Wall clock time and date at job start Tue Mar 31 2020 20:47:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47555 * 2 1 4 4 C 1.53004 * 109.46939 * 119.99574 * 2 1 3 5 5 N 1.46500 * 109.47278 * 174.99708 * 4 2 1 6 6 C 1.46494 * 120.00174 * 270.00166 * 5 4 2 7 7 C 1.34776 * 119.99342 * 90.00343 * 5 4 2 8 8 O 1.21279 * 120.00459 * 359.97438 * 7 5 4 9 9 C 1.50703 * 119.99466 * 180.02562 * 7 5 4 10 10 C 1.53952 * 113.57643 * 179.97438 * 9 7 5 11 11 C 1.52906 * 86.78292 * 139.41476 * 10 9 7 12 12 C 1.52913 * 121.13846 * 100.81627 * 11 10 9 13 13 C 1.53952 * 86.78179 * 100.82243 * 12 11 10 14 14 C 1.53068 * 121.06931 * 209.35994 * 11 10 9 15 15 C 1.52911 * 88.04026 * 335.10071 * 11 10 9 16 16 N 1.46894 * 109.47283 * 239.99584 * 2 1 3 17 17 C 1.46892 * 111.00294 * 85.00348 * 16 2 1 18 18 C 1.50699 * 109.47537 * 179.97438 * 17 16 2 19 19 O 1.21292 * 120.00085 * 0.02562 * 18 17 16 20 20 N 1.34776 * 120.00307 * 179.97438 * 18 17 16 21 21 C 1.37100 * 120.00414 * 180.02562 * 20 18 17 22 22 H 1.08000 * 119.99471 * 0.02562 * 21 20 18 23 23 C 1.38943 * 120.00420 * 179.97438 * 21 20 18 24 24 N 1.31410 * 120.00456 * 180.02562 * 23 21 20 25 25 Si 1.86803 * 119.99951 * 0.02562 * 23 21 20 26 26 H 1.48502 * 109.46849 * 89.99797 * 25 23 21 27 27 H 1.48501 * 109.47177 * 209.99944 * 25 23 21 28 28 H 1.48501 * 109.47115 * 330.00382 * 25 23 21 29 29 H 1.09005 * 109.46633 * 60.00033 * 1 2 3 30 30 H 1.08993 * 109.47514 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47363 * 300.00704 * 1 2 3 32 32 H 1.09000 * 109.46763 * 54.99641 * 4 2 1 33 33 H 1.08997 * 109.46868 * 295.00341 * 4 2 1 34 34 H 1.08996 * 109.47036 * 269.99928 * 6 5 4 35 35 H 1.08998 * 109.47264 * 30.00185 * 6 5 4 36 36 H 1.09002 * 109.46891 * 149.99986 * 6 5 4 37 37 H 1.08999 * 112.82769 * 48.91216 * 9 7 5 38 38 H 1.08999 * 113.66546 * 24.94401 * 10 9 7 39 39 H 1.09003 * 113.65863 * 253.88138 * 10 9 7 40 40 H 1.09000 * 113.66161 * 346.35132 * 12 11 10 41 41 H 1.09004 * 113.74945 * 215.30259 * 12 11 10 42 42 H 1.09002 * 113.58142 * 139.33940 * 13 12 11 43 43 H 1.09004 * 113.57653 * 270.05541 * 13 12 11 44 44 H 1.09003 * 113.66420 * 144.67806 * 14 11 10 45 45 H 1.09001 * 113.71350 * 13.57398 * 14 11 10 46 46 H 1.09005 * 113.66371 * 139.37856 * 15 11 10 47 47 H 1.08999 * 113.66122 * 270.42255 * 15 11 10 48 48 H 1.00907 * 111.00326 * 321.04691 * 16 2 1 49 49 H 1.09003 * 109.46907 * 300.00120 * 17 16 2 50 50 H 1.08998 * 109.47365 * 59.99988 * 17 16 2 51 51 H 0.97009 * 119.99884 * 0.02562 * 20 18 17 52 52 H 0.96994 * 120.00355 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5000 -0.8264 1.1907 6 6 4.1257 -1.9920 0.5615 7 6 4.2674 0.1492 1.7158 8 8 3.7494 1.1143 2.2363 9 6 5.7694 0.0412 1.6550 10 6 6.4990 1.2351 2.2971 11 6 7.4808 0.2144 2.8736 12 6 8.8489 -0.0171 2.2310 13 6 9.4276 0.8681 3.3497 14 6 8.2042 0.4743 4.1972 15 6 6.3713 -0.8328 2.7701 16 7 2.0197 -0.6925 -1.1993 17 6 2.0826 0.2224 -2.3468 18 6 2.5887 -0.5218 -3.5556 19 8 2.8689 -1.6988 -3.4698 20 7 2.7289 0.1202 -4.7323 21 6 3.1888 -0.5569 -5.8321 22 1 3.4383 -1.6049 -5.7556 23 6 3.3329 0.1048 -7.0454 24 7 3.7732 -0.5443 -8.0997 25 14 2.9006 1.9173 -7.1778 26 1 4.1012 2.7361 -6.8720 27 1 2.4357 2.2158 -8.5562 28 1 1.8214 2.2407 -6.2104 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.6052 -1.7197 1.2953 33 1 1.7515 -0.1582 2.1370 34 1 4.2821 -2.7687 1.3100 35 1 3.4757 -2.3723 -0.2265 36 1 5.0850 -1.7022 0.1327 37 1 6.1354 -0.2087 0.6592 38 1 5.9100 1.7517 3.0549 39 1 6.9489 1.9139 1.5726 40 1 8.9440 0.4175 1.2359 41 1 9.1849 -1.0532 2.2750 42 1 10.3724 0.5016 3.7511 43 1 9.4588 1.9276 3.0952 44 1 8.3574 -0.4237 4.7958 45 1 7.7850 1.3010 4.7709 46 1 6.7192 -1.8060 2.4236 47 1 5.7464 -0.8974 3.6608 48 1 1.4496 -1.4980 -1.4099 49 1 1.0872 0.6161 -2.5525 50 1 2.7590 1.0460 -2.1182 51 1 2.5044 1.0614 -4.8011 52 1 3.8742 -0.0823 -8.9465 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485914326.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:28 Heat of formation + Delta-G solvation = -24.016696 kcal Electronic energy + Delta-G solvation = -30016.076221 eV Core-core repulsion = 26017.102661 eV Total energy + Delta-G solvation = -3998.973560 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.05460 -39.33799 -38.49710 -36.89953 -34.88711 -34.69332 -33.92980 -31.71092 -31.00381 -27.61829 -26.68705 -26.40204 -26.03241 -25.96021 -24.58890 -23.65933 -21.90596 -20.83317 -19.40748 -18.83540 -18.34788 -18.16401 -17.14656 -16.35711 -15.95981 -15.70655 -15.57676 -15.47725 -15.02144 -14.84304 -14.66284 -14.32909 -13.91114 -13.39409 -13.22650 -13.05565 -12.92406 -12.84244 -12.62478 -12.57472 -12.36615 -12.30289 -12.23226 -12.20491 -12.06600 -11.83150 -11.71946 -11.43428 -11.20297 -11.16242 -11.07859 -10.95626 -10.60605 -10.48389 -10.31004 -10.20587 -9.99373 -9.58604 -9.49560 -8.76993 -8.46318 -8.19951 -8.02585 -6.32860 -3.84216 2.68770 3.01675 3.06333 3.12556 3.14309 3.72966 4.07998 4.12544 4.17099 4.20564 4.37100 4.49352 4.55187 4.59041 4.79863 4.85353 4.92832 5.10126 5.17629 5.19338 5.20108 5.26686 5.41342 5.42641 5.46972 5.47644 5.54931 5.58247 5.61809 5.63258 5.66730 5.67899 5.71723 5.74817 5.76332 5.83333 5.84756 5.89651 5.97863 6.04865 6.11548 6.17133 6.21103 6.28875 6.62022 7.09394 7.51155 7.56728 7.59967 8.12709 8.28321 8.58087 8.93168 9.41040 9.81020 10.80236 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.010668 B = 0.002773 C = 0.002403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2623.937888 B =10093.274063 C =11649.494231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.065 3.935 3 H 0.080 0.920 4 C 0.129 3.871 5 N -0.592 5.592 6 C 0.086 3.914 7 C 0.524 3.476 8 O -0.553 6.553 9 C -0.133 4.133 10 C -0.091 4.091 11 C -0.106 4.106 12 C -0.118 4.118 13 C -0.140 4.140 14 C -0.127 4.127 15 C -0.106 4.106 16 N -0.658 5.658 17 C 0.049 3.951 18 C 0.452 3.548 19 O -0.566 6.566 20 N -0.591 5.591 21 C -0.304 4.304 22 H 0.120 0.880 23 C 0.042 3.958 24 N -0.881 5.881 25 Si 0.879 3.121 26 H -0.270 1.270 27 H -0.277 1.277 28 H -0.270 1.270 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.043 0.957 35 H 0.093 0.907 36 H 0.067 0.933 37 H 0.114 0.886 38 H 0.096 0.904 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.084 0.916 42 H 0.065 0.935 43 H 0.079 0.921 44 H 0.081 0.919 45 H 0.067 0.933 46 H 0.075 0.925 47 H 0.083 0.917 48 H 0.348 0.652 49 H 0.043 0.957 50 H 0.083 0.917 51 H 0.370 0.630 52 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.139 2.273 23.580 23.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.047 4.047 3 H 0.098 0.902 4 C 0.006 3.994 5 N -0.322 5.322 6 C -0.057 4.057 7 C 0.312 3.688 8 O -0.432 6.432 9 C -0.154 4.154 10 C -0.129 4.129 11 C -0.106 4.106 12 C -0.155 4.155 13 C -0.177 4.177 14 C -0.165 4.165 15 C -0.144 4.144 16 N -0.290 5.290 17 C -0.084 4.084 18 C 0.237 3.763 19 O -0.448 6.448 20 N -0.231 5.231 21 C -0.433 4.433 22 H 0.137 0.863 23 C -0.161 4.161 24 N -0.521 5.521 25 Si 0.705 3.295 26 H -0.196 1.196 27 H -0.202 1.202 28 H -0.196 1.196 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.093 0.907 33 H 0.101 0.899 34 H 0.062 0.938 35 H 0.111 0.889 36 H 0.086 0.914 37 H 0.132 0.868 38 H 0.114 0.886 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.102 0.898 42 H 0.084 0.916 43 H 0.097 0.903 44 H 0.099 0.901 45 H 0.086 0.914 46 H 0.094 0.906 47 H 0.102 0.898 48 H 0.168 0.832 49 H 0.061 0.939 50 H 0.102 0.898 51 H 0.203 0.797 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.784 2.029 23.819 24.203 hybrid contribution -1.336 1.524 -0.832 2.190 sum 2.448 3.553 22.987 23.389 Atomic orbital electron populations 1.22455 0.96893 1.02304 1.02407 1.22038 0.92515 0.98869 0.91267 0.90158 1.21447 0.79985 1.00809 0.97190 1.47547 1.06027 1.21735 1.56919 1.21828 0.99618 0.86674 0.97597 1.20464 0.89131 0.81897 0.77312 1.90640 1.75089 1.31632 1.45854 1.22709 0.91534 1.00093 1.01043 1.22566 0.95423 0.95012 0.99887 1.22460 0.93105 0.97689 0.97379 1.22667 0.94067 1.00325 0.98434 1.22811 0.97544 1.00051 0.97323 1.22769 0.96544 1.01395 0.95748 1.22688 0.96761 0.97381 0.97570 1.60187 1.57461 1.08992 1.02352 1.21708 0.99828 0.95858 0.90960 1.19707 0.84627 0.88209 0.83713 1.90545 1.53983 1.15954 1.84318 1.42227 1.60072 1.11155 1.09596 1.19416 1.40135 0.97980 0.85774 0.86284 1.25031 0.97475 0.98363 0.95256 1.69615 1.45164 1.36533 1.00836 0.86685 0.79054 0.85215 0.78513 1.19582 1.20177 1.19561 0.92350 0.92183 0.91989 0.90726 0.89936 0.93818 0.88875 0.91408 0.86809 0.88569 0.91018 0.91134 0.89766 0.91625 0.90257 0.90083 0.91419 0.90627 0.89804 0.83189 0.93874 0.89830 0.79724 0.91610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.82 9.16 37.16 0.34 -1.48 16 2 C 0.06 0.78 2.89 -67.71 -0.20 0.58 16 3 H 0.08 1.11 7.80 -51.93 -0.40 0.71 16 4 C 0.13 1.46 5.15 -4.04 -0.02 1.44 16 5 N -0.59 -7.17 2.73 -181.58 -0.50 -7.67 16 6 C 0.09 0.96 9.86 59.84 0.59 1.55 16 7 C 0.52 6.98 7.20 -10.98 -0.08 6.91 16 8 O -0.55 -9.00 15.47 5.56 0.09 -8.91 16 9 C -0.13 -1.44 2.95 -90.79 -0.27 -1.71 16 10 C -0.09 -0.95 7.17 -26.28 -0.19 -1.14 16 11 C -0.11 -0.92 1.11 -154.63 -0.17 -1.09 16 12 C -0.12 -0.93 7.84 -26.28 -0.21 -1.13 16 13 C -0.14 -1.02 8.08 -25.75 -0.21 -1.23 16 14 C -0.13 -0.98 7.85 -26.20 -0.21 -1.18 16 15 C -0.11 -0.95 7.36 -26.28 -0.19 -1.14 16 16 N -0.66 -9.52 4.13 -108.00 -0.45 -9.97 16 17 C 0.05 0.81 5.96 -4.98 -0.03 0.78 16 18 C 0.45 9.99 7.82 -10.99 -0.09 9.91 16 19 O -0.57 -14.52 15.78 5.55 0.09 -14.43 16 20 N -0.59 -13.98 5.09 -10.96 -0.06 -14.04 16 21 C -0.30 -8.53 10.16 -14.93 -0.15 -8.68 16 22 H 0.12 3.80 7.39 -52.49 -0.39 3.42 16 23 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 24 N -0.88 -25.64 13.96 55.50 0.77 -24.87 16 25 Si 0.88 19.43 27.74 -169.99 -4.71 14.71 16 26 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 27 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 28 H -0.27 -5.47 6.52 56.52 0.37 -5.10 16 29 H 0.06 0.62 7.45 -51.93 -0.39 0.23 16 30 H 0.06 0.56 8.13 -51.93 -0.42 0.13 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.72 8.07 -51.93 -0.42 0.30 16 33 H 0.08 0.96 7.42 -51.93 -0.39 0.57 16 34 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.09 1.20 6.92 -51.93 -0.36 0.84 16 36 H 0.07 0.76 6.22 -51.93 -0.32 0.44 16 37 H 0.11 1.23 6.95 -51.93 -0.36 0.87 16 38 H 0.10 1.12 7.42 -51.93 -0.39 0.74 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 43 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 46 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.08 0.78 8.09 -51.93 -0.42 0.36 16 48 H 0.35 5.15 8.17 -39.29 -0.32 4.83 16 49 H 0.04 0.64 7.44 -51.93 -0.39 0.25 16 50 H 0.08 1.32 8.06 -51.93 -0.42 0.91 16 51 H 0.37 7.79 5.76 -40.82 -0.24 7.56 16 52 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 412.74 15.07 6.22 6.22 Total: -1.00 -32.57 412.74 -8.73 -41.29 By element: Atomic # 1 Polarization: 23.23 SS G_CDS: -9.01 Total: 14.22 kcal Atomic # 6 Polarization: 4.59 SS G_CDS: -1.17 Total: 3.42 kcal Atomic # 7 Polarization: -56.31 SS G_CDS: -0.22 Total: -56.53 kcal Atomic # 8 Polarization: -23.51 SS G_CDS: 0.17 Total: -23.34 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -4.71 Total: 14.71 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -32.57 -8.73 -41.29 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485914326.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.278 kcal (2) G-P(sol) polarization free energy of solvation -32.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds