Wall clock time and date at job start Tue Mar 31 2020 20:47:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47322 * 2 1 4 4 C 1.52997 * 109.47079 * 240.00216 * 2 1 3 5 5 N 1.46509 * 109.47209 * 185.00133 * 4 2 1 6 6 C 1.46496 * 119.99828 * 89.99617 * 5 4 2 7 7 C 1.34770 * 119.99788 * 269.99836 * 5 4 2 8 8 O 1.21616 * 120.00444 * 3.38113 * 7 5 4 9 9 C 1.47099 * 120.00081 * 183.38186 * 7 5 4 10 10 C 1.31564 * 119.85703 * 212.79585 * 9 7 5 11 11 C 1.51407 * 120.29332 * 179.97438 * 10 9 7 12 12 C 1.53037 * 108.57167 * 71.59169 * 11 10 9 13 13 C 1.51784 * 110.81101 * 274.28637 * 12 11 10 14 14 C 1.51776 * 113.83822 * 66.94014 * 13 12 11 15 15 C 1.51409 * 119.85268 * 32.52130 * 9 7 5 16 16 N 1.46896 * 109.47292 * 119.99808 * 2 1 3 17 17 C 1.46897 * 111.00445 * 275.00083 * 16 2 1 18 18 C 1.50696 * 109.47145 * 179.97438 * 17 16 2 19 19 O 1.21288 * 120.00254 * 0.02562 * 18 17 16 20 20 N 1.34785 * 119.99997 * 179.97438 * 18 17 16 21 21 C 1.37096 * 119.99801 * 180.02562 * 20 18 17 22 22 H 1.07998 * 120.00470 * 0.02562 * 21 20 18 23 23 C 1.38953 * 119.99620 * 180.02562 * 21 20 18 24 24 N 1.31414 * 119.99822 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 119.99849 * 180.02562 * 23 21 20 26 26 H 1.48493 * 109.47157 * 359.97438 * 25 23 21 27 27 H 1.48501 * 109.47041 * 120.00443 * 25 23 21 28 28 H 1.48506 * 109.47143 * 239.99844 * 25 23 21 29 29 H 1.08999 * 109.47322 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.47020 * 300.00265 * 1 2 3 31 31 H 1.09001 * 109.47044 * 59.99705 * 1 2 3 32 32 H 1.09003 * 109.47027 * 304.99861 * 4 2 1 33 33 H 1.08998 * 109.47206 * 64.99926 * 4 2 1 34 34 H 1.09007 * 109.46993 * 83.80462 * 6 5 4 35 35 H 1.09000 * 109.46827 * 203.79895 * 6 5 4 36 36 H 1.08998 * 109.47550 * 323.80698 * 6 5 4 37 37 H 1.07996 * 119.85259 * 359.96165 * 10 9 7 38 38 H 1.08997 * 109.62033 * 191.31791 * 11 10 9 39 39 H 1.09000 * 109.62258 * 311.68451 * 11 10 9 40 40 H 1.09005 * 109.21198 * 34.62793 * 12 11 10 41 41 H 1.08998 * 109.21053 * 153.98978 * 12 11 10 42 42 H 1.09000 * 108.60835 * 188.06466 * 13 12 11 43 43 H 1.08999 * 108.60784 * 305.95777 * 13 12 11 44 44 H 1.09000 * 109.21293 * 53.40562 * 14 13 12 45 45 H 1.09009 * 109.20986 * 172.76571 * 14 13 12 46 46 H 1.09002 * 109.62163 * 228.16077 * 15 9 7 47 47 H 1.09007 * 109.61843 * 348.71092 * 15 9 7 48 48 H 1.00901 * 110.99887 * 38.95503 * 16 2 1 49 49 H 1.09001 * 109.46999 * 299.99859 * 17 16 2 50 50 H 1.09000 * 109.47241 * 59.99861 * 17 16 2 51 51 H 0.96996 * 119.99851 * 0.02562 * 20 18 17 52 52 H 0.97002 * 119.99933 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 3.5001 -0.8264 -1.1906 6 6 4.1258 -1.9919 -0.5612 7 6 4.2676 0.1492 -1.7156 8 8 3.7496 1.1454 -2.1829 9 6 5.7318 0.0091 -1.7235 10 6 6.4925 1.0757 -1.6025 11 6 8.0007 0.9428 -1.6088 12 6 8.4536 0.5962 -3.0290 13 6 8.3921 -0.9020 -3.2640 14 6 6.9830 -1.4658 -3.2629 15 6 6.3570 -1.3627 -1.8645 16 7 2.0197 -0.6924 1.1994 17 6 2.0825 0.2226 2.3469 18 6 2.5874 -0.5218 3.5559 19 8 2.8678 -1.6987 3.4701 20 7 2.7284 0.1204 4.7325 21 6 3.1882 -0.5567 5.8323 22 1 3.4379 -1.6047 5.7559 23 6 3.3330 0.1053 7.0454 24 7 3.0287 1.3803 7.1384 25 14 3.9602 -0.8171 8.5437 26 1 4.2288 -2.2310 8.1780 27 1 5.2135 -0.1834 9.0263 28 1 2.9363 -0.7702 9.6183 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.6053 -1.7198 -1.2952 33 1 1.7516 -0.1582 -2.1369 34 1 4.1819 -2.8077 -1.2820 35 1 5.1307 -1.7302 -0.2299 36 1 3.5304 -2.3052 0.2964 37 1 6.0391 2.0503 -1.4985 38 1 8.4525 1.8856 -1.3004 39 1 8.3013 0.1512 -0.9225 40 1 7.8035 1.0986 -3.7454 41 1 9.4782 0.9394 -3.1725 42 1 8.8542 -1.1223 -4.2264 43 1 8.9647 -1.4006 -2.4819 44 1 6.3727 -0.9077 -3.9729 45 1 7.0155 -2.5131 -3.5636 46 1 7.1283 -1.4932 -1.1055 47 1 5.5900 -2.1283 -1.7463 48 1 1.4496 -1.4979 1.4100 49 1 2.7589 1.0462 2.1182 50 1 1.0871 0.6163 2.5526 51 1 2.5045 1.0617 4.8011 52 1 3.1294 1.8424 7.9853 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485865613.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:59 Heat of formation + Delta-G solvation = -52.404802 kcal Electronic energy + Delta-G solvation = -30298.202932 eV Core-core repulsion = 26297.998372 eV Total energy + Delta-G solvation = -4000.204561 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.35419 -38.51159 -38.01505 -36.73228 -34.97098 -33.89379 -32.75220 -32.12919 -31.27601 -30.67783 -27.51525 -26.74273 -26.26473 -25.02044 -24.27249 -23.80075 -21.23655 -20.70558 -20.05824 -19.22695 -18.14105 -17.89170 -16.72531 -16.46337 -16.04670 -15.52922 -15.35197 -14.99295 -14.90089 -14.57359 -14.42219 -13.98453 -13.79751 -13.78500 -13.67356 -13.34207 -13.21306 -12.99779 -12.81080 -12.49046 -12.34653 -12.14950 -12.03638 -11.72652 -11.64972 -11.60097 -11.50449 -11.32079 -11.19588 -11.05983 -10.90777 -10.89461 -10.83522 -10.37644 -10.35364 -10.22952 -9.59857 -9.52162 -9.09061 -8.68388 -8.33952 -7.97972 -7.89777 -6.41921 -3.82791 1.55787 3.06030 3.15572 3.26084 3.32823 3.34131 3.91372 4.10629 4.36152 4.41707 4.57746 4.64469 4.77498 4.88976 4.95111 5.00230 5.09278 5.16252 5.18091 5.24429 5.30096 5.35724 5.37180 5.44730 5.48332 5.56453 5.58743 5.62860 5.68556 5.75402 5.77777 5.80855 5.86143 5.89903 5.95005 5.97563 6.00424 6.07770 6.11775 6.16867 6.26110 6.28694 6.39232 6.57258 6.68947 7.23268 7.54744 7.55683 7.70392 8.06267 8.30864 8.60953 9.17546 9.54604 10.05583 10.75922 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.010700 B = 0.002883 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2616.173955 B = 9709.168736 C =11281.937609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.064 3.936 3 H 0.081 0.919 4 C 0.131 3.869 5 N -0.588 5.588 6 C 0.074 3.926 7 C 0.554 3.446 8 O -0.554 6.554 9 C -0.167 4.167 10 C -0.082 4.082 11 C -0.095 4.095 12 C -0.113 4.113 13 C -0.119 4.119 14 C -0.114 4.114 15 C -0.106 4.106 16 N -0.657 5.657 17 C 0.052 3.948 18 C 0.443 3.557 19 O -0.584 6.584 20 N -0.565 5.565 21 C -0.298 4.298 22 H 0.103 0.897 23 C 0.021 3.979 24 N -0.902 5.902 25 Si 0.929 3.071 26 H -0.268 1.268 27 H -0.281 1.281 28 H -0.282 1.282 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.048 0.952 35 H 0.079 0.921 36 H 0.094 0.906 37 H 0.118 0.882 38 H 0.072 0.928 39 H 0.079 0.921 40 H 0.064 0.936 41 H 0.065 0.935 42 H 0.057 0.943 43 H 0.060 0.940 44 H 0.061 0.939 45 H 0.064 0.936 46 H 0.079 0.921 47 H 0.096 0.904 48 H 0.347 0.653 49 H 0.082 0.918 50 H 0.042 0.958 51 H 0.392 0.608 52 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.847 -2.906 -20.330 21.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.047 4.047 3 H 0.099 0.901 4 C 0.007 3.993 5 N -0.318 5.318 6 C -0.068 4.068 7 C 0.344 3.656 8 O -0.434 6.434 9 C -0.170 4.170 10 C -0.101 4.101 11 C -0.132 4.132 12 C -0.150 4.150 13 C -0.157 4.157 14 C -0.152 4.152 15 C -0.142 4.142 16 N -0.289 5.289 17 C -0.080 4.080 18 C 0.229 3.771 19 O -0.469 6.469 20 N -0.201 5.201 21 C -0.428 4.428 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.543 5.543 25 Si 0.756 3.244 26 H -0.192 1.192 27 H -0.207 1.207 28 H -0.208 1.208 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.093 0.907 33 H 0.100 0.900 34 H 0.066 0.934 35 H 0.098 0.902 36 H 0.113 0.887 37 H 0.136 0.864 38 H 0.091 0.909 39 H 0.097 0.903 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.076 0.924 43 H 0.079 0.921 44 H 0.080 0.920 45 H 0.082 0.918 46 H 0.097 0.903 47 H 0.114 0.886 48 H 0.166 0.834 49 H 0.100 0.900 50 H 0.060 0.940 51 H 0.225 0.775 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.440 -3.015 -20.618 21.536 hybrid contribution -0.868 0.470 1.257 1.598 sum 4.572 -2.545 -19.361 20.056 Atomic orbital electron populations 1.22454 0.96935 1.02205 1.02425 1.22030 0.92475 0.98945 0.91268 0.90105 1.21456 0.79669 1.00819 0.97342 1.47403 1.06079 1.21584 1.56758 1.22268 1.00123 0.86426 0.97974 1.18528 0.87238 0.82350 0.77533 1.90753 1.74999 1.29547 1.48133 1.21115 0.92521 0.96899 1.06493 1.23173 0.95325 0.98091 0.93558 1.20923 0.92107 1.02589 0.97569 1.21249 1.01131 0.96320 0.96329 1.21147 0.97129 0.95706 1.01685 1.21395 0.96088 1.00717 0.96976 1.21625 1.00804 0.94344 0.97447 1.60187 1.57263 1.09022 1.02457 1.21670 0.99773 0.95728 0.90873 1.19807 0.85018 0.88190 0.84129 1.90499 1.55458 1.16237 1.84683 1.41884 1.57757 1.12459 1.08007 1.19737 1.39870 0.96415 0.86740 0.87891 1.25268 0.97704 0.95768 0.99268 1.69625 1.48722 1.08884 1.27063 0.85810 0.78256 0.79612 0.80717 1.19218 1.20744 1.20797 0.92272 0.92274 0.92056 0.90668 0.89959 0.93381 0.90227 0.88726 0.86386 0.90894 0.90280 0.91740 0.91666 0.92425 0.92131 0.91987 0.91758 0.90294 0.88577 0.83385 0.89985 0.94000 0.77510 0.91932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.96 9.16 37.16 0.34 -1.62 16 2 C 0.06 0.84 2.89 -67.72 -0.20 0.64 16 3 H 0.08 1.22 7.80 -51.93 -0.40 0.81 16 4 C 0.13 1.57 5.15 -4.04 -0.02 1.55 16 5 N -0.59 -7.66 2.73 -182.97 -0.50 -8.16 16 6 C 0.07 0.87 8.36 59.84 0.50 1.37 16 7 C 0.55 8.14 7.38 -12.67 -0.09 8.05 16 8 O -0.55 -9.80 16.23 5.26 0.09 -9.72 16 9 C -0.17 -2.05 4.44 -102.53 -0.46 -2.51 16 10 C -0.08 -0.96 8.89 -35.81 -0.32 -1.28 16 11 C -0.09 -0.85 5.61 -27.52 -0.15 -1.01 16 12 C -0.11 -0.90 5.66 -27.33 -0.15 -1.05 16 13 C -0.12 -0.90 5.28 -27.97 -0.15 -1.04 16 14 C -0.11 -0.96 5.67 -27.06 -0.15 -1.11 16 15 C -0.11 -1.01 3.89 -27.24 -0.11 -1.12 16 16 N -0.66 -10.14 4.04 -108.00 -0.44 -10.57 16 17 C 0.05 0.93 5.97 -4.98 -0.03 0.90 16 18 C 0.44 10.30 7.82 -10.98 -0.09 10.21 16 19 O -0.58 -15.26 15.78 5.55 0.09 -15.17 16 20 N -0.56 -14.30 5.29 -10.96 -0.06 -14.36 16 21 C -0.30 -8.27 9.68 -14.93 -0.14 -8.42 16 22 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 23 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 24 N -0.90 -24.65 13.05 55.50 0.72 -23.92 16 25 Si 0.93 20.98 29.55 -169.99 -5.02 15.96 16 26 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 27 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 28 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 29 H 0.06 0.59 8.13 -51.93 -0.42 0.16 16 30 H 0.06 0.68 7.45 -51.92 -0.39 0.30 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.76 8.07 -51.93 -0.42 0.34 16 33 H 0.08 1.01 7.47 -51.93 -0.39 0.62 16 34 H 0.05 0.45 7.09 -51.92 -0.37 0.08 16 35 H 0.08 0.95 5.25 -51.93 -0.27 0.67 16 36 H 0.09 1.29 6.78 -51.93 -0.35 0.94 16 37 H 0.12 1.52 7.80 -52.49 -0.41 1.11 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.08 0.70 6.75 -51.93 -0.35 0.35 16 40 H 0.06 0.57 7.85 -51.93 -0.41 0.16 16 41 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 42 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 43 H 0.06 0.43 7.88 -51.93 -0.41 0.02 16 44 H 0.06 0.60 7.85 -51.93 -0.41 0.19 16 45 H 0.06 0.47 8.14 -51.92 -0.42 0.04 16 46 H 0.08 0.72 6.74 -51.93 -0.35 0.37 16 47 H 0.10 0.89 3.89 -51.92 -0.20 0.68 16 48 H 0.35 5.41 8.17 -39.29 -0.32 5.09 16 49 H 0.08 1.46 8.06 -51.93 -0.42 1.04 16 50 H 0.04 0.69 7.44 -51.93 -0.39 0.30 16 51 H 0.39 9.62 7.90 -40.82 -0.32 9.30 16 52 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 403.87 15.07 6.09 6.09 Total: -1.00 -32.02 403.87 -8.97 -40.99 By element: Atomic # 1 Polarization: 23.45 SS G_CDS: -8.62 Total: 14.83 kcal Atomic # 6 Polarization: 5.36 SS G_CDS: -1.32 Total: 4.04 kcal Atomic # 7 Polarization: -56.75 SS G_CDS: -0.27 Total: -57.02 kcal Atomic # 8 Polarization: -25.06 SS G_CDS: 0.17 Total: -24.89 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -32.02 -8.97 -40.99 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485865613.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.412 kcal (2) G-P(sol) polarization free energy of solvation -32.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds