Wall clock time and date at job start Tue Mar 31 2020 20:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09002 * 109.47759 * 2 1 4 4 N 1.46501 * 109.47036 * 120.00124 * 2 1 3 5 5 C 1.34774 * 120.00070 * 274.99776 * 4 2 1 6 6 O 1.21611 * 120.00064 * 359.97438 * 5 4 2 7 7 C 1.47097 * 120.00272 * 180.02562 * 5 4 2 8 8 C 1.31561 * 119.85556 * 179.97438 * 7 5 4 9 9 C 1.51412 * 120.29518 * 180.02562 * 8 7 5 10 10 C 1.53039 * 108.57137 * 288.41684 * 9 8 7 11 11 C 1.51779 * 110.81177 * 85.71265 * 10 9 8 12 12 C 1.51782 * 113.84160 * 293.05714 * 11 10 9 13 13 C 1.51455 * 119.88693 * 0.04060 * 7 5 4 14 14 C 1.53003 * 109.47285 * 239.99723 * 2 1 3 15 15 H 1.09002 * 109.46948 * 300.00773 * 14 2 1 16 16 C 1.52993 * 109.47285 * 179.97438 * 14 2 1 17 17 N 1.46904 * 109.46857 * 60.00316 * 14 2 1 18 18 C 1.46897 * 111.00146 * 205.00167 * 17 14 2 19 19 C 1.50693 * 109.47263 * 179.97438 * 18 17 14 20 20 O 1.21297 * 120.00336 * 0.02562 * 19 18 17 21 21 N 1.34777 * 120.00086 * 179.97438 * 19 18 17 22 22 C 1.37098 * 120.00316 * 179.97438 * 21 19 18 23 23 H 1.07997 * 119.99589 * 0.02562 * 22 21 19 24 24 C 1.38947 * 120.00029 * 179.97438 * 22 21 19 25 25 N 1.31406 * 120.00514 * 0.02562 * 24 22 21 26 26 Si 1.86807 * 119.99799 * 180.02562 * 24 22 21 27 27 H 1.48502 * 109.47252 * 0.02562 * 26 24 22 28 28 H 1.48494 * 109.47121 * 120.00154 * 26 24 22 29 29 H 1.48498 * 109.47081 * 240.00197 * 26 24 22 30 30 H 1.09008 * 109.46867 * 300.00151 * 1 2 3 31 31 H 1.09005 * 109.47283 * 59.99709 * 1 2 3 32 32 H 1.09000 * 109.47263 * 180.02562 * 1 2 3 33 33 H 0.96999 * 120.00330 * 94.99950 * 4 2 1 34 34 H 1.08003 * 119.85222 * 0.04575 * 8 7 5 35 35 H 1.08998 * 109.62319 * 168.68679 * 9 8 7 36 36 H 1.09010 * 109.76974 * 48.22636 * 9 8 7 37 37 H 1.09000 * 109.20835 * 325.36465 * 10 9 8 38 38 H 1.08997 * 109.20684 * 206.05167 * 10 9 8 39 39 H 1.08997 * 108.61113 * 171.93101 * 11 10 9 40 40 H 1.09000 * 108.60928 * 54.18297 * 11 10 9 41 41 H 1.09002 * 109.21025 * 187.28294 * 12 11 10 42 42 H 1.08999 * 109.20670 * 306.64469 * 12 11 10 43 43 H 1.09005 * 109.66265 * 131.87083 * 13 7 5 44 44 H 1.09000 * 109.60208 * 11.30890 * 13 7 5 45 45 H 1.09005 * 109.47283 * 60.00568 * 16 14 2 46 46 H 1.09008 * 109.46867 * 180.02562 * 16 14 2 47 47 H 1.09002 * 109.47759 * 300.00277 * 16 14 2 48 48 H 1.00903 * 110.99846 * 328.95515 * 17 14 2 49 49 H 1.09004 * 109.47165 * 300.00078 * 18 17 14 50 50 H 1.09010 * 109.46889 * 59.99838 * 18 17 14 51 51 H 0.97004 * 120.00024 * 0.02562 * 21 19 18 52 52 H 0.97001 * 120.00567 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0182 -0.6906 1.1962 5 6 2.1470 -0.0183 2.3571 6 8 1.8583 1.1618 2.4117 7 6 2.6378 -0.7116 3.5581 8 6 2.7629 -0.0524 4.6897 9 6 3.2677 -0.7560 5.9317 10 6 2.1766 -1.7057 6.4314 11 6 2.2628 -3.0458 5.7240 12 6 1.9350 -2.9803 4.2434 13 6 2.9987 -2.1808 3.4868 14 6 2.0400 -0.7213 -1.2492 15 1 1.6765 -1.7490 -1.2492 16 6 3.5699 -0.7208 -1.2495 17 7 1.5504 -0.0288 -2.4487 18 6 1.4875 -0.9438 -3.5961 19 6 0.9815 -0.1997 -4.8049 20 8 0.7013 0.9773 -4.7192 21 7 0.8414 -0.8418 -5.9816 22 6 0.3805 -0.1650 -7.0812 23 1 0.1302 0.8828 -7.0046 24 6 0.2366 -0.8269 -8.2944 25 7 0.5416 -2.1016 -8.3878 26 14 -0.3907 0.0956 -9.7929 27 1 -0.6602 1.5093 -9.4270 28 1 0.6335 0.0495 -10.8671 29 1 -1.6435 -0.5386 -10.2760 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 2.2489 -1.6318 1.1526 34 1 2.5040 0.9953 4.7330 35 1 3.4936 -0.0198 6.7032 36 1 4.1669 -1.3244 5.6938 37 1 1.1997 -1.2616 6.2406 38 1 2.2973 -1.8580 7.5039 39 1 1.5700 -3.7374 6.2033 40 1 3.2742 -3.4356 5.8393 41 1 1.8926 -3.9922 3.8403 42 1 0.9649 -2.5010 4.1119 43 1 3.9737 -2.3418 3.9469 44 1 3.0252 -2.5007 2.4452 45 1 3.9337 -1.2344 -0.3596 46 1 3.9332 -1.2343 -2.1398 47 1 3.9330 0.3070 -1.2498 48 1 0.6527 0.3993 -2.2780 49 1 2.4829 -1.3376 -3.8018 50 1 0.8110 -1.7674 -3.3674 51 1 1.0658 -1.7830 -6.0503 52 1 0.4407 -2.5638 -9.2347 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485139528.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:03 Heat of formation + Delta-G solvation = -76.412994 kcal Electronic energy + Delta-G solvation = -29195.094663 eV Core-core repulsion = 25193.849028 eV Total energy + Delta-G solvation = -4001.245634 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.49643 -38.78263 -38.21682 -37.15960 -34.51159 -33.81637 -33.01740 -32.43992 -31.25421 -30.50409 -29.81498 -26.45995 -26.12481 -24.89645 -24.24516 -23.31814 -21.45029 -20.77653 -20.55343 -19.31726 -18.57420 -17.90916 -17.56673 -16.61594 -16.24066 -15.54050 -15.42155 -15.22749 -15.07673 -14.55576 -14.44637 -14.09817 -14.06317 -13.88215 -13.78541 -13.59640 -13.46609 -13.36810 -12.97477 -12.47693 -12.41204 -12.35009 -12.10027 -11.90953 -11.69149 -11.57531 -11.55614 -11.43212 -11.31168 -11.16505 -11.13088 -11.05761 -10.92599 -10.60193 -10.33863 -10.22243 -9.97779 -9.51859 -9.45218 -9.17937 -8.45406 -8.09783 -7.95915 -6.41691 -3.82385 1.15457 2.94425 3.11098 3.16723 3.27386 3.34980 3.90788 4.10059 4.17372 4.30774 4.37140 4.38201 4.50002 4.56450 4.62518 4.74998 4.86252 4.91259 5.02912 5.12337 5.16036 5.17753 5.25285 5.25412 5.31062 5.36087 5.39308 5.51579 5.60617 5.65301 5.65950 5.67893 5.68565 5.71876 5.78883 5.88483 5.91407 5.96834 5.97872 6.10916 6.14976 6.23201 6.24255 6.33740 6.38402 7.19468 7.35439 7.55786 7.64344 8.06813 8.08345 8.61372 9.18265 9.54384 10.05825 10.76120 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.031073 B = 0.001756 C = 0.001718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.876783 B =15943.509649 C =16291.634531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.140 3.860 3 H 0.100 0.900 4 N -0.717 5.717 5 C 0.554 3.446 6 O -0.542 6.542 7 C -0.180 4.180 8 C -0.070 4.070 9 C -0.097 4.097 10 C -0.115 4.115 11 C -0.119 4.119 12 C -0.117 4.117 13 C -0.081 4.081 14 C 0.078 3.922 15 H 0.046 0.954 16 C -0.139 4.139 17 N -0.661 5.661 18 C 0.051 3.949 19 C 0.441 3.559 20 O -0.582 6.582 21 N -0.564 5.564 22 C -0.298 4.298 23 H 0.104 0.896 24 C 0.022 3.978 25 N -0.902 5.902 26 Si 0.929 3.071 27 H -0.268 1.268 28 H -0.281 1.281 29 H -0.282 1.282 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.055 0.945 33 H 0.398 0.602 34 H 0.126 0.874 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.065 0.935 38 H 0.067 0.933 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.068 0.932 42 H 0.065 0.935 43 H 0.080 0.920 44 H 0.068 0.932 45 H 0.051 0.949 46 H 0.058 0.942 47 H 0.064 0.936 48 H 0.352 0.648 49 H 0.087 0.913 50 H 0.044 0.956 51 H 0.392 0.608 52 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.800 -6.903 28.972 30.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.035 3.965 3 H 0.118 0.882 4 N -0.369 5.369 5 C 0.342 3.658 6 O -0.421 6.421 7 C -0.183 4.183 8 C -0.089 4.089 9 C -0.134 4.134 10 C -0.152 4.152 11 C -0.157 4.157 12 C -0.154 4.154 13 C -0.118 4.118 14 C -0.033 4.033 15 H 0.064 0.936 16 C -0.197 4.197 17 N -0.297 5.297 18 C -0.081 4.081 19 C 0.226 3.774 20 O -0.466 6.466 21 N -0.201 5.201 22 C -0.428 4.428 23 H 0.122 0.878 24 C -0.180 4.180 25 N -0.544 5.544 26 Si 0.756 3.244 27 H -0.192 1.192 28 H -0.207 1.207 29 H -0.208 1.208 30 H 0.083 0.917 31 H 0.092 0.908 32 H 0.074 0.926 33 H 0.234 0.766 34 H 0.144 0.856 35 H 0.093 0.907 36 H 0.097 0.903 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.086 0.914 42 H 0.083 0.917 43 H 0.098 0.902 44 H 0.086 0.914 45 H 0.070 0.930 46 H 0.077 0.923 47 H 0.083 0.917 48 H 0.174 0.826 49 H 0.105 0.895 50 H 0.062 0.938 51 H 0.225 0.775 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.983 -5.139 28.693 29.757 hybrid contribution -0.839 -1.274 -0.799 1.722 sum 5.144 -6.414 27.894 29.080 Atomic orbital electron populations 1.22255 0.95241 1.02154 1.03149 1.21081 0.93928 0.98289 0.83157 0.88243 1.45974 1.67347 1.13979 1.09602 1.18380 0.77494 0.86486 0.83405 1.90801 1.50531 1.15669 1.85070 1.21213 1.06298 0.96680 0.94151 1.23347 0.92474 0.99977 0.93130 1.20968 0.98678 0.98501 0.95256 1.21262 0.99108 0.95160 0.99672 1.21138 1.01986 0.97193 0.95384 1.21317 0.98994 1.00052 0.95044 1.20790 0.99545 0.90625 1.00834 1.21734 0.96528 0.95795 0.89233 0.93643 1.21805 0.94167 1.02823 1.00940 1.60177 1.35364 1.31846 1.02275 1.21724 1.01332 0.93843 0.91219 1.19796 0.84947 0.88209 0.84434 1.90534 1.55212 1.16093 1.84735 1.41865 1.57798 1.12444 1.07974 1.19764 1.39729 0.96510 0.86783 0.87837 1.25259 0.97694 0.95790 0.99233 1.69617 1.48785 1.08891 1.27070 0.85800 0.78207 0.79651 0.80697 1.19201 1.20750 1.20787 0.91718 0.90797 0.92551 0.76581 0.85639 0.90708 0.90272 0.91635 0.91422 0.92107 0.92088 0.91355 0.91664 0.90188 0.91374 0.92989 0.92284 0.91707 0.82567 0.89525 0.93846 0.77484 0.91945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.99 9.25 37.15 0.34 -1.65 16 2 C 0.14 1.67 2.29 -67.93 -0.16 1.51 16 3 H 0.10 1.44 7.58 -51.93 -0.39 1.05 16 4 N -0.72 -7.07 4.34 -54.99 -0.24 -7.31 16 5 C 0.55 6.40 7.71 -12.67 -0.10 6.30 16 6 O -0.54 -8.44 15.84 5.27 0.08 -8.36 16 7 C -0.18 -1.53 5.10 -102.51 -0.52 -2.05 16 8 C -0.07 -0.55 8.92 -35.81 -0.32 -0.87 16 9 C -0.10 -0.51 5.62 -27.51 -0.15 -0.67 16 10 C -0.11 -0.56 5.66 -27.33 -0.15 -0.71 16 11 C -0.12 -0.55 5.27 -27.97 -0.15 -0.70 16 12 C -0.12 -0.62 5.66 -27.31 -0.15 -0.77 16 13 C -0.08 -0.47 5.38 -27.47 -0.15 -0.61 16 14 C 0.08 0.95 2.28 -67.71 -0.15 0.79 16 15 H 0.05 0.50 7.80 -51.93 -0.40 0.10 16 16 C -0.14 -1.60 9.26 37.15 0.34 -1.26 16 17 N -0.66 -10.66 5.93 -107.99 -0.64 -11.30 16 18 C 0.05 0.90 5.96 -4.98 -0.03 0.87 16 19 C 0.44 10.43 7.82 -10.99 -0.09 10.35 16 20 O -0.58 -15.93 15.78 5.54 0.09 -15.84 16 21 N -0.56 -14.31 5.29 -10.97 -0.06 -14.37 16 22 C -0.30 -8.36 9.68 -14.93 -0.14 -8.50 16 23 H 0.10 3.05 7.16 -52.49 -0.38 2.68 16 24 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 25 N -0.90 -24.54 13.05 55.50 0.72 -23.81 16 26 Si 0.93 21.14 29.55 -169.99 -5.02 16.11 16 27 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 28 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 29 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 30 H 0.06 0.81 8.14 -51.92 -0.42 0.38 16 31 H 0.07 0.92 6.21 -51.93 -0.32 0.60 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.40 2.96 6.17 -40.82 -0.25 2.70 16 34 H 0.13 1.17 7.44 -52.48 -0.39 0.78 16 35 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.08 0.37 6.75 -51.92 -0.35 0.02 16 37 H 0.06 0.39 7.85 -51.93 -0.41 -0.02 16 38 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 39 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 40 H 0.06 0.25 7.88 -51.93 -0.41 -0.16 16 41 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.06 0.42 7.85 -51.93 -0.41 0.02 16 43 H 0.08 0.40 6.74 -51.93 -0.35 0.05 16 44 H 0.07 0.34 5.99 -51.93 -0.31 0.03 16 45 H 0.05 0.48 7.45 -51.93 -0.39 0.09 16 46 H 0.06 0.70 7.45 -51.92 -0.39 0.31 16 47 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 48 H 0.35 5.90 5.86 -39.29 -0.23 5.67 16 49 H 0.09 1.40 7.43 -51.93 -0.39 1.01 16 50 H 0.04 0.68 8.06 -51.92 -0.42 0.26 16 51 H 0.39 9.47 7.90 -40.82 -0.32 9.14 16 52 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 407.35 15.07 6.14 6.14 Total: -1.00 -33.14 407.35 -9.21 -42.35 By element: Atomic # 1 Polarization: 22.48 SS G_CDS: -8.60 Total: 13.88 kcal Atomic # 6 Polarization: 4.19 SS G_CDS: -1.68 Total: 2.51 kcal Atomic # 7 Polarization: -56.58 SS G_CDS: -0.21 Total: -56.79 kcal Atomic # 8 Polarization: -24.37 SS G_CDS: 0.17 Total: -24.20 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -33.14 -9.21 -42.35 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485139528.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.067 kcal (2) G-P(sol) polarization free energy of solvation -33.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds