Wall clock time and date at job start Tue Mar 31 2020 20:32:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09002 * 109.47759 * 2 1 4 4 N 1.46501 * 109.47036 * 120.00124 * 2 1 3 5 5 C 1.34774 * 120.00070 * 274.99776 * 4 2 1 6 6 O 1.21611 * 120.00064 * 359.97438 * 5 4 2 7 7 C 1.47097 * 120.00272 * 180.02562 * 5 4 2 8 8 C 1.31561 * 119.85556 * 179.97438 * 7 5 4 9 9 C 1.51412 * 120.29518 * 180.02562 * 8 7 5 10 10 C 1.53039 * 108.57137 * 288.41684 * 9 8 7 11 11 C 1.51779 * 110.81177 * 85.71265 * 10 9 8 12 12 C 1.51782 * 113.84160 * 293.05714 * 11 10 9 13 13 C 1.51455 * 119.88693 * 0.04060 * 7 5 4 14 14 C 1.53003 * 109.47285 * 239.99723 * 2 1 3 15 15 H 1.09002 * 109.46948 * 300.00773 * 14 2 1 16 16 C 1.52993 * 109.47285 * 179.97438 * 14 2 1 17 17 N 1.46904 * 109.46857 * 60.00316 * 14 2 1 18 18 C 1.46897 * 111.00146 * 205.00167 * 17 14 2 19 19 C 1.50693 * 109.47263 * 179.97438 * 18 17 14 20 20 O 1.21297 * 120.00336 * 0.02562 * 19 18 17 21 21 N 1.34777 * 120.00086 * 179.97438 * 19 18 17 22 22 C 1.37098 * 120.00316 * 179.97438 * 21 19 18 23 23 H 1.07997 * 119.99589 * 0.02562 * 22 21 19 24 24 C 1.38947 * 120.00029 * 179.97438 * 22 21 19 25 25 N 1.31406 * 120.00514 * 0.02562 * 24 22 21 26 26 Si 1.86807 * 119.99799 * 180.02562 * 24 22 21 27 27 H 1.48502 * 109.47252 * 0.02562 * 26 24 22 28 28 H 1.48494 * 109.47121 * 120.00154 * 26 24 22 29 29 H 1.48498 * 109.47081 * 240.00197 * 26 24 22 30 30 H 1.09008 * 109.46867 * 300.00151 * 1 2 3 31 31 H 1.09005 * 109.47283 * 59.99709 * 1 2 3 32 32 H 1.09000 * 109.47263 * 180.02562 * 1 2 3 33 33 H 0.96999 * 120.00330 * 94.99950 * 4 2 1 34 34 H 1.08003 * 119.85222 * 0.04575 * 8 7 5 35 35 H 1.08998 * 109.62319 * 168.68679 * 9 8 7 36 36 H 1.09010 * 109.76974 * 48.22636 * 9 8 7 37 37 H 1.09000 * 109.20835 * 325.36465 * 10 9 8 38 38 H 1.08997 * 109.20684 * 206.05167 * 10 9 8 39 39 H 1.08997 * 108.61113 * 171.93101 * 11 10 9 40 40 H 1.09000 * 108.60928 * 54.18297 * 11 10 9 41 41 H 1.09002 * 109.21025 * 187.28294 * 12 11 10 42 42 H 1.08999 * 109.20670 * 306.64469 * 12 11 10 43 43 H 1.09005 * 109.66265 * 131.87083 * 13 7 5 44 44 H 1.09000 * 109.60208 * 11.30890 * 13 7 5 45 45 H 1.09005 * 109.47283 * 60.00568 * 16 14 2 46 46 H 1.09008 * 109.46867 * 180.02562 * 16 14 2 47 47 H 1.09002 * 109.47759 * 300.00277 * 16 14 2 48 48 H 1.00903 * 110.99846 * 328.95515 * 17 14 2 49 49 H 1.09004 * 109.47165 * 300.00078 * 18 17 14 50 50 H 1.09010 * 109.46889 * 59.99838 * 18 17 14 51 51 H 0.97004 * 120.00024 * 0.02562 * 21 19 18 52 52 H 0.97001 * 120.00567 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0182 -0.6906 1.1962 5 6 2.1470 -0.0183 2.3571 6 8 1.8583 1.1618 2.4117 7 6 2.6378 -0.7116 3.5581 8 6 2.7629 -0.0524 4.6897 9 6 3.2677 -0.7560 5.9317 10 6 2.1766 -1.7057 6.4314 11 6 2.2628 -3.0458 5.7240 12 6 1.9350 -2.9803 4.2434 13 6 2.9987 -2.1808 3.4868 14 6 2.0400 -0.7213 -1.2492 15 1 1.6765 -1.7490 -1.2492 16 6 3.5699 -0.7208 -1.2495 17 7 1.5504 -0.0288 -2.4487 18 6 1.4875 -0.9438 -3.5961 19 6 0.9815 -0.1997 -4.8049 20 8 0.7013 0.9773 -4.7192 21 7 0.8414 -0.8418 -5.9816 22 6 0.3805 -0.1650 -7.0812 23 1 0.1302 0.8828 -7.0046 24 6 0.2366 -0.8269 -8.2944 25 7 0.5416 -2.1016 -8.3878 26 14 -0.3907 0.0956 -9.7929 27 1 -0.6602 1.5093 -9.4270 28 1 0.6335 0.0495 -10.8671 29 1 -1.6435 -0.5386 -10.2760 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 2.2489 -1.6318 1.1526 34 1 2.5040 0.9953 4.7330 35 1 3.4936 -0.0198 6.7032 36 1 4.1669 -1.3244 5.6938 37 1 1.1997 -1.2616 6.2406 38 1 2.2973 -1.8580 7.5039 39 1 1.5700 -3.7374 6.2033 40 1 3.2742 -3.4356 5.8393 41 1 1.8926 -3.9922 3.8403 42 1 0.9649 -2.5010 4.1119 43 1 3.9737 -2.3418 3.9469 44 1 3.0252 -2.5007 2.4452 45 1 3.9337 -1.2344 -0.3596 46 1 3.9332 -1.2343 -2.1398 47 1 3.9330 0.3070 -1.2498 48 1 0.6527 0.3993 -2.2780 49 1 2.4829 -1.3376 -3.8018 50 1 0.8110 -1.7674 -3.3674 51 1 1.0658 -1.7830 -6.0503 52 1 0.4407 -2.5638 -9.2347 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485139528.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:02 Heat of formation + Delta-G solvation = -99.482080 kcal Electronic energy + Delta-G solvation = -29196.095013 eV Core-core repulsion = 25193.849028 eV Total energy + Delta-G solvation = -4002.245985 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.35794 -40.23728 -39.18981 -38.29691 -36.06417 -35.40440 -33.63404 -33.27802 -32.93982 -31.57447 -30.80064 -28.06101 -26.69842 -25.92944 -25.49738 -24.23289 -22.28408 -21.55827 -21.21030 -21.09557 -19.94099 -19.40588 -18.25359 -17.73174 -17.57861 -17.00749 -16.44255 -16.23126 -16.05311 -15.80093 -15.72401 -15.40346 -15.13083 -14.90831 -14.69748 -14.46729 -14.22761 -14.18479 -14.00818 -13.83222 -13.53806 -13.48810 -13.15649 -12.91754 -12.91029 -12.69951 -12.65433 -12.53610 -12.40860 -12.35235 -12.12112 -12.06095 -11.64636 -11.59346 -11.51719 -11.50925 -11.31046 -10.87227 -10.34924 -10.26511 -10.01582 -9.91231 -9.36869 -8.47177 -5.95627 0.43781 1.36248 1.41814 1.55813 2.03712 2.06014 2.27454 2.30273 2.96829 3.20192 3.49092 3.53482 3.68731 3.76058 3.93535 4.00283 4.10335 4.13412 4.15173 4.24247 4.30281 4.39814 4.45563 4.48814 4.54457 4.58936 4.60107 4.68734 4.76069 4.82653 4.84154 4.88998 4.95211 4.97762 4.98715 5.15522 5.25267 5.29162 5.29894 5.34217 5.37203 5.39859 5.41657 5.52993 5.56745 5.67093 5.89130 6.09907 6.35521 6.54311 6.60116 7.12714 7.22283 7.56045 8.11785 8.70343 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.031073 B = 0.001756 C = 0.001718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.876783 B =15943.509649 C =16291.634531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.148 3.852 3 H 0.068 0.932 4 N -0.701 5.701 5 C 0.548 3.452 6 O -0.592 6.592 7 C -0.188 4.188 8 C -0.068 4.068 9 C -0.091 4.091 10 C -0.113 4.113 11 C -0.120 4.120 12 C -0.115 4.115 13 C -0.075 4.075 14 C 0.084 3.916 15 H 0.073 0.927 16 C -0.137 4.137 17 N -0.680 5.680 18 C 0.067 3.933 19 C 0.436 3.564 20 O -0.625 6.625 21 N -0.572 5.572 22 C -0.334 4.334 23 H 0.077 0.923 24 C -0.012 4.012 25 N -0.919 5.919 26 Si 0.992 3.008 27 H -0.275 1.275 28 H -0.271 1.271 29 H -0.270 1.270 30 H 0.051 0.949 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.414 0.586 34 H 0.103 0.897 35 H 0.083 0.917 36 H 0.093 0.907 37 H 0.049 0.951 38 H 0.081 0.919 39 H 0.064 0.936 40 H 0.073 0.927 41 H 0.081 0.919 42 H 0.048 0.952 43 H 0.095 0.905 44 H 0.078 0.922 45 H 0.079 0.921 46 H 0.060 0.940 47 H 0.042 0.958 48 H 0.345 0.655 49 H 0.106 0.894 50 H 0.072 0.928 51 H 0.397 0.603 52 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.694 -9.644 29.898 32.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.042 3.958 3 H 0.086 0.914 4 N -0.354 5.354 5 C 0.338 3.662 6 O -0.474 6.474 7 C -0.191 4.191 8 C -0.088 4.088 9 C -0.128 4.128 10 C -0.151 4.151 11 C -0.157 4.157 12 C -0.153 4.153 13 C -0.113 4.113 14 C -0.026 4.026 15 H 0.091 0.909 16 C -0.195 4.195 17 N -0.316 5.316 18 C -0.065 4.065 19 C 0.224 3.776 20 O -0.511 6.511 21 N -0.209 5.209 22 C -0.464 4.464 23 H 0.095 0.905 24 C -0.212 4.212 25 N -0.560 5.560 26 Si 0.816 3.184 27 H -0.200 1.200 28 H -0.196 1.196 29 H -0.195 1.195 30 H 0.070 0.930 31 H 0.081 0.919 32 H 0.093 0.907 33 H 0.253 0.747 34 H 0.121 0.879 35 H 0.101 0.899 36 H 0.112 0.888 37 H 0.068 0.932 38 H 0.099 0.901 39 H 0.083 0.917 40 H 0.092 0.908 41 H 0.100 0.900 42 H 0.067 0.933 43 H 0.113 0.887 44 H 0.097 0.903 45 H 0.097 0.903 46 H 0.079 0.921 47 H 0.062 0.938 48 H 0.167 0.833 49 H 0.124 0.876 50 H 0.090 0.910 51 H 0.231 0.769 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.900 -7.954 29.628 31.443 hybrid contribution -1.115 -0.373 -1.017 1.555 sum 5.784 -8.327 28.610 30.354 Atomic orbital electron populations 1.22186 0.95107 1.02961 1.01986 1.20823 0.93946 0.96980 0.84028 0.91426 1.45786 1.66565 1.14530 1.08516 1.18968 0.76715 0.86031 0.84485 1.90779 1.52819 1.17966 1.85857 1.21256 1.06880 0.98210 0.92704 1.23508 0.91767 0.99197 0.94372 1.21010 0.99146 0.98726 0.93948 1.21264 0.98043 0.95193 1.00592 1.21152 1.02842 0.96925 0.94825 1.21317 0.97914 1.00410 0.95636 1.20844 1.00313 0.88282 1.01818 1.21761 0.96879 0.96546 0.87367 0.90946 1.21809 0.93459 1.01902 1.02351 1.60168 1.35275 1.32626 1.03500 1.21585 1.02548 0.93620 0.88764 1.20905 0.83220 0.87976 0.85498 1.90504 1.56676 1.18332 1.85625 1.41916 1.58236 1.12616 1.08155 1.19693 1.42065 0.95960 0.88641 0.90478 1.26011 0.97240 0.96636 1.01281 1.69665 1.48580 1.09628 1.28091 0.84886 0.78211 0.77991 0.77334 1.19997 1.19593 1.19497 0.92990 0.91858 0.90654 0.74702 0.87900 0.89872 0.88842 0.93167 0.90058 0.91701 0.90838 0.90011 0.93321 0.88720 0.90344 0.90264 0.92138 0.93841 0.83266 0.87560 0.91010 0.76869 0.91275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.85 9.25 71.98 0.67 -3.18 16 2 C 0.15 3.48 2.29 44.99 0.10 3.58 16 3 H 0.07 2.06 7.58 -2.39 -0.02 2.04 16 4 N -0.70 -13.06 4.34 -446.15 -1.94 -15.00 16 5 C 0.55 12.72 7.71 86.57 0.67 13.39 16 6 O -0.59 -19.46 15.84 -4.07 -0.06 -19.52 16 7 C -0.19 -3.02 5.10 -17.87 -0.09 -3.11 16 8 C -0.07 -1.07 8.92 25.34 0.23 -0.84 16 9 C -0.09 -0.80 5.62 30.09 0.17 -0.63 16 10 C -0.11 -0.90 5.66 30.21 0.17 -0.73 16 11 C -0.12 -0.78 5.27 29.79 0.16 -0.63 16 12 C -0.12 -0.93 5.66 30.22 0.17 -0.76 16 13 C -0.08 -0.67 5.38 30.11 0.16 -0.51 16 14 C 0.08 1.90 2.28 44.91 0.10 2.00 16 15 H 0.07 1.31 7.80 -2.39 -0.02 1.29 16 16 C -0.14 -2.90 9.26 71.98 0.67 -2.23 16 17 N -0.68 -21.49 5.93 -495.57 -2.94 -24.43 16 18 C 0.07 2.24 5.96 85.56 0.51 2.75 16 19 C 0.44 20.81 7.82 87.65 0.69 21.50 16 20 O -0.62 -35.22 15.78 -3.08 -0.05 -35.27 16 21 N -0.57 -29.29 5.29 -306.99 -1.62 -30.91 16 22 C -0.33 -19.09 9.68 84.04 0.81 -18.28 16 23 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 24 C -0.01 -0.63 5.50 84.93 0.47 -0.17 16 25 N -0.92 -49.29 13.05 21.66 0.28 -49.00 16 26 Si 0.99 43.15 29.55 68.60 2.03 45.18 16 27 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 28 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 29 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 30 H 0.05 1.34 8.14 -2.38 -0.02 1.32 16 31 H 0.06 1.62 6.21 -2.38 -0.01 1.61 16 32 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.41 5.04 6.17 -92.71 -0.57 4.46 16 34 H 0.10 2.06 7.44 -2.91 -0.02 2.04 16 35 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.09 0.60 6.75 -2.38 -0.02 0.58 16 37 H 0.05 0.55 7.85 -2.39 -0.02 0.54 16 38 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 39 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 40 H 0.07 0.33 7.88 -2.39 -0.02 0.31 16 41 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 42 H 0.05 0.56 7.85 -2.39 -0.02 0.55 16 43 H 0.09 0.61 6.74 -2.38 -0.02 0.60 16 44 H 0.08 0.52 5.99 -2.39 -0.01 0.51 16 45 H 0.08 1.22 7.45 -2.38 -0.02 1.20 16 46 H 0.06 1.27 7.45 -2.38 -0.02 1.25 16 47 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 48 H 0.35 11.69 5.86 -89.69 -0.53 11.16 16 49 H 0.11 3.17 7.43 -2.38 -0.02 3.16 16 50 H 0.07 2.03 8.06 -2.38 -0.02 2.01 16 51 H 0.40 19.12 7.90 -92.71 -0.73 18.38 16 52 H 0.28 13.89 8.31 -92.71 -0.77 13.12 16 Total: -1.00 -74.58 407.35 0.46 -74.13 By element: Atomic # 1 Polarization: 43.55 SS G_CDS: -0.89 Total: 42.67 kcal Atomic # 6 Polarization: 6.52 SS G_CDS: 5.65 Total: 12.16 kcal Atomic # 7 Polarization: -113.12 SS G_CDS: -6.22 Total: -119.34 kcal Atomic # 8 Polarization: -54.68 SS G_CDS: -0.11 Total: -54.79 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Total: -74.58 0.46 -74.13 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485139528.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.355 kcal (2) G-P(sol) polarization free energy of solvation -74.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds