 5.38 0.06 -2.03 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.02 0.36 7.75 -51.93 -0.40 -0.04 16 36 H 0.38 10.13 7.67 -40.82 -0.31 9.82 16 37 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 38 H 0.40 4.12 8.60 -40.82 -0.35 3.77 16 39 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.12 1.22 8.10 -51.93 -0.42 0.80 16 42 H 0.10 0.92 8.10 -51.93 -0.42 0.50 16 43 H 0.18 1.36 8.06 -52.49 -0.42 0.94 16 44 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.07 0.24 8.14 -51.93 -0.42 -0.19 16 46 H 0.06 0.28 8.02 -51.93 -0.42 -0.13 16 47 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 48 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 49 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 50 H 0.06 0.30 8.02 -51.93 -0.42 -0.12 16 51 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 52 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 428.80 15.07 6.46 6.46 Total: -1.00 -34.48 428.80 -8.18 -42.66 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: -9.44 Total: 7.16 kcal Atomic # 6 Polarization: -1.87 SS G_CDS: -0.34 Total: -2.20 kcal Atomic # 7 Polarization: -61.37 SS G_CDS: 0.02 Total: -61.35 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: 0.14 Total: -10.35 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 6.46 Total: 6.46 kcal Total: -34.48 -8.18 -42.66 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482841404.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.402 kcal (2) G-P(sol) polarization free energy of solvation -34.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds