Wall clock time and date at job start Tue Mar 31 2020 20:31:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.46764 * 2 1 4 4 N 1.46898 * 109.47153 * 119.99938 * 2 1 3 5 5 C 1.46900 * 110.99783 * 275.00461 * 4 2 1 6 6 C 1.50706 * 109.46884 * 180.02562 * 5 4 2 7 7 O 1.21284 * 119.99935 * 359.97438 * 6 5 4 8 8 N 1.34780 * 119.99727 * 179.97438 * 6 5 4 9 9 C 1.37092 * 119.99598 * 179.97438 * 8 6 5 10 10 H 1.07997 * 120.00609 * 0.02562 * 9 8 6 11 11 C 1.38951 * 119.99920 * 180.02562 * 9 8 6 12 12 N 1.31411 * 119.99846 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 120.00222 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.46903 * 359.97438 * 13 11 9 15 15 H 1.48506 * 109.47179 * 119.99639 * 13 11 9 16 16 H 1.48494 * 109.47136 * 239.99901 * 13 11 9 17 17 C 1.53001 * 109.47078 * 240.00224 * 2 1 3 18 18 H 1.08998 * 109.46895 * 175.00213 * 17 2 1 19 19 C 1.52998 * 109.46800 * 294.99849 * 17 2 1 20 20 N 1.46494 * 109.47546 * 54.99676 * 17 2 1 21 21 C 1.34776 * 120.00093 * 154.99663 * 20 17 2 22 22 O 1.21615 * 119.99904 * 0.02562 * 21 20 17 23 23 C 1.47106 * 119.99970 * 180.02562 * 21 20 17 24 24 C 1.31560 * 119.85014 * 180.02562 * 23 21 20 25 25 C 1.51413 * 120.28834 * 179.97438 * 24 23 21 26 26 C 1.53034 * 108.57323 * 288.43427 * 25 24 23 27 27 C 1.51779 * 110.80848 * 85.71732 * 26 25 24 28 28 C 1.51782 * 113.84160 * 293.05701 * 27 26 25 29 29 C 1.51449 * 119.88744 * 0.06482 * 23 21 20 30 30 H 1.09007 * 109.47009 * 60.00055 * 1 2 3 31 31 H 1.08995 * 109.46873 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47147 * 300.00142 * 1 2 3 33 33 H 1.00899 * 111.00358 * 151.04728 * 4 2 1 34 34 H 1.09003 * 109.47135 * 299.99606 * 5 4 2 35 35 H 1.08996 * 109.47889 * 59.99550 * 5 4 2 36 36 H 0.96998 * 120.00158 * 0.02562 * 8 6 5 37 37 H 0.97001 * 119.99974 * 180.02562 * 12 11 9 38 38 H 1.09006 * 109.47436 * 300.00206 * 19 17 2 39 39 H 1.09000 * 109.47595 * 60.00338 * 19 17 2 40 40 H 1.09004 * 109.46933 * 180.02562 * 19 17 2 41 41 H 0.96999 * 120.00234 * 335.00397 * 20 17 2 42 42 H 1.07997 * 119.85495 * 0.02592 * 24 23 21 43 43 H 1.09007 * 109.61709 * 168.70908 * 25 24 23 44 44 H 1.09004 * 109.77213 * 48.25418 * 25 24 23 45 45 H 1.09000 * 109.21012 * 325.37025 * 26 25 24 46 46 H 1.08997 * 109.20840 * 206.05528 * 26 25 24 47 47 H 1.08997 * 108.61113 * 171.93088 * 27 26 25 48 48 H 1.09000 * 108.60928 * 54.18284 * 27 26 25 49 49 H 1.09002 * 109.21025 * 187.28294 * 28 27 26 50 50 H 1.08999 * 109.20670 * 306.64469 * 28 27 26 51 51 H 1.09005 * 109.67355 * 131.88541 * 29 23 21 52 52 H 1.09000 * 109.60703 * 11.31357 * 29 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.0824 0.2226 2.3469 6 6 2.5884 -0.5215 3.5557 7 8 2.8688 -1.6983 3.4699 8 7 2.7295 0.1209 4.7322 9 6 3.1893 -0.5561 5.8320 10 1 3.4390 -1.6041 5.7557 11 6 3.3342 0.1059 7.0450 12 7 3.0300 1.3810 7.1380 13 14 3.9615 -0.8163 8.5434 14 1 4.2300 -2.2303 8.1777 15 1 5.2150 -0.1827 9.0258 16 1 2.9378 -0.7693 9.6180 17 6 2.0400 -0.7212 -1.2493 18 1 3.1263 -0.6443 -1.2951 19 6 1.6352 -2.1954 -1.1880 20 7 1.4559 -0.1037 -2.4424 21 6 2.0913 -0.1938 -3.6275 22 8 3.1494 -0.7881 -3.7066 23 6 1.5050 0.4268 -4.8255 24 6 2.1275 0.3366 -5.9810 25 6 1.5327 0.9712 -7.2204 26 6 0.3086 0.1569 -7.6453 27 6 -0.9310 0.6188 -6.9011 28 6 -0.8945 0.3320 -5.4111 29 6 0.1879 1.1676 -4.7239 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 2.9173 -1.1205 1.0288 34 1 2.7588 1.0463 2.1182 35 1 1.0870 0.6164 2.5525 36 1 2.5049 1.0620 4.8009 37 1 3.1315 1.8433 7.9847 38 1 2.0699 -2.6550 -0.3002 39 1 0.5489 -2.2724 -1.1421 40 1 1.9990 -2.7093 -2.0778 41 1 0.6118 0.3701 -2.3795 42 1 3.0665 -0.1930 -6.0459 43 1 2.2705 0.9687 -8.0229 44 1 1.2328 1.9962 -7.0022 45 1 0.4856 -0.8965 -7.4283 46 1 0.1503 0.2799 -8.7167 47 1 -1.8002 0.1202 -7.3301 48 1 -1.0435 1.6932 -7.0459 49 1 -1.8642 0.5731 -4.9756 50 1 -0.6841 -0.7260 -5.2546 51 1 0.2723 2.1356 -5.2178 52 1 -0.0714 1.3104 -3.6749 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485139526.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:56 Heat of formation + Delta-G solvation = -97.541782 kcal Electronic energy + Delta-G solvation = -29205.676719 eV Core-core repulsion = 25203.514872 eV Total energy + Delta-G solvation = -4002.161847 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.38491 -40.23172 -39.21754 -38.33397 -36.07649 -35.40439 -33.65034 -33.27799 -32.96403 -31.72326 -30.09675 -28.15726 -26.74583 -26.18085 -25.57874 -24.47221 -22.45491 -21.22121 -21.13368 -20.81494 -19.95017 -19.50008 -18.26488 -17.72776 -17.40534 -16.86825 -16.69313 -16.28529 -16.05939 -15.81832 -15.72805 -15.59892 -15.20893 -15.04669 -14.49894 -14.48269 -14.27148 -14.10423 -13.85968 -13.66410 -13.53923 -13.43067 -13.12487 -13.09964 -12.90439 -12.85358 -12.57949 -12.55039 -12.40424 -12.12104 -12.08624 -11.93597 -11.69979 -11.59755 -11.51627 -11.50894 -11.31460 -10.88141 -10.36883 -10.24991 -10.01628 -9.91685 -9.39480 -8.47251 -5.95733 0.42503 1.36256 1.41661 1.55791 2.04012 2.06579 2.25661 2.30143 2.95341 3.20102 3.46777 3.59424 3.68318 3.75203 3.91181 4.00055 4.10026 4.13034 4.17035 4.24033 4.29930 4.44045 4.45321 4.48353 4.57119 4.59876 4.63421 4.74315 4.77392 4.81655 4.84541 4.88756 4.96778 4.97678 5.02043 5.24616 5.25268 5.28880 5.29828 5.34271 5.41020 5.43484 5.48234 5.52822 5.56503 5.66245 5.87299 6.08257 6.30822 6.52723 6.59861 7.12543 7.20169 7.55991 8.11476 8.70352 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.032167 B = 0.001741 C = 0.001717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.250031 B =16078.265030 C =16299.633324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.082 3.918 3 H 0.058 0.942 4 N -0.668 5.668 5 C 0.066 3.934 6 C 0.438 3.562 7 O -0.622 6.622 8 N -0.573 5.573 9 C -0.334 4.334 10 H 0.078 0.922 11 C -0.013 4.013 12 N -0.920 5.920 13 Si 0.993 3.007 14 H -0.275 1.275 15 H -0.271 1.271 16 H -0.270 1.270 17 C 0.148 3.852 18 H 0.064 0.936 19 C -0.148 4.148 20 N -0.704 5.704 21 C 0.546 3.454 22 O -0.593 6.593 23 C -0.189 4.189 24 C -0.068 4.068 25 C -0.091 4.091 26 C -0.114 4.114 27 C -0.120 4.120 28 C -0.115 4.115 29 C -0.076 4.076 30 H 0.080 0.920 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.343 0.657 34 H 0.065 0.935 35 H 0.109 0.891 36 H 0.397 0.603 37 H 0.278 0.722 38 H 0.064 0.936 39 H 0.072 0.928 40 H 0.040 0.960 41 H 0.413 0.587 42 H 0.103 0.897 43 H 0.083 0.917 44 H 0.093 0.907 45 H 0.050 0.950 46 H 0.081 0.919 47 H 0.065 0.935 48 H 0.073 0.927 49 H 0.082 0.918 50 H 0.048 0.952 51 H 0.095 0.905 52 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.275 6.082 -29.654 32.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.028 4.028 3 H 0.076 0.924 4 N -0.301 5.301 5 C -0.066 4.066 6 C 0.225 3.775 7 O -0.509 6.509 8 N -0.210 5.210 9 C -0.463 4.463 10 H 0.096 0.904 11 C -0.213 4.213 12 N -0.561 5.561 13 Si 0.816 3.184 14 H -0.199 1.199 15 H -0.196 1.196 16 H -0.195 1.195 17 C 0.042 3.958 18 H 0.082 0.918 19 C -0.207 4.207 20 N -0.358 5.358 21 C 0.336 3.664 22 O -0.475 6.475 23 C -0.192 4.192 24 C -0.088 4.088 25 C -0.128 4.128 26 C -0.151 4.151 27 C -0.157 4.157 28 C -0.153 4.153 29 C -0.113 4.113 30 H 0.098 0.902 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.162 0.838 34 H 0.083 0.917 35 H 0.127 0.873 36 H 0.231 0.769 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.091 0.909 40 H 0.059 0.941 41 H 0.254 0.746 42 H 0.121 0.879 43 H 0.102 0.898 44 H 0.112 0.888 45 H 0.068 0.932 46 H 0.100 0.900 47 H 0.084 0.916 48 H 0.092 0.908 49 H 0.101 0.899 50 H 0.067 0.933 51 H 0.113 0.887 52 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -10.995 4.778 -29.402 31.752 hybrid contribution 1.139 0.433 1.021 1.590 sum -9.856 5.211 -28.381 30.492 Atomic orbital electron populations 1.21896 0.92688 1.02978 1.02417 1.21757 0.97703 0.95845 0.87460 0.92364 1.60226 1.34582 1.32096 1.03208 1.21595 1.02508 0.93575 0.88968 1.20867 0.83198 0.87976 0.85420 1.90497 1.56578 1.18238 1.85571 1.41924 1.58313 1.12589 1.08222 1.19700 1.42062 0.95950 0.88604 0.90396 1.26027 0.97252 0.96634 1.01338 1.69674 1.48650 1.09652 1.28093 0.84875 0.78174 0.77997 0.77308 1.19918 1.19622 1.19526 1.20853 0.97566 0.93348 0.84023 0.91830 1.22019 1.02589 0.94829 1.01237 1.45973 1.26209 1.56393 1.07224 1.19018 0.83702 0.79054 0.84637 1.90773 1.24776 1.45504 1.86430 1.21263 1.00303 1.05113 0.92514 1.23513 0.97289 0.93547 0.94405 1.21015 0.97882 0.99832 0.94117 1.21265 0.93851 0.99247 1.00742 1.21152 0.97694 1.02322 0.94569 1.21315 0.98651 0.99410 0.95922 1.20840 0.89782 0.98692 1.01983 0.90160 0.91879 0.92070 0.83817 0.91720 0.87318 0.76940 0.91301 0.91683 0.90884 0.94098 0.74619 0.87862 0.89833 0.88841 0.93155 0.90011 0.91631 0.90825 0.89922 0.93302 0.88672 0.90531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 8.93 71.98 0.64 -1.92 16 2 C 0.08 1.85 2.66 44.92 0.12 1.97 16 3 H 0.06 1.23 7.80 -2.38 -0.02 1.21 16 4 N -0.67 -20.62 5.14 -495.56 -2.55 -23.17 16 5 C 0.07 2.21 5.97 85.56 0.51 2.72 16 6 C 0.44 20.86 7.82 87.66 0.69 21.54 16 7 O -0.62 -34.77 15.78 -3.04 -0.05 -34.82 16 8 N -0.57 -29.48 5.29 -306.99 -1.62 -31.10 16 9 C -0.33 -19.10 9.68 84.04 0.81 -18.28 16 10 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 11 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16 12 N -0.92 -49.65 13.05 21.66 0.28 -49.37 16 13 Si 0.99 43.26 29.55 68.60 2.03 45.29 16 14 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 15 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 16 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 17 C 0.15 3.50 2.30 44.99 0.10 3.60 16 18 H 0.06 1.83 7.58 -2.39 -0.02 1.81 16 19 C -0.15 -3.75 9.01 71.98 0.65 -3.10 16 20 N -0.70 -13.58 4.95 -446.15 -2.21 -15.79 16 21 C 0.55 12.93 7.71 86.57 0.67 13.60 16 22 O -0.59 -19.56 15.84 -4.08 -0.06 -19.62 16 23 C -0.19 -3.12 5.10 -17.87 -0.09 -3.21 16 24 C -0.07 -1.07 8.92 25.34 0.23 -0.84 16 25 C -0.09 -0.81 5.61 30.09 0.17 -0.64 16 26 C -0.11 -0.90 5.66 30.20 0.17 -0.73 16 27 C -0.12 -0.79 5.27 29.79 0.16 -0.63 16 28 C -0.12 -0.96 5.66 30.21 0.17 -0.79 16 29 C -0.08 -0.71 5.37 30.10 0.16 -0.54 16 30 H 0.08 0.92 6.29 -2.38 -0.01 0.90 16 31 H 0.06 1.26 6.56 -2.39 -0.02 1.25 16 32 H 0.06 1.15 7.45 -2.39 -0.02 1.13 16 33 H 0.34 11.66 7.61 -89.69 -0.68 10.97 16 34 H 0.06 1.93 8.06 -2.39 -0.02 1.91 16 35 H 0.11 3.22 7.44 -2.39 -0.02 3.20 16 36 H 0.40 19.27 7.90 -92.71 -0.73 18.54 16 37 H 0.28 13.98 8.31 -92.71 -0.77 13.21 16 38 H 0.06 1.87 7.17 -2.38 -0.02 1.85 16 39 H 0.07 1.63 6.56 -2.39 -0.02 1.61 16 40 H 0.04 1.11 8.14 -2.38 -0.02 1.09 16 41 H 0.41 5.44 4.36 -92.71 -0.40 5.04 16 42 H 0.10 2.08 7.44 -2.91 -0.02 2.06 16 43 H 0.08 0.61 8.14 -2.38 -0.02 0.59 16 44 H 0.09 0.61 6.75 -2.38 -0.02 0.59 16 45 H 0.05 0.56 7.85 -2.39 -0.02 0.54 16 46 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 47 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 48 H 0.07 0.33 7.88 -2.39 -0.02 0.31 16 49 H 0.08 0.47 8.14 -2.39 -0.02 0.46 16 50 H 0.05 0.58 7.85 -2.39 -0.02 0.56 16 51 H 0.10 0.64 6.74 -2.38 -0.02 0.62 16 52 H 0.08 0.55 5.99 -2.39 -0.01 0.54 16 Total: -1.00 -73.65 403.58 0.58 -73.08 By element: Atomic # 1 Polarization: 43.85 SS G_CDS: -0.87 Total: 42.98 kcal Atomic # 6 Polarization: 6.89 SS G_CDS: 5.62 Total: 12.52 kcal Atomic # 7 Polarization: -113.33 SS G_CDS: -6.09 Total: -119.42 kcal Atomic # 8 Polarization: -54.33 SS G_CDS: -0.11 Total: -54.44 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Total: -73.65 0.58 -73.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485139526.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.466 kcal (2) G-P(sol) polarization free energy of solvation -73.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds