Wall clock time and date at job start Tue Mar 31 2020 20:31:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.46764 * 2 1 4 4 N 1.46898 * 109.47153 * 119.99938 * 2 1 3 5 5 C 1.46900 * 110.99783 * 275.00461 * 4 2 1 6 6 C 1.50706 * 109.46884 * 180.02562 * 5 4 2 7 7 O 1.21284 * 119.99935 * 359.97438 * 6 5 4 8 8 N 1.34780 * 119.99727 * 179.97438 * 6 5 4 9 9 C 1.37092 * 119.99598 * 179.97438 * 8 6 5 10 10 H 1.07997 * 120.00609 * 0.02562 * 9 8 6 11 11 C 1.38951 * 119.99920 * 180.02562 * 9 8 6 12 12 N 1.31411 * 119.99846 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 120.00222 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.46903 * 359.97438 * 13 11 9 15 15 H 1.48506 * 109.47179 * 119.99639 * 13 11 9 16 16 H 1.48494 * 109.47136 * 239.99901 * 13 11 9 17 17 C 1.53001 * 109.47078 * 240.00224 * 2 1 3 18 18 H 1.08998 * 109.46895 * 175.00213 * 17 2 1 19 19 C 1.52998 * 109.46800 * 294.99849 * 17 2 1 20 20 N 1.46494 * 109.47546 * 54.99676 * 17 2 1 21 21 C 1.34776 * 120.00093 * 154.99663 * 20 17 2 22 22 O 1.21615 * 119.99904 * 0.02562 * 21 20 17 23 23 C 1.47106 * 119.99970 * 180.02562 * 21 20 17 24 24 C 1.31560 * 119.85014 * 180.02562 * 23 21 20 25 25 C 1.51413 * 120.28834 * 179.97438 * 24 23 21 26 26 C 1.53034 * 108.57323 * 288.43427 * 25 24 23 27 27 C 1.51779 * 110.80848 * 85.71732 * 26 25 24 28 28 C 1.51782 * 113.84160 * 293.05701 * 27 26 25 29 29 C 1.51449 * 119.88744 * 0.06482 * 23 21 20 30 30 H 1.09007 * 109.47009 * 60.00055 * 1 2 3 31 31 H 1.08995 * 109.46873 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47147 * 300.00142 * 1 2 3 33 33 H 1.00899 * 111.00358 * 151.04728 * 4 2 1 34 34 H 1.09003 * 109.47135 * 299.99606 * 5 4 2 35 35 H 1.08996 * 109.47889 * 59.99550 * 5 4 2 36 36 H 0.96998 * 120.00158 * 0.02562 * 8 6 5 37 37 H 0.97001 * 119.99974 * 180.02562 * 12 11 9 38 38 H 1.09006 * 109.47436 * 300.00206 * 19 17 2 39 39 H 1.09000 * 109.47595 * 60.00338 * 19 17 2 40 40 H 1.09004 * 109.46933 * 180.02562 * 19 17 2 41 41 H 0.96999 * 120.00234 * 335.00397 * 20 17 2 42 42 H 1.07997 * 119.85495 * 0.02592 * 24 23 21 43 43 H 1.09007 * 109.61709 * 168.70908 * 25 24 23 44 44 H 1.09004 * 109.77213 * 48.25418 * 25 24 23 45 45 H 1.09000 * 109.21012 * 325.37025 * 26 25 24 46 46 H 1.08997 * 109.20840 * 206.05528 * 26 25 24 47 47 H 1.08997 * 108.61113 * 171.93088 * 27 26 25 48 48 H 1.09000 * 108.60928 * 54.18284 * 27 26 25 49 49 H 1.09002 * 109.21025 * 187.28294 * 28 27 26 50 50 H 1.08999 * 109.20670 * 306.64469 * 28 27 26 51 51 H 1.09005 * 109.67355 * 131.88541 * 29 23 21 52 52 H 1.09000 * 109.60703 * 11.31357 * 29 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.0824 0.2226 2.3469 6 6 2.5884 -0.5215 3.5557 7 8 2.8688 -1.6983 3.4699 8 7 2.7295 0.1209 4.7322 9 6 3.1893 -0.5561 5.8320 10 1 3.4390 -1.6041 5.7557 11 6 3.3342 0.1059 7.0450 12 7 3.0300 1.3810 7.1380 13 14 3.9615 -0.8163 8.5434 14 1 4.2300 -2.2303 8.1777 15 1 5.2150 -0.1827 9.0258 16 1 2.9378 -0.7693 9.6180 17 6 2.0400 -0.7212 -1.2493 18 1 3.1263 -0.6443 -1.2951 19 6 1.6352 -2.1954 -1.1880 20 7 1.4559 -0.1037 -2.4424 21 6 2.0913 -0.1938 -3.6275 22 8 3.1494 -0.7881 -3.7066 23 6 1.5050 0.4268 -4.8255 24 6 2.1275 0.3366 -5.9810 25 6 1.5327 0.9712 -7.2204 26 6 0.3086 0.1569 -7.6453 27 6 -0.9310 0.6188 -6.9011 28 6 -0.8945 0.3320 -5.4111 29 6 0.1879 1.1676 -4.7239 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 2.9173 -1.1205 1.0288 34 1 2.7588 1.0463 2.1182 35 1 1.0870 0.6164 2.5525 36 1 2.5049 1.0620 4.8009 37 1 3.1315 1.8433 7.9847 38 1 2.0699 -2.6550 -0.3002 39 1 0.5489 -2.2724 -1.1421 40 1 1.9990 -2.7093 -2.0778 41 1 0.6118 0.3701 -2.3795 42 1 3.0665 -0.1930 -6.0459 43 1 2.2705 0.9687 -8.0229 44 1 1.2328 1.9962 -7.0022 45 1 0.4856 -0.8965 -7.4283 46 1 0.1503 0.2799 -8.7167 47 1 -1.8002 0.1202 -7.3301 48 1 -1.0435 1.6932 -7.0459 49 1 -1.8642 0.5731 -4.9756 50 1 -0.6841 -0.7260 -5.2546 51 1 0.2723 2.1356 -5.2178 52 1 -0.0714 1.3104 -3.6749 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485139526.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:57 Heat of formation + Delta-G solvation = -74.770353 kcal Electronic energy + Delta-G solvation = -29204.689276 eV Core-core repulsion = 25203.514872 eV Total energy + Delta-G solvation = -4001.174404 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.50734 -38.79130 -38.21505 -37.21310 -34.51027 -33.80824 -33.01669 -32.44869 -31.25917 -30.67074 -29.11912 -26.58256 -26.17908 -25.05414 -24.41898 -23.47000 -21.61420 -20.80385 -19.82498 -19.34406 -18.65920 -17.89992 -17.57965 -16.49759 -16.10665 -15.59694 -15.50153 -15.27689 -14.98531 -14.86418 -14.45357 -14.25347 -14.04348 -13.93968 -13.75518 -13.54790 -13.46752 -13.12013 -12.79729 -12.50583 -12.43447 -12.18915 -12.09145 -12.02320 -11.80460 -11.60560 -11.53792 -11.41809 -11.16187 -11.13074 -11.10067 -10.92824 -10.89784 -10.66972 -10.33748 -10.21987 -9.97093 -9.51554 -9.44873 -9.15956 -8.46039 -8.10972 -7.95685 -6.41435 -3.82091 1.15567 2.96697 3.11189 3.16919 3.27513 3.35043 3.91244 4.09622 4.17726 4.30632 4.37453 4.38396 4.50667 4.56594 4.63167 4.75042 4.87248 4.91553 5.03194 5.13850 5.16125 5.18915 5.25218 5.26548 5.31440 5.37476 5.44644 5.57590 5.59290 5.62181 5.66379 5.67840 5.72381 5.76298 5.81464 5.91154 5.94547 5.95426 5.97704 6.11747 6.18178 6.24534 6.28451 6.41926 6.46275 7.16945 7.37032 7.56003 7.61077 8.06982 8.08633 8.61614 9.18495 9.54747 10.06090 10.76399 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.032167 B = 0.001741 C = 0.001717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.250031 B =16078.265030 C =16299.633324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.076 3.924 3 H 0.047 0.953 4 N -0.656 5.656 5 C 0.050 3.950 6 C 0.441 3.559 7 O -0.582 6.582 8 N -0.564 5.564 9 C -0.298 4.298 10 H 0.104 0.896 11 C 0.021 3.979 12 N -0.902 5.902 13 Si 0.930 3.070 14 H -0.268 1.268 15 H -0.282 1.282 16 H -0.282 1.282 17 C 0.141 3.859 18 H 0.086 0.914 19 C -0.156 4.156 20 N -0.718 5.718 21 C 0.552 3.448 22 O -0.544 6.544 23 C -0.181 4.181 24 C -0.070 4.070 25 C -0.097 4.097 26 C -0.115 4.115 27 C -0.119 4.119 28 C -0.117 4.117 29 C -0.081 4.081 30 H 0.047 0.953 31 H 0.070 0.930 32 H 0.061 0.939 33 H 0.351 0.649 34 H 0.044 0.956 35 H 0.086 0.914 36 H 0.392 0.608 37 H 0.271 0.729 38 H 0.081 0.919 39 H 0.059 0.941 40 H 0.052 0.948 41 H 0.399 0.601 42 H 0.126 0.874 43 H 0.074 0.926 44 H 0.079 0.921 45 H 0.065 0.935 46 H 0.067 0.933 47 H 0.060 0.940 48 H 0.060 0.940 49 H 0.068 0.932 50 H 0.065 0.935 51 H 0.080 0.920 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.415 4.135 -28.662 30.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.034 4.034 3 H 0.065 0.935 4 N -0.290 5.290 5 C -0.082 4.082 6 C 0.227 3.773 7 O -0.466 6.466 8 N -0.201 5.201 9 C -0.428 4.428 10 H 0.122 0.878 11 C -0.180 4.180 12 N -0.544 5.544 13 Si 0.757 3.243 14 H -0.192 1.192 15 H -0.208 1.208 16 H -0.208 1.208 17 C 0.036 3.964 18 H 0.104 0.896 19 C -0.215 4.215 20 N -0.372 5.372 21 C 0.341 3.659 22 O -0.423 6.423 23 C -0.184 4.184 24 C -0.089 4.089 25 C -0.134 4.134 26 C -0.152 4.152 27 C -0.157 4.157 28 C -0.154 4.154 29 C -0.118 4.118 30 H 0.066 0.934 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.172 0.828 34 H 0.062 0.938 35 H 0.105 0.895 36 H 0.225 0.775 37 H 0.081 0.919 38 H 0.100 0.900 39 H 0.078 0.922 40 H 0.071 0.929 41 H 0.237 0.763 42 H 0.144 0.856 43 H 0.093 0.907 44 H 0.097 0.903 45 H 0.084 0.916 46 H 0.086 0.914 47 H 0.079 0.921 48 H 0.079 0.921 49 H 0.087 0.913 50 H 0.084 0.916 51 H 0.098 0.902 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -9.083 2.782 -28.400 29.947 hybrid contribution 0.535 1.072 0.790 1.435 sum -8.548 3.854 -27.611 29.159 Atomic orbital electron populations 1.21881 0.94515 1.02937 1.00819 1.21718 0.96503 0.95909 0.89317 0.93514 1.60188 1.34959 1.31686 1.02183 1.21738 1.01323 0.93898 0.91259 1.19784 0.84932 0.88195 0.84412 1.90526 1.55228 1.16104 1.84717 1.41865 1.57803 1.12431 1.07998 1.19760 1.39779 0.96478 0.86776 0.87841 1.25264 0.97694 0.95788 0.99252 1.69621 1.48779 1.08876 1.27081 0.85797 0.78211 0.79641 0.80681 1.19207 1.20784 1.20759 1.21081 0.98697 0.93462 0.83157 0.89553 1.22117 1.02009 0.94642 1.02694 1.46146 1.25964 1.56933 1.08199 1.18417 0.84274 0.79694 0.83541 1.90796 1.22536 1.43239 1.85696 1.21217 0.98839 1.04362 0.93944 1.23346 0.98166 0.94252 0.93168 1.20968 0.97575 0.99437 0.95426 1.21262 0.93882 1.00287 0.99774 1.21138 0.97871 1.01490 0.95197 1.21312 0.98289 1.00570 0.95240 1.20784 0.91515 0.98470 1.01036 0.93398 0.91119 0.91999 0.82801 0.93829 0.89534 0.77487 0.91947 0.90002 0.92193 0.92891 0.76313 0.85644 0.90708 0.90279 0.91614 0.91418 0.92085 0.92099 0.91323 0.91609 0.90182 0.91452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 8.93 37.16 0.33 -1.16 16 2 C 0.08 0.92 2.66 -67.71 -0.18 0.74 16 3 H 0.05 0.55 7.80 -51.93 -0.40 0.15 16 4 N -0.66 -10.29 5.14 -107.99 -0.55 -10.85 16 5 C 0.05 0.88 5.97 -4.97 -0.03 0.85 16 6 C 0.44 10.39 7.82 -10.98 -0.09 10.30 16 7 O -0.58 -15.78 15.78 5.55 0.09 -15.69 16 8 N -0.56 -14.32 5.29 -10.96 -0.06 -14.37 16 9 C -0.30 -8.36 9.68 -14.94 -0.14 -8.50 16 10 H 0.10 3.05 7.16 -52.49 -0.38 2.67 16 11 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 12 N -0.90 -24.60 13.05 55.50 0.72 -23.88 16 13 Si 0.93 21.16 29.55 -169.99 -5.02 16.13 16 14 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 15 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 16 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 17 C 0.14 1.68 2.30 -67.93 -0.16 1.53 16 18 H 0.09 1.20 7.58 -51.93 -0.39 0.80 16 19 C -0.16 -1.94 9.01 37.16 0.33 -1.61 16 20 N -0.72 -7.31 4.95 -54.99 -0.27 -7.58 16 21 C 0.55 6.53 7.71 -12.66 -0.10 6.43 16 22 O -0.54 -8.56 15.84 5.26 0.08 -8.48 16 23 C -0.18 -1.57 5.10 -102.51 -0.52 -2.09 16 24 C -0.07 -0.56 8.92 -35.81 -0.32 -0.88 16 25 C -0.10 -0.52 5.61 -27.52 -0.15 -0.68 16 26 C -0.11 -0.57 5.66 -27.33 -0.15 -0.72 16 27 C -0.12 -0.56 5.27 -27.97 -0.15 -0.70 16 28 C -0.12 -0.63 5.66 -27.33 -0.15 -0.78 16 29 C -0.08 -0.48 5.37 -27.50 -0.15 -0.63 16 30 H 0.05 0.37 6.29 -51.92 -0.33 0.04 16 31 H 0.07 0.79 6.56 -51.93 -0.34 0.45 16 32 H 0.06 0.68 7.45 -51.93 -0.39 0.29 16 33 H 0.35 5.85 7.61 -39.29 -0.30 5.55 16 34 H 0.04 0.69 8.06 -51.93 -0.42 0.28 16 35 H 0.09 1.38 7.44 -51.93 -0.39 0.99 16 36 H 0.39 9.49 7.90 -40.82 -0.32 9.17 16 37 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 38 H 0.08 1.13 7.17 -51.93 -0.37 0.75 16 39 H 0.06 0.69 6.56 -51.93 -0.34 0.35 16 40 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.40 3.13 4.36 -40.82 -0.18 2.96 16 42 H 0.13 1.19 7.44 -52.49 -0.39 0.79 16 43 H 0.07 0.34 8.14 -51.92 -0.42 -0.08 16 44 H 0.08 0.38 6.75 -51.93 -0.35 0.03 16 45 H 0.07 0.39 7.85 -51.93 -0.41 -0.02 16 46 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 47 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 48 H 0.06 0.25 7.88 -51.93 -0.41 -0.16 16 49 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 50 H 0.07 0.44 7.85 -51.93 -0.41 0.03 16 51 H 0.08 0.41 6.74 -51.93 -0.35 0.06 16 52 H 0.07 0.36 5.99 -51.93 -0.31 0.05 16 LS Contribution 403.58 15.07 6.08 6.08 Total: -1.00 -32.89 403.58 -9.08 -41.97 By element: Atomic # 1 Polarization: 22.52 SS G_CDS: -8.42 Total: 14.09 kcal Atomic # 6 Polarization: 4.30 SS G_CDS: -1.72 Total: 2.57 kcal Atomic # 7 Polarization: -56.52 SS G_CDS: -0.16 Total: -56.68 kcal Atomic # 8 Polarization: -24.34 SS G_CDS: 0.17 Total: -24.17 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -32.89 -9.08 -41.97 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485139526.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.804 kcal (2) G-P(sol) polarization free energy of solvation -32.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds