Wall clock time and date at job start Tue Mar 31 2020 20:47:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47555 * 2 1 4 4 C 1.53004 * 109.46939 * 119.99574 * 2 1 3 5 5 N 1.46500 * 109.47278 * 174.99708 * 4 2 1 6 6 C 1.46494 * 120.00174 * 270.00166 * 5 4 2 7 7 C 1.34776 * 119.99342 * 90.00343 * 5 4 2 8 8 O 1.21279 * 120.00459 * 359.97438 * 7 5 4 9 9 C 1.50703 * 119.99466 * 180.02562 * 7 5 4 10 10 C 1.53952 * 113.57643 * 179.97438 * 9 7 5 11 11 C 1.52906 * 86.78292 * 139.41476 * 10 9 7 12 12 C 1.52913 * 121.13846 * 100.81627 * 11 10 9 13 13 C 1.53952 * 86.78179 * 100.82243 * 12 11 10 14 14 C 1.53068 * 121.06931 * 209.35994 * 11 10 9 15 15 C 1.52911 * 88.04026 * 335.10071 * 11 10 9 16 16 N 1.46894 * 109.47283 * 239.99584 * 2 1 3 17 17 C 1.46892 * 111.00294 * 85.00348 * 16 2 1 18 18 C 1.50699 * 109.47537 * 179.97438 * 17 16 2 19 19 O 1.21292 * 120.00085 * 0.02562 * 18 17 16 20 20 N 1.34776 * 120.00307 * 179.97438 * 18 17 16 21 21 C 1.37100 * 120.00414 * 180.02562 * 20 18 17 22 22 H 1.08000 * 119.99471 * 0.02562 * 21 20 18 23 23 C 1.38943 * 120.00420 * 179.97438 * 21 20 18 24 24 N 1.31410 * 120.00456 * 180.02562 * 23 21 20 25 25 Si 1.86803 * 119.99951 * 0.02562 * 23 21 20 26 26 H 1.48502 * 109.46849 * 89.99797 * 25 23 21 27 27 H 1.48501 * 109.47177 * 209.99944 * 25 23 21 28 28 H 1.48501 * 109.47115 * 330.00382 * 25 23 21 29 29 H 1.09005 * 109.46633 * 60.00033 * 1 2 3 30 30 H 1.08993 * 109.47514 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47363 * 300.00704 * 1 2 3 32 32 H 1.09000 * 109.46763 * 54.99641 * 4 2 1 33 33 H 1.08997 * 109.46868 * 295.00341 * 4 2 1 34 34 H 1.08996 * 109.47036 * 269.99928 * 6 5 4 35 35 H 1.08998 * 109.47264 * 30.00185 * 6 5 4 36 36 H 1.09002 * 109.46891 * 149.99986 * 6 5 4 37 37 H 1.08999 * 112.82769 * 48.91216 * 9 7 5 38 38 H 1.08999 * 113.66546 * 24.94401 * 10 9 7 39 39 H 1.09003 * 113.65863 * 253.88138 * 10 9 7 40 40 H 1.09000 * 113.66161 * 346.35132 * 12 11 10 41 41 H 1.09004 * 113.74945 * 215.30259 * 12 11 10 42 42 H 1.09002 * 113.58142 * 139.33940 * 13 12 11 43 43 H 1.09004 * 113.57653 * 270.05541 * 13 12 11 44 44 H 1.09003 * 113.66420 * 144.67806 * 14 11 10 45 45 H 1.09001 * 113.71350 * 13.57398 * 14 11 10 46 46 H 1.09005 * 113.66371 * 139.37856 * 15 11 10 47 47 H 1.08999 * 113.66122 * 270.42255 * 15 11 10 48 48 H 1.00907 * 111.00326 * 321.04691 * 16 2 1 49 49 H 1.09003 * 109.46907 * 300.00120 * 17 16 2 50 50 H 1.08998 * 109.47365 * 59.99988 * 17 16 2 51 51 H 0.97009 * 119.99884 * 0.02562 * 20 18 17 52 52 H 0.96994 * 120.00355 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5000 -0.8264 1.1907 6 6 4.1257 -1.9920 0.5615 7 6 4.2674 0.1492 1.7158 8 8 3.7494 1.1143 2.2363 9 6 5.7694 0.0412 1.6550 10 6 6.4990 1.2351 2.2971 11 6 7.4808 0.2144 2.8736 12 6 8.8489 -0.0171 2.2310 13 6 9.4276 0.8681 3.3497 14 6 8.2042 0.4743 4.1972 15 6 6.3713 -0.8328 2.7701 16 7 2.0197 -0.6925 -1.1993 17 6 2.0826 0.2224 -2.3468 18 6 2.5887 -0.5218 -3.5556 19 8 2.8689 -1.6988 -3.4698 20 7 2.7289 0.1202 -4.7323 21 6 3.1888 -0.5569 -5.8321 22 1 3.4383 -1.6049 -5.7556 23 6 3.3329 0.1048 -7.0454 24 7 3.7732 -0.5443 -8.0997 25 14 2.9006 1.9173 -7.1778 26 1 4.1012 2.7361 -6.8720 27 1 2.4357 2.2158 -8.5562 28 1 1.8214 2.2407 -6.2104 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.6052 -1.7197 1.2953 33 1 1.7515 -0.1582 2.1370 34 1 4.2821 -2.7687 1.3100 35 1 3.4757 -2.3723 -0.2265 36 1 5.0850 -1.7022 0.1327 37 1 6.1354 -0.2087 0.6592 38 1 5.9100 1.7517 3.0549 39 1 6.9489 1.9139 1.5726 40 1 8.9440 0.4175 1.2359 41 1 9.1849 -1.0532 2.2750 42 1 10.3724 0.5016 3.7511 43 1 9.4588 1.9276 3.0952 44 1 8.3574 -0.4237 4.7958 45 1 7.7850 1.3010 4.7709 46 1 6.7192 -1.8060 2.4236 47 1 5.7464 -0.8974 3.6608 48 1 1.4496 -1.4980 -1.4099 49 1 1.0872 0.6161 -2.5525 50 1 2.7590 1.0460 -2.1182 51 1 2.5044 1.0614 -4.8011 52 1 3.8742 -0.0823 -8.9465 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485914326.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:27 Heat of formation + Delta-G solvation = -45.194491 kcal Electronic energy + Delta-G solvation = -30016.994559 eV Core-core repulsion = 26017.102661 eV Total energy + Delta-G solvation = -3999.891898 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.87641 -40.45720 -40.03278 -38.06558 -36.10802 -35.78694 -35.45262 -33.75088 -32.18764 -28.53381 -28.10017 -27.47108 -26.81160 -26.59090 -25.74588 -25.06948 -22.68731 -21.78377 -21.28076 -20.30541 -19.75866 -18.89066 -18.10376 -17.70125 -17.28607 -16.97221 -16.53092 -16.50778 -16.19095 -16.09781 -15.80006 -15.40984 -15.22632 -14.91335 -14.57297 -14.38531 -13.97614 -13.87899 -13.71915 -13.64082 -13.45352 -13.40217 -13.24947 -13.11130 -12.96065 -12.92166 -12.79730 -12.68395 -12.43486 -12.42188 -11.99595 -11.96208 -11.86997 -11.79827 -11.52023 -11.18771 -11.02107 -10.94368 -10.45582 -10.42623 -10.24733 -9.68095 -9.13357 -8.41902 -6.01944 1.28590 1.33429 1.41783 1.67162 1.94848 2.18821 2.21127 2.70900 3.14510 3.42347 3.45021 3.48133 3.59469 3.72402 3.81163 3.92625 3.98045 4.04708 4.11543 4.24447 4.29852 4.35691 4.39579 4.50242 4.56320 4.58304 4.61624 4.72630 4.75611 4.80423 4.85489 4.88853 4.91958 4.93683 4.97529 5.00174 5.06593 5.11384 5.12966 5.22439 5.23919 5.37708 5.51936 5.55188 5.59319 5.67958 5.89636 6.01769 6.42639 6.53849 6.59052 6.87646 7.26924 7.39464 7.94687 8.75518 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.010668 B = 0.002773 C = 0.002403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2623.937888 B =10093.274063 C =11649.494231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.072 3.928 3 H 0.064 0.936 4 C 0.128 3.872 5 N -0.591 5.591 6 C 0.089 3.911 7 C 0.517 3.483 8 O -0.588 6.588 9 C -0.135 4.135 10 C -0.094 4.094 11 C -0.104 4.104 12 C -0.117 4.117 13 C -0.137 4.137 14 C -0.125 4.125 15 C -0.097 4.097 16 N -0.665 5.665 17 C 0.064 3.936 18 C 0.454 3.546 19 O -0.605 6.605 20 N -0.594 5.594 21 C -0.324 4.324 22 H 0.060 0.940 23 C -0.013 4.013 24 N -0.933 5.933 25 Si 0.960 3.040 26 H -0.259 1.259 27 H -0.274 1.274 28 H -0.235 1.235 29 H 0.055 0.945 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.093 0.907 33 H 0.081 0.919 34 H 0.067 0.933 35 H 0.076 0.924 36 H 0.064 0.936 37 H 0.114 0.886 38 H 0.080 0.920 39 H 0.068 0.932 40 H 0.064 0.936 41 H 0.095 0.905 42 H 0.077 0.923 43 H 0.076 0.924 44 H 0.092 0.908 45 H 0.063 0.937 46 H 0.090 0.910 47 H 0.080 0.920 48 H 0.347 0.653 49 H 0.071 0.929 50 H 0.096 0.904 51 H 0.387 0.613 52 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.546 3.759 25.215 25.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.039 4.039 3 H 0.082 0.918 4 C 0.004 3.996 5 N -0.320 5.320 6 C -0.054 4.054 7 C 0.307 3.693 8 O -0.469 6.469 9 C -0.156 4.156 10 C -0.132 4.132 11 C -0.104 4.104 12 C -0.155 4.155 13 C -0.175 4.175 14 C -0.163 4.163 15 C -0.134 4.134 16 N -0.297 5.297 17 C -0.068 4.068 18 C 0.242 3.758 19 O -0.489 6.489 20 N -0.236 5.236 21 C -0.453 4.453 22 H 0.078 0.922 23 C -0.212 4.212 24 N -0.574 5.574 25 Si 0.780 3.220 26 H -0.184 1.184 27 H -0.200 1.200 28 H -0.158 1.158 29 H 0.074 0.926 30 H 0.088 0.912 31 H 0.093 0.907 32 H 0.112 0.888 33 H 0.099 0.901 34 H 0.086 0.914 35 H 0.095 0.905 36 H 0.083 0.917 37 H 0.131 0.869 38 H 0.099 0.901 39 H 0.087 0.913 40 H 0.083 0.917 41 H 0.113 0.887 42 H 0.095 0.905 43 H 0.095 0.905 44 H 0.110 0.890 45 H 0.082 0.918 46 H 0.108 0.892 47 H 0.099 0.901 48 H 0.167 0.833 49 H 0.089 0.911 50 H 0.114 0.886 51 H 0.222 0.778 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.177 3.501 25.480 25.915 hybrid contribution -1.140 0.926 -1.294 1.957 sum 2.037 4.427 24.186 24.672 Atomic orbital electron populations 1.22379 0.94904 1.03147 1.02923 1.21984 0.94014 0.97649 0.90247 0.91764 1.21535 0.79627 1.01790 0.96642 1.47656 1.06480 1.21651 1.56246 1.21825 0.98929 0.86816 0.97784 1.20879 0.90130 0.81496 0.76815 1.90616 1.75851 1.32944 1.47528 1.22746 0.90004 1.01126 1.01677 1.22523 0.95928 0.95197 0.99568 1.22427 0.93161 0.96533 0.98287 1.22708 0.93416 1.01069 0.98258 1.22806 0.97928 0.99860 0.96880 1.22793 0.96361 1.01791 0.95329 1.22649 0.96397 0.97852 0.96524 1.60164 1.58294 1.08916 1.02341 1.21565 1.01104 0.95402 0.88744 1.20804 0.82456 0.87943 0.84617 1.90528 1.55034 1.18173 1.85149 1.42079 1.60710 1.11825 1.08971 1.19001 1.42045 0.96163 0.88133 0.92226 1.26033 0.96574 1.04566 0.94012 1.69788 1.46434 1.39399 1.01767 0.85432 0.80078 0.77103 0.79347 1.18394 1.19952 1.15845 0.92571 0.91194 0.90718 0.88832 0.90115 0.91406 0.90508 0.91688 0.86852 0.90129 0.91321 0.91746 0.88683 0.90471 0.90548 0.88958 0.91789 0.89193 0.90127 0.83307 0.91134 0.88589 0.77783 0.91175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.04 9.16 71.98 0.66 -2.38 16 2 C 0.07 1.60 2.89 44.92 0.13 1.73 16 3 H 0.06 1.67 7.80 -2.39 -0.02 1.66 16 4 C 0.13 2.68 5.15 86.38 0.44 3.12 16 5 N -0.59 -13.71 2.73 -846.78 -2.31 -16.02 16 6 C 0.09 1.89 9.86 127.77 1.26 3.15 16 7 C 0.52 13.56 7.20 87.66 0.63 14.19 16 8 O -0.59 -19.12 15.47 -3.02 -0.05 -19.16 16 9 C -0.13 -2.85 2.95 -10.90 -0.03 -2.88 16 10 C -0.09 -1.96 7.17 30.88 0.22 -1.74 16 11 C -0.10 -1.68 1.11 -52.26 -0.06 -1.73 16 12 C -0.12 -1.67 7.84 30.89 0.24 -1.43 16 13 C -0.14 -1.79 8.08 31.23 0.25 -1.53 16 14 C -0.13 -1.74 7.85 30.94 0.24 -1.49 16 15 C -0.10 -1.59 7.36 30.88 0.23 -1.36 16 16 N -0.66 -18.28 4.13 -495.60 -2.05 -20.32 16 17 C 0.06 1.99 5.96 85.56 0.51 2.50 16 18 C 0.45 19.96 7.82 87.66 0.69 20.65 16 19 O -0.60 -31.78 15.78 -3.07 -0.05 -31.83 16 20 N -0.59 -27.85 5.09 -306.99 -1.56 -29.41 16 21 C -0.32 -18.76 10.16 84.04 0.85 -17.91 16 22 H 0.06 4.08 7.39 -2.91 -0.02 4.06 16 23 C -0.01 -0.72 5.50 84.93 0.47 -0.26 16 24 N -0.93 -55.91 13.96 21.66 0.30 -55.61 16 25 Si 0.96 39.09 27.74 68.60 1.90 40.99 16 26 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 27 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 28 H -0.23 -8.16 6.52 99.48 0.65 -7.51 16 29 H 0.06 1.02 7.45 -2.38 -0.02 1.00 16 30 H 0.07 1.10 8.13 -2.39 -0.02 1.08 16 31 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.09 1.61 8.07 -2.39 -0.02 1.59 16 33 H 0.08 1.77 7.42 -2.39 -0.02 1.75 16 34 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.08 1.92 6.92 -2.39 -0.02 1.90 16 36 H 0.06 1.41 6.22 -2.39 -0.01 1.40 16 37 H 0.11 2.41 6.95 -2.39 -0.02 2.39 16 38 H 0.08 1.93 7.42 -2.39 -0.02 1.91 16 39 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.09 1.16 8.14 -2.38 -0.02 1.14 16 42 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 44 H 0.09 1.08 8.14 -2.39 -0.02 1.07 16 45 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 46 H 0.09 1.23 8.14 -2.38 -0.02 1.21 16 47 H 0.08 1.40 8.09 -2.39 -0.02 1.38 16 48 H 0.35 9.82 8.17 -89.69 -0.73 9.09 16 49 H 0.07 1.85 7.44 -2.39 -0.02 1.83 16 50 H 0.10 2.80 8.06 -2.39 -0.02 2.78 16 51 H 0.39 15.36 5.76 -92.70 -0.53 14.83 16 52 H 0.28 15.29 8.31 -92.71 -0.77 14.52 16 Total: -1.00 -74.62 412.74 2.52 -72.10 By element: Atomic # 1 Polarization: 47.05 SS G_CDS: -0.41 Total: 46.64 kcal Atomic # 6 Polarization: 5.89 SS G_CDS: 6.74 Total: 12.63 kcal Atomic # 7 Polarization: -115.75 SS G_CDS: -5.62 Total: -121.37 kcal Atomic # 8 Polarization: -50.90 SS G_CDS: -0.10 Total: -50.99 kcal Atomic # 14 Polarization: 39.09 SS G_CDS: 1.90 Total: 40.99 kcal Total: -74.62 2.52 -72.10 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485914326.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.902 kcal (2) G-P(sol) polarization free energy of solvation -74.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds