Wall clock time and date at job start Tue Mar 31 2020 20:32:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09004 * 109.47147 * 2 1 4 4 N 1.46904 * 109.46777 * 119.99330 * 2 1 3 5 5 C 1.46903 * 111.00157 * 275.00035 * 4 2 1 6 6 C 1.50701 * 109.46865 * 180.02562 * 5 4 2 7 7 O 1.21287 * 120.00045 * 359.97438 * 6 5 4 8 8 N 1.34774 * 119.99487 * 180.02562 * 6 5 4 9 9 C 1.37106 * 119.99725 * 179.97438 * 8 6 5 10 10 H 1.07998 * 119.99806 * 359.97438 * 9 8 6 11 11 C 1.38946 * 120.00244 * 179.97438 * 9 8 6 12 12 N 1.31415 * 119.99622 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 120.00373 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.46960 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47222 * 119.99627 * 13 11 9 16 16 H 1.48501 * 109.47127 * 239.99818 * 13 11 9 17 17 C 1.52994 * 109.47447 * 239.99633 * 2 1 3 18 18 H 1.09004 * 109.47247 * 300.00305 * 17 2 1 19 19 C 1.52999 * 109.47516 * 180.02562 * 17 2 1 20 20 N 1.46501 * 109.47267 * 60.00037 * 17 2 1 21 21 C 1.34771 * 120.00111 * 205.00186 * 20 17 2 22 22 O 1.21621 * 120.00102 * 359.97438 * 21 20 17 23 23 C 1.47100 * 120.00011 * 179.97438 * 21 20 17 24 24 C 1.31864 * 119.77889 * 180.13405 * 23 21 20 25 25 C 1.51409 * 120.08718 * 180.15915 * 24 23 21 26 26 C 1.53030 * 108.72587 * 71.39555 * 25 24 23 27 27 C 1.51784 * 110.80801 * 274.19771 * 26 25 24 28 28 C 1.51777 * 113.84468 * 66.94010 * 27 26 25 29 29 C 1.51407 * 119.85530 * 359.97438 * 23 21 20 30 30 H 1.09001 * 109.47228 * 300.00690 * 1 2 3 31 31 H 1.09005 * 109.47042 * 60.00609 * 1 2 3 32 32 H 1.09002 * 109.47644 * 180.02562 * 1 2 3 33 33 H 1.00905 * 110.99546 * 151.04480 * 4 2 1 34 34 H 1.08994 * 109.46865 * 300.00008 * 5 4 2 35 35 H 1.08997 * 109.46715 * 59.99949 * 5 4 2 36 36 H 0.96993 * 120.00317 * 359.97438 * 8 6 5 37 37 H 0.97007 * 119.99821 * 180.02562 * 12 11 9 38 38 H 1.09005 * 109.47420 * 59.99484 * 19 17 2 39 39 H 1.08998 * 109.47769 * 180.02562 * 19 17 2 40 40 H 1.09004 * 109.46700 * 300.00135 * 19 17 2 41 41 H 0.96995 * 119.99525 * 25.00063 * 20 17 2 42 42 H 1.08004 * 120.05881 * 359.89331 * 24 23 21 43 43 H 1.09002 * 109.61972 * 311.57531 * 25 24 23 44 44 H 1.08998 * 109.61982 * 191.21254 * 25 24 23 45 45 H 1.09005 * 109.21661 * 34.53623 * 26 25 24 46 46 H 1.09001 * 109.21303 * 153.90173 * 26 25 24 47 47 H 1.09005 * 108.61259 * 188.07111 * 27 26 25 48 48 H 1.09003 * 108.60640 * 305.95358 * 27 26 25 49 49 H 1.09000 * 109.20925 * 53.40219 * 28 27 26 50 50 H 1.09004 * 109.21068 * 172.76560 * 28 27 26 51 51 H 1.08997 * 109.61781 * 348.66871 * 29 23 21 52 52 H 1.08990 * 109.62146 * 228.11612 * 29 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0195 -0.6924 1.1996 5 6 2.0823 0.2228 2.3470 6 6 2.5883 -0.5213 3.5559 7 8 2.8685 -1.6982 3.4702 8 7 2.7284 0.1210 4.7324 9 6 3.1882 -0.5561 5.8324 10 1 3.4377 -1.6040 5.7561 11 6 3.3332 0.1061 7.0453 12 7 3.0300 1.3814 7.1380 13 14 3.9590 -0.8165 8.5442 14 1 4.2264 -2.2308 8.1789 15 1 5.2128 -0.1839 9.0270 16 1 2.9347 -0.7683 9.6184 17 6 2.0400 -0.7213 -1.2491 18 1 1.6766 -1.7490 -1.2491 19 6 3.5700 -0.7219 -1.2488 20 7 1.5517 -0.0308 -2.4454 21 6 1.4231 -0.7032 -3.6063 22 8 1.7127 -1.8831 -3.6609 23 6 0.9323 -0.0100 -4.8073 24 6 0.8055 -0.6728 -5.9402 25 6 0.3044 0.0347 -7.1815 26 6 1.3959 0.9843 -7.6801 27 6 1.3093 2.3244 -6.9726 28 6 1.6359 2.2586 -5.4919 29 6 0.5720 1.4589 -4.7354 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0276 0.0005 33 1 2.9172 -1.1205 1.0289 34 1 2.7587 1.0463 2.1182 35 1 1.0869 0.6165 2.5524 36 1 2.5039 1.0621 4.8010 37 1 3.1315 1.8438 7.9847 38 1 3.9330 -1.2358 -0.3587 39 1 3.9334 -1.2353 -2.1389 40 1 3.9336 0.3057 -1.2486 41 1 1.3210 0.9103 -2.4018 42 1 1.0631 -1.7206 -5.9856 43 1 -0.5938 0.6035 -6.9411 44 1 0.0769 -0.6994 -7.9544 45 1 2.3728 0.5402 -7.4886 46 1 1.2757 1.1374 -8.7526 47 1 2.0025 3.0160 -7.4514 48 1 0.2973 2.7131 -7.0866 49 1 2.6062 1.7800 -5.3595 50 1 1.6771 3.2704 -5.0884 51 1 0.5453 1.7786 -3.6937 52 1 -0.4029 1.6195 -5.1955 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485139527.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:00 Heat of formation + Delta-G solvation = -76.572324 kcal Electronic energy + Delta-G solvation = -29194.573012 eV Core-core repulsion = 25193.320468 eV Total energy + Delta-G solvation = -4001.252543 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.48757 -38.77730 -38.21464 -37.15844 -34.51033 -33.81674 -33.00336 -32.44022 -31.25366 -30.50228 -29.81524 -26.45892 -26.11676 -24.90017 -24.24562 -23.31787 -21.44807 -20.77367 -20.55262 -19.31754 -18.57458 -17.90960 -17.56545 -16.61596 -16.23956 -15.54153 -15.42169 -15.22419 -15.07415 -14.55480 -14.44591 -14.09905 -14.06389 -13.88248 -13.78407 -13.59681 -13.46393 -13.36800 -12.97473 -12.47642 -12.41389 -12.35020 -12.09906 -11.91018 -11.69110 -11.57475 -11.55680 -11.43218 -11.31143 -11.16414 -11.13163 -11.05757 -10.92868 -10.60196 -10.33865 -10.22208 -9.97579 -9.51839 -9.44164 -9.17548 -8.45427 -8.09785 -7.95868 -6.41707 -3.82398 1.14561 2.94572 3.10970 3.16726 3.27376 3.34989 3.90823 4.10100 4.17439 4.30917 4.37284 4.38197 4.49966 4.56547 4.62459 4.74941 4.86229 4.91220 5.02958 5.12363 5.16033 5.17706 5.25129 5.25372 5.31129 5.36054 5.39290 5.51597 5.60576 5.65344 5.65903 5.67866 5.68568 5.71818 5.78924 5.88464 5.91351 5.96866 5.97896 6.10914 6.15023 6.23169 6.23750 6.33733 6.38378 7.19469 7.35545 7.55818 7.64343 8.06832 8.08470 8.61360 9.18258 9.54391 10.05818 10.76103 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.031065 B = 0.001756 C = 0.001718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.113086 B =15942.865890 C =16291.138840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.078 3.922 3 H 0.046 0.954 4 N -0.661 5.661 5 C 0.051 3.949 6 C 0.441 3.559 7 O -0.582 6.582 8 N -0.564 5.564 9 C -0.298 4.298 10 H 0.104 0.896 11 C 0.021 3.979 12 N -0.902 5.902 13 Si 0.929 3.071 14 H -0.268 1.268 15 H -0.282 1.282 16 H -0.281 1.281 17 C 0.140 3.860 18 H 0.100 0.900 19 C -0.169 4.169 20 N -0.717 5.717 21 C 0.554 3.446 22 O -0.542 6.542 23 C -0.181 4.181 24 C -0.069 4.069 25 C -0.097 4.097 26 C -0.114 4.114 27 C -0.120 4.120 28 C -0.117 4.117 29 C -0.080 4.080 30 H 0.058 0.942 31 H 0.051 0.949 32 H 0.064 0.936 33 H 0.352 0.648 34 H 0.044 0.956 35 H 0.087 0.913 36 H 0.392 0.608 37 H 0.271 0.729 38 H 0.073 0.927 39 H 0.064 0.936 40 H 0.055 0.945 41 H 0.398 0.602 42 H 0.126 0.874 43 H 0.079 0.921 44 H 0.074 0.926 45 H 0.065 0.935 46 H 0.067 0.933 47 H 0.060 0.940 48 H 0.060 0.940 49 H 0.065 0.935 50 H 0.068 0.932 51 H 0.068 0.932 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.802 6.896 -28.977 30.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.033 4.033 3 H 0.064 0.936 4 N -0.297 5.297 5 C -0.081 4.081 6 C 0.226 3.774 7 O -0.466 6.466 8 N -0.201 5.201 9 C -0.428 4.428 10 H 0.122 0.878 11 C -0.180 4.180 12 N -0.544 5.544 13 Si 0.757 3.243 14 H -0.192 1.192 15 H -0.208 1.208 16 H -0.207 1.207 17 C 0.035 3.965 18 H 0.118 0.882 19 C -0.228 4.228 20 N -0.369 5.369 21 C 0.342 3.658 22 O -0.421 6.421 23 C -0.184 4.184 24 C -0.089 4.089 25 C -0.134 4.134 26 C -0.152 4.152 27 C -0.157 4.157 28 C -0.154 4.154 29 C -0.118 4.118 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.174 0.826 34 H 0.062 0.938 35 H 0.105 0.895 36 H 0.225 0.775 37 H 0.080 0.920 38 H 0.092 0.908 39 H 0.083 0.917 40 H 0.074 0.926 41 H 0.234 0.766 42 H 0.144 0.856 43 H 0.097 0.903 44 H 0.093 0.907 45 H 0.084 0.916 46 H 0.086 0.914 47 H 0.079 0.921 48 H 0.079 0.921 49 H 0.083 0.917 50 H 0.086 0.914 51 H 0.086 0.914 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -5.983 5.134 -28.699 29.762 hybrid contribution 0.837 1.274 0.800 1.721 sum -5.147 6.408 -27.899 29.084 Atomic orbital electron populations 1.21804 0.94171 1.02820 1.00941 1.21731 0.96528 0.95796 0.89234 0.93648 1.60178 1.35364 1.31847 1.02275 1.21724 1.01333 0.93843 0.91222 1.19794 0.84942 0.88206 0.84435 1.90531 1.55203 1.16098 1.84731 1.41864 1.57823 1.12437 1.07964 1.19765 1.39758 0.96478 0.86779 0.87838 1.25262 0.97696 0.95792 0.99241 1.69625 1.48812 1.08849 1.27079 0.85798 0.78204 0.79649 0.80693 1.19203 1.20787 1.20748 1.21078 0.93931 0.98290 0.83157 0.88248 1.22254 0.95241 1.02155 1.03145 1.45972 1.67348 1.13977 1.09605 1.18387 0.77504 0.86486 0.83402 1.90804 1.50521 1.15685 1.85075 1.21287 1.06314 0.96646 0.94138 1.23433 0.92428 0.99939 0.93098 1.20968 0.98700 0.98491 0.95282 1.21261 0.99098 0.95153 0.99674 1.21143 1.01976 0.97204 0.95379 1.21321 0.98996 1.00047 0.95052 1.20778 0.99542 0.90613 1.00836 0.92287 0.92989 0.91706 0.82565 0.93845 0.89525 0.77484 0.91952 0.90798 0.91714 0.92558 0.76583 0.85588 0.90288 0.90715 0.91628 0.91414 0.92088 0.92089 0.91665 0.91361 0.91361 0.90192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 9.26 37.15 0.34 -1.26 16 2 C 0.08 0.95 2.28 -67.72 -0.15 0.79 16 3 H 0.05 0.50 7.80 -51.93 -0.40 0.10 16 4 N -0.66 -10.66 5.93 -107.99 -0.64 -11.30 16 5 C 0.05 0.90 5.97 -4.97 -0.03 0.87 16 6 C 0.44 10.44 7.82 -10.99 -0.09 10.35 16 7 O -0.58 -15.92 15.78 5.55 0.09 -15.84 16 8 N -0.56 -14.31 5.29 -10.96 -0.06 -14.37 16 9 C -0.30 -8.36 9.68 -14.93 -0.14 -8.50 16 10 H 0.10 3.05 7.16 -52.49 -0.38 2.68 16 11 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 12 N -0.90 -24.54 13.05 55.50 0.72 -23.82 16 13 Si 0.93 21.14 29.55 -169.99 -5.02 16.12 16 14 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 15 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 16 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 17 C 0.14 1.67 2.29 -67.93 -0.16 1.51 16 18 H 0.10 1.44 7.58 -51.93 -0.39 1.05 16 19 C -0.17 -1.99 9.25 37.16 0.34 -1.65 16 20 N -0.72 -7.07 4.34 -54.99 -0.24 -7.31 16 21 C 0.55 6.40 7.71 -12.67 -0.10 6.30 16 22 O -0.54 -8.44 15.85 5.26 0.08 -8.36 16 23 C -0.18 -1.53 5.11 -102.58 -0.52 -2.06 16 24 C -0.07 -0.55 8.95 -35.86 -0.32 -0.87 16 25 C -0.10 -0.51 5.61 -27.52 -0.15 -0.67 16 26 C -0.11 -0.56 5.66 -27.33 -0.15 -0.71 16 27 C -0.12 -0.55 5.27 -27.97 -0.15 -0.70 16 28 C -0.12 -0.62 5.66 -27.30 -0.15 -0.77 16 29 C -0.08 -0.47 5.37 -27.49 -0.15 -0.61 16 30 H 0.06 0.70 7.45 -51.93 -0.39 0.31 16 31 H 0.05 0.48 7.45 -51.93 -0.39 0.09 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.35 5.90 5.86 -39.29 -0.23 5.67 16 34 H 0.04 0.68 8.05 -51.93 -0.42 0.26 16 35 H 0.09 1.40 7.43 -51.93 -0.39 1.02 16 36 H 0.39 9.47 7.90 -40.82 -0.32 9.15 16 37 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 38 H 0.07 0.92 6.21 -51.93 -0.32 0.60 16 39 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.40 2.96 6.17 -40.82 -0.25 2.71 16 42 H 0.13 1.17 7.45 -52.48 -0.39 0.78 16 43 H 0.08 0.37 6.74 -51.93 -0.35 0.02 16 44 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.06 0.39 7.86 -51.93 -0.41 -0.02 16 46 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 47 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 48 H 0.06 0.25 7.87 -51.93 -0.41 -0.16 16 49 H 0.06 0.42 7.85 -51.93 -0.41 0.02 16 50 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 51 H 0.07 0.34 5.99 -51.93 -0.31 0.03 16 52 H 0.08 0.40 6.74 -51.93 -0.35 0.05 16 LS Contribution 407.37 15.07 6.14 6.14 Total: -1.00 -33.15 407.37 -9.21 -42.35 By element: Atomic # 1 Polarization: 22.49 SS G_CDS: -8.60 Total: 13.89 kcal Atomic # 6 Polarization: 4.19 SS G_CDS: -1.68 Total: 2.51 kcal Atomic # 7 Polarization: -56.59 SS G_CDS: -0.21 Total: -56.80 kcal Atomic # 8 Polarization: -24.37 SS G_CDS: 0.17 Total: -24.20 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -33.15 -9.21 -42.35 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485139527.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.220 kcal (2) G-P(sol) polarization free energy of solvation -33.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds