Wall clock time and date at job start Tue Mar 31 2020 20:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.46925 * 2 1 4 4 C 1.52995 * 109.47023 * 119.99562 * 2 1 3 5 5 C 1.50702 * 109.47148 * 185.00248 * 4 2 1 6 6 O 1.21280 * 119.99931 * 0.02562 * 5 4 2 7 7 N 1.34778 * 119.99880 * 180.02562 * 5 4 2 8 8 C 1.46499 * 119.99688 * 180.02562 * 7 5 4 9 9 C 1.53005 * 109.47275 * 179.97438 * 8 7 5 10 10 H 1.08995 * 112.96060 * 55.32802 * 9 8 7 11 11 C 1.53944 * 113.77199 * 187.00885 * 9 8 7 12 12 C 1.53942 * 86.28984 * 137.90448 * 11 9 8 13 13 N 1.47584 * 113.76663 * 283.65195 * 9 8 7 14 14 C 1.36935 * 134.49196 * 41.06775 * 13 9 8 15 15 H 1.08007 * 119.99971 * 359.97438 * 14 13 9 16 16 C 1.38807 * 120.00065 * 180.02562 * 14 13 9 17 17 N 1.31622 * 120.00045 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00262 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47001 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.47327 * 119.99510 * 18 16 14 21 21 H 1.48508 * 109.46932 * 239.99533 * 18 16 14 22 22 N 1.46499 * 109.47070 * 239.99877 * 2 1 3 23 23 C 1.34777 * 120.00199 * 85.00207 * 22 2 1 24 24 O 1.21283 * 119.99750 * 359.97438 * 23 22 2 25 25 C 1.50702 * 119.99928 * 180.27479 * 23 22 2 26 26 C 1.54267 * 110.03146 * 296.88866 * 25 23 22 27 27 C 1.54883 * 104.19698 * 217.10957 * 26 25 23 28 28 C 1.54887 * 102.75125 * 37.93620 * 27 26 25 29 29 C 1.53866 * 110.03136 * 179.72321 * 25 23 22 30 30 H 1.09005 * 109.47473 * 60.00296 * 1 2 3 31 31 H 1.08998 * 109.46925 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47598 * 300.00405 * 1 2 3 33 33 H 1.09000 * 109.47218 * 305.00067 * 4 2 1 34 34 H 1.09000 * 109.47293 * 65.00233 * 4 2 1 35 35 H 0.97001 * 120.00235 * 359.97438 * 7 5 4 36 36 H 1.09000 * 109.46821 * 299.99540 * 8 7 5 37 37 H 1.09000 * 109.47320 * 59.99480 * 8 7 5 38 38 H 1.09002 * 113.74331 * 252.25558 * 11 9 8 39 39 H 1.09002 * 113.73854 * 23.56097 * 11 9 8 40 40 H 1.09004 * 113.76730 * 90.69298 * 12 11 9 41 41 H 1.09000 * 113.76857 * 221.98033 * 12 11 9 42 42 H 0.96995 * 120.00302 * 180.02562 * 17 16 14 43 43 H 0.97000 * 119.99484 * 264.99304 * 22 2 1 44 44 H 1.09003 * 110.01769 * 58.32789 * 25 23 22 45 45 H 1.09008 * 110.48552 * 335.78661 * 26 25 23 46 46 H 1.09003 * 110.48850 * 98.42446 * 26 25 23 47 47 H 1.09009 * 110.75431 * 279.62785 * 27 26 25 48 48 H 1.09001 * 110.91657 * 156.33284 * 27 26 25 49 49 H 1.08997 * 110.48935 * 203.37990 * 28 27 26 50 50 H 1.09003 * 110.59575 * 80.79533 * 28 27 26 51 51 H 1.09002 * 110.03256 * 238.56639 * 29 25 23 52 52 H 1.09007 * 110.03460 * 359.95128 * 29 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5419 -0.6148 1.3128 6 8 4.1449 -0.0202 0.4446 7 7 4.2149 -1.1803 2.3344 8 6 5.6749 -1.0764 2.3964 9 6 6.1849 -1.7976 3.6457 10 1 5.8587 -2.8362 3.7001 11 6 7.6909 -1.6061 3.9014 12 6 7.3151 -1.4317 5.3841 13 7 5.9754 -1.0420 4.8960 14 6 4.9517 -0.2846 5.3995 15 1 4.0473 -0.1486 4.8248 16 6 5.0767 0.3093 6.6478 17 7 6.1790 0.1441 7.3478 18 14 3.6799 1.3420 7.3350 19 1 2.5601 1.3713 6.3602 20 1 3.2090 0.7501 8.6129 21 1 4.1607 2.7259 7.5778 22 7 2.0183 -0.6906 -1.1961 23 6 2.1471 -0.0183 -2.3571 24 8 1.8582 1.1583 -2.4117 25 6 2.6435 -0.7303 -3.5891 26 6 4.0861 -1.2293 -3.3658 27 6 4.7738 -1.0301 -4.7392 28 6 4.1672 0.3061 -5.2346 29 6 2.6951 0.2459 -4.7772 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.6053 -0.2616 2.1370 34 1 1.7516 -1.7714 1.2057 35 1 3.7325 -1.6555 3.0290 36 1 6.1098 -1.5353 1.5085 37 1 5.9628 -0.0260 2.4407 38 1 8.2867 -2.4966 3.7015 39 1 8.1026 -0.7063 3.4443 40 1 7.3204 -2.3626 5.9511 41 1 7.8555 -0.6269 5.8825 42 1 6.2662 0.5587 8.2203 43 1 2.2491 -1.6318 -1.1525 44 1 1.9894 -1.5700 -3.8238 45 1 4.5821 -0.6322 -2.6005 46 1 4.0865 -2.2834 -3.0882 47 1 4.5220 -1.8442 -5.4190 48 1 5.8544 -0.9448 -4.6245 49 1 4.2268 0.3727 -6.3209 50 1 4.6757 1.1526 -4.7731 51 1 2.0667 -0.1204 -5.5890 52 1 2.3603 1.2346 -4.4631 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483705521.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:16:41 Heat of formation + Delta-G solvation = -44.012893 kcal Electronic energy + Delta-G solvation = -30102.743597 eV Core-core repulsion = 26102.902937 eV Total energy + Delta-G solvation = -3999.840660 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.37953 -39.38918 -38.01245 -37.27848 -35.63570 -34.01425 -32.24075 -31.89836 -29.32731 -28.85408 -28.64896 -27.94646 -26.85384 -23.40954 -23.09711 -22.13148 -21.07809 -20.78987 -20.17254 -19.61759 -19.11048 -17.56628 -17.14775 -16.44508 -16.38665 -15.83929 -15.62602 -15.30704 -14.98638 -14.70671 -14.35938 -14.15747 -13.83527 -13.70439 -13.47183 -13.38414 -13.13628 -12.94598 -12.46104 -12.29890 -12.02482 -11.81737 -11.73753 -11.48896 -11.45130 -11.28538 -11.25975 -11.14703 -11.09203 -11.04617 -10.92466 -10.78099 -10.67208 -10.56621 -10.05003 -9.78909 -9.68300 -9.66195 -9.36063 -9.03205 -8.84396 -8.58921 -6.93457 -5.80498 -3.13063 2.70898 2.91700 3.17301 3.34680 3.39079 3.42886 3.49742 4.30224 4.38931 4.42156 4.55336 4.62552 4.83227 5.01989 5.08418 5.10360 5.14704 5.27249 5.29383 5.34561 5.35745 5.39985 5.44922 5.49081 5.50613 5.57240 5.60023 5.67328 5.70375 5.75552 5.87401 5.88019 5.96922 6.01556 6.05294 6.10275 6.15940 6.19648 6.28363 6.36701 6.52014 6.58160 6.68685 6.86693 7.20412 7.36988 7.51178 7.54855 7.87217 7.93878 8.28709 8.54648 8.99666 9.67128 10.55465 11.36472 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014142 B = 0.002721 C = 0.002397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1979.458856 B =10288.976997 C =11678.511675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.158 3.842 3 H 0.096 0.904 4 C -0.154 4.154 5 C 0.505 3.495 6 O -0.540 6.540 7 N -0.715 5.715 8 C 0.125 3.875 9 C 0.126 3.874 10 H 0.048 0.952 11 C -0.156 4.156 12 C 0.159 3.841 13 N -0.603 5.603 14 C -0.219 4.219 15 H 0.079 0.921 16 C -0.008 4.008 17 N -0.919 5.919 18 Si 0.908 3.092 19 H -0.280 1.280 20 H -0.291 1.291 21 H -0.290 1.290 22 N -0.712 5.712 23 C 0.526 3.474 24 O -0.542 6.542 25 C -0.113 4.113 26 C -0.115 4.115 27 C -0.123 4.123 28 C -0.124 4.124 29 C -0.118 4.118 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.067 0.933 33 H 0.109 0.891 34 H 0.095 0.905 35 H 0.402 0.598 36 H 0.058 0.942 37 H 0.070 0.930 38 H 0.053 0.947 39 H 0.076 0.924 40 H 0.027 0.973 41 H 0.073 0.927 42 H 0.253 0.747 43 H 0.395 0.605 44 H 0.093 0.907 45 H 0.079 0.921 46 H 0.069 0.931 47 H 0.066 0.934 48 H 0.068 0.932 49 H 0.064 0.936 50 H 0.067 0.933 51 H 0.064 0.936 52 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.962 -7.836 -20.183 22.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.053 3.947 3 H 0.114 0.886 4 C -0.194 4.194 5 C 0.290 3.710 6 O -0.418 6.418 7 N -0.365 5.365 8 C 0.000 4.000 9 C 0.019 3.981 10 H 0.066 0.934 11 C -0.195 4.195 12 C 0.033 3.967 13 N -0.329 5.329 14 C -0.346 4.346 15 H 0.097 0.903 16 C -0.204 4.204 17 N -0.566 5.566 18 Si 0.738 3.262 19 H -0.205 1.205 20 H -0.218 1.218 21 H -0.217 1.217 22 N -0.362 5.362 23 C 0.312 3.688 24 O -0.419 6.419 25 C -0.134 4.134 26 C -0.153 4.153 27 C -0.161 4.161 28 C -0.162 4.162 29 C -0.156 4.156 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.127 0.873 34 H 0.113 0.887 35 H 0.236 0.764 36 H 0.076 0.924 37 H 0.088 0.912 38 H 0.072 0.928 39 H 0.095 0.905 40 H 0.045 0.955 41 H 0.091 0.909 42 H 0.063 0.937 43 H 0.229 0.771 44 H 0.111 0.889 45 H 0.097 0.903 46 H 0.088 0.912 47 H 0.085 0.915 48 H 0.087 0.913 49 H 0.083 0.917 50 H 0.086 0.914 51 H 0.083 0.917 52 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -6.891 -6.335 -20.573 22.602 hybrid contribution -0.941 -0.312 1.157 1.523 sum -7.832 -6.648 -19.416 21.966 Atomic orbital electron populations 1.22187 0.94963 1.02073 1.02856 1.20641 0.93174 0.98229 0.82630 0.88599 1.22062 0.93807 1.03227 1.00320 1.20473 0.89564 0.79028 0.81892 1.90710 1.70152 1.42013 1.38917 1.45995 1.08580 1.56060 1.25878 1.21713 0.78850 1.01709 0.97704 1.22492 0.93911 0.94349 0.87377 0.93429 1.23763 0.94734 1.00394 1.00630 1.22231 0.85639 0.97759 0.91026 1.46106 1.16288 1.54823 1.15729 1.18966 0.94401 1.21682 0.99576 0.90324 1.24768 0.97662 1.00952 0.97053 1.69824 1.25823 1.47912 1.13081 0.86121 0.81256 0.80015 0.78785 1.20541 1.21801 1.21717 1.45833 1.67357 1.13520 1.09535 1.20440 0.76553 0.87185 0.84573 1.90647 1.50229 1.16096 1.84936 1.21934 0.98489 0.99159 0.93819 1.22359 0.93204 1.01203 0.98536 1.22487 0.99920 0.97529 0.96144 1.22356 0.95608 0.97873 1.00339 1.22151 0.97032 1.00879 0.95559 0.91867 0.92469 0.91369 0.87298 0.88687 0.76390 0.92405 0.91191 0.92806 0.90532 0.95547 0.90876 0.93710 0.77110 0.88867 0.90253 0.91224 0.91510 0.91328 0.91709 0.91437 0.91738 0.89241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.57 9.48 37.16 0.35 -1.21 16 2 C 0.16 1.87 2.13 -67.93 -0.14 1.72 16 3 H 0.10 1.48 7.39 -51.93 -0.38 1.10 16 4 C -0.15 -1.66 5.24 -27.88 -0.15 -1.80 16 5 C 0.51 7.57 7.69 -10.98 -0.08 7.48 16 6 O -0.54 -9.94 15.35 5.56 0.09 -9.85 16 7 N -0.71 -11.05 5.35 -60.29 -0.32 -11.37 16 8 C 0.12 2.16 5.54 -4.04 -0.02 2.14 16 9 C 0.13 2.33 4.33 -66.86 -0.29 2.04 16 10 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 11 C -0.16 -2.79 7.86 -25.80 -0.20 -2.99 16 12 C 0.16 3.57 7.52 -2.85 -0.02 3.55 16 13 N -0.60 -14.33 3.59 -169.72 -0.61 -14.93 16 14 C -0.22 -5.73 10.51 -15.06 -0.16 -5.89 16 15 H 0.08 1.96 7.49 -52.48 -0.39 1.57 16 16 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 17 N -0.92 -26.71 11.40 55.49 0.63 -26.08 16 18 Si 0.91 21.70 29.55 -169.99 -5.02 16.67 16 19 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 21 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 22 N -0.71 -7.93 4.17 -53.81 -0.22 -8.15 16 23 C 0.53 6.81 6.96 -10.98 -0.08 6.73 16 24 O -0.54 -9.13 14.87 5.55 0.08 -9.05 16 25 C -0.11 -1.10 3.30 -90.66 -0.30 -1.40 16 26 C -0.12 -1.09 6.31 -25.08 -0.16 -1.25 16 27 C -0.12 -1.03 6.91 -24.74 -0.17 -1.20 16 28 C -0.12 -1.13 6.83 -25.07 -0.17 -1.30 16 29 C -0.12 -1.18 6.40 -25.62 -0.16 -1.34 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.40 5.86 8.34 -40.82 -0.34 5.52 16 36 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 38 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.08 1.36 8.10 -51.93 -0.42 0.94 16 40 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.07 1.85 7.18 -51.93 -0.37 1.47 16 42 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 43 H 0.40 3.49 8.60 -40.82 -0.35 3.14 16 44 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.08 0.98 7.85 -51.92 -0.41 0.58 16 46 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.07 0.47 8.14 -51.92 -0.42 0.04 16 48 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 49 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 50 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 51 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 52 H 0.09 1.11 6.39 -51.92 -0.33 0.78 16 LS Contribution 416.18 15.07 6.27 6.27 Total: -1.00 -33.62 416.18 -10.28 -43.91 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: -9.32 Total: 7.62 kcal Atomic # 6 Polarization: 6.83 SS G_CDS: -1.85 Total: 4.97 kcal Atomic # 7 Polarization: -60.02 SS G_CDS: -0.52 Total: -60.54 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: 0.17 Total: -18.90 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -33.62 -10.28 -43.91 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483705521.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.107 kcal (2) G-P(sol) polarization free energy of solvation -33.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds