Wall clock time and date at job start Tue Mar 31 2020 20:52:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 109.47094 * 2 1 4 4 C 1.52998 * 109.47262 * 239.99986 * 2 1 3 5 5 N 1.46499 * 109.47631 * 184.99747 * 4 2 1 6 6 C 1.46500 * 119.99999 * 270.00479 * 5 4 2 7 7 C 1.34773 * 120.00032 * 89.99705 * 5 4 2 8 8 O 1.21292 * 119.99886 * 0.02562 * 7 5 4 9 9 C 1.50697 * 120.00338 * 180.02562 * 7 5 4 10 10 H 1.08997 * 115.55397 * 54.22238 * 9 7 5 11 11 C 1.53087 * 117.51319 * 200.00450 * 9 7 5 12 12 C 1.52560 * 117.51051 * 268.50593 * 9 7 5 13 13 C 1.53867 * 120.82462 * 142.32974 * 12 9 7 14 14 C 1.54989 * 104.06293 * 192.36650 * 13 12 9 15 15 C 1.54923 * 102.82319 * 37.56476 * 14 13 12 16 16 C 1.53480 * 121.08500 * 2.96261 * 12 9 7 17 17 N 1.46901 * 109.47285 * 120.00058 * 2 1 3 18 18 C 1.46903 * 110.99892 * 274.99849 * 17 2 1 19 19 C 1.50703 * 109.47167 * 180.02562 * 18 17 2 20 20 O 1.21295 * 119.99703 * 359.97438 * 19 18 17 21 21 N 1.34774 * 119.99959 * 180.02562 * 19 18 17 22 22 C 1.37099 * 119.99986 * 179.97438 * 21 19 18 23 23 H 1.08005 * 119.99645 * 359.97438 * 22 21 19 24 24 C 1.38941 * 120.00208 * 179.97438 * 22 21 19 25 25 N 1.31410 * 120.00417 * 179.97438 * 24 22 21 26 26 Si 1.86806 * 120.00109 * 0.02562 * 24 22 21 27 27 H 1.48496 * 109.47106 * 89.99777 * 26 24 22 28 28 H 1.48501 * 109.47173 * 209.99824 * 26 24 22 29 29 H 1.48504 * 109.46806 * 329.99888 * 26 24 22 30 30 H 1.09007 * 109.46828 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47495 * 60.00160 * 1 2 3 32 32 H 1.09007 * 109.47249 * 300.00002 * 1 2 3 33 33 H 1.08999 * 109.47246 * 304.99881 * 4 2 1 34 34 H 1.08999 * 109.47153 * 64.99792 * 4 2 1 35 35 H 1.08995 * 109.47489 * 89.99684 * 6 5 4 36 36 H 1.08998 * 109.46703 * 209.99392 * 6 5 4 37 37 H 1.08999 * 109.46981 * 329.99037 * 6 5 4 38 38 H 1.08995 * 117.51319 * 214.91574 * 11 9 7 39 39 H 1.09007 * 117.51190 * 359.97438 * 11 9 7 40 40 H 1.09002 * 110.51408 * 311.01227 * 13 12 9 41 41 H 1.09003 * 110.50748 * 73.71994 * 13 12 9 42 42 H 1.09001 * 110.73850 * 279.23218 * 14 13 12 43 43 H 1.08995 * 110.89842 * 155.97465 * 14 13 12 44 44 H 1.08992 * 110.48392 * 203.59930 * 15 14 13 45 45 H 1.09004 * 110.59028 * 81.01527 * 15 14 13 46 46 H 1.09000 * 110.06748 * 263.30311 * 16 12 9 47 47 H 1.09000 * 110.07611 * 24.77912 * 16 12 9 48 48 H 1.00895 * 111.00130 * 38.95304 * 17 2 1 49 49 H 1.09005 * 109.47176 * 300.00208 * 18 17 2 50 50 H 1.08997 * 109.46998 * 60.00339 * 18 17 2 51 51 H 0.96995 * 119.99888 * 359.97438 * 21 19 18 52 52 H 0.96998 * 120.00590 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 3.5000 -0.8264 -1.1907 6 6 4.3342 0.2341 -1.7613 7 6 4.0758 -1.8986 -0.6116 8 8 3.3851 -2.7767 -0.1395 9 6 5.5776 -2.0065 -0.5509 10 1 6.0922 -1.1572 -0.1015 11 6 6.1783 -3.3969 -0.3280 12 6 6.2791 -2.7298 -1.6964 13 6 7.6328 -2.2316 -2.2320 14 6 7.8265 -3.0164 -3.5544 15 6 6.3913 -3.0708 -4.1353 16 6 5.4884 -3.2648 -2.8981 17 7 2.0197 -0.6925 1.1994 18 6 2.0825 0.2226 2.3469 19 6 2.5886 -0.5215 3.5557 20 8 2.8689 -1.6985 3.4699 21 7 2.7288 0.1206 4.7324 22 6 3.1887 -0.5564 5.8322 23 1 3.4383 -1.6044 5.7558 24 6 3.3337 0.1056 7.0451 25 7 3.7741 -0.5434 8.0995 26 14 2.9014 1.9181 7.1775 27 1 1.4721 2.0598 7.5545 28 1 3.7523 2.5556 8.2142 29 1 3.1361 2.5798 5.8689 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 0.5139 0.8900 33 1 1.6054 -1.7198 -1.2951 34 1 1.7516 -0.1583 -2.1369 35 1 4.5400 0.9849 -0.9984 36 1 5.2733 -0.1925 -2.1138 37 1 3.8102 0.6988 -2.5965 38 1 7.0882 -3.4625 0.2684 39 1 5.4870 -4.2334 -0.2249 40 1 7.5957 -1.1596 -2.4261 41 1 8.4315 -2.4659 -1.5283 42 1 8.2009 -4.0207 -3.3559 43 1 8.4960 -2.4827 -4.2288 44 1 6.2881 -3.9136 -4.8187 45 1 6.1475 -2.1373 -4.6427 46 1 5.2670 -4.3230 -2.7590 47 1 4.5627 -2.7019 -3.0175 48 1 1.4496 -1.4979 1.4100 49 1 2.7589 1.0463 2.1182 50 1 1.0871 0.6163 2.5525 51 1 2.5043 1.0617 4.8010 52 1 3.8750 -0.0813 8.9464 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485942465.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:52:32 Heat of formation + Delta-G solvation = -45.375387 kcal Electronic energy + Delta-G solvation = -30597.386961 eV Core-core repulsion = 26597.487219 eV Total energy + Delta-G solvation = -3999.899742 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 2.09 seconds Orbital eigenvalues (eV) -40.33072 -38.69501 -38.14722 -36.59054 -34.79091 -34.12107 -33.82224 -31.61421 -30.88361 -28.96318 -27.55703 -26.43036 -26.35662 -25.53075 -23.77497 -23.06783 -21.05078 -20.71798 -19.47344 -19.25660 -18.41720 -18.16151 -16.77730 -16.25520 -16.07158 -15.69097 -15.49025 -15.29531 -14.83644 -14.73593 -14.47005 -13.98872 -13.61209 -13.45702 -13.17963 -13.14021 -12.97007 -12.81397 -12.59602 -12.47642 -12.33129 -12.26748 -12.15059 -12.00480 -11.88638 -11.58020 -11.35619 -11.32871 -11.27585 -11.11423 -11.09589 -10.94147 -10.79692 -10.55314 -10.19800 -9.91281 -9.83048 -9.49352 -9.27320 -8.58406 -8.33458 -8.10334 -7.87141 -6.24355 -3.75091 2.90057 3.06017 3.09928 3.17699 3.19028 3.80494 3.85291 4.14842 4.20066 4.27856 4.44750 4.70223 4.72919 4.85144 4.89392 4.96000 5.00829 5.07054 5.11572 5.23763 5.25586 5.26381 5.30488 5.37970 5.41043 5.50514 5.55885 5.61722 5.63424 5.66502 5.71275 5.73066 5.75562 5.76958 5.84735 5.86394 5.92046 5.98292 5.98943 6.04564 6.06674 6.11237 6.12774 6.23738 6.70936 7.29569 7.64807 7.66643 7.80401 8.23075 8.64588 8.68499 9.03428 9.50515 9.93586 10.89230 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013126 B = 0.002955 C = 0.002609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2132.595978 B = 9474.124372 C =10727.930294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.065 3.935 3 H 0.074 0.926 4 C 0.131 3.869 5 N -0.608 5.608 6 C 0.084 3.916 7 C 0.560 3.440 8 O -0.509 6.509 9 C -0.167 4.167 10 H 0.120 0.880 11 C -0.132 4.132 12 C -0.113 4.113 13 C -0.089 4.089 14 C -0.122 4.122 15 C -0.121 4.121 16 C -0.090 4.090 17 N -0.649 5.649 18 C 0.049 3.951 19 C 0.451 3.549 20 O -0.553 6.553 21 N -0.596 5.596 22 C -0.301 4.301 23 H 0.119 0.881 24 C 0.039 3.961 25 N -0.885 5.885 26 Si 0.879 3.121 27 H -0.272 1.272 28 H -0.277 1.277 29 H -0.270 1.270 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.081 0.919 34 H 0.073 0.927 35 H 0.050 0.950 36 H 0.070 0.930 37 H 0.063 0.937 38 H 0.100 0.900 39 H 0.105 0.895 40 H 0.070 0.930 41 H 0.068 0.932 42 H 0.068 0.932 43 H 0.065 0.935 44 H 0.064 0.936 45 H 0.064 0.936 46 H 0.068 0.932 47 H 0.064 0.936 48 H 0.355 0.645 49 H 0.080 0.920 50 H 0.040 0.960 51 H 0.369 0.631 52 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.323 4.020 -26.954 27.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.047 4.047 3 H 0.092 0.908 4 C 0.008 3.992 5 N -0.342 5.342 6 C -0.060 4.060 7 C 0.347 3.653 8 O -0.383 6.383 9 C -0.188 4.188 10 H 0.138 0.862 11 C -0.169 4.169 12 C -0.113 4.113 13 C -0.127 4.127 14 C -0.159 4.159 15 C -0.159 4.159 16 C -0.128 4.128 17 N -0.281 5.281 18 C -0.084 4.084 19 C 0.236 3.764 20 O -0.434 6.434 21 N -0.236 5.236 22 C -0.429 4.429 23 H 0.136 0.864 24 C -0.163 4.163 25 N -0.525 5.525 26 Si 0.706 3.294 27 H -0.198 1.198 28 H -0.203 1.203 29 H -0.196 1.196 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.099 0.901 34 H 0.091 0.909 35 H 0.069 0.931 36 H 0.089 0.911 37 H 0.082 0.918 38 H 0.119 0.881 39 H 0.124 0.876 40 H 0.088 0.912 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.084 0.916 44 H 0.083 0.917 45 H 0.083 0.917 46 H 0.086 0.914 47 H 0.083 0.917 48 H 0.175 0.825 49 H 0.098 0.902 50 H 0.058 0.942 51 H 0.201 0.799 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.868 2.782 -26.685 26.982 hybrid contribution -1.258 2.007 0.799 2.499 sum 1.610 4.789 -25.886 26.375 Atomic orbital electron populations 1.22479 0.97161 1.02467 1.02056 1.22024 0.92353 0.98078 0.92251 0.90773 1.21425 0.80221 1.01652 0.95952 1.47398 1.05850 1.21400 1.59505 1.21694 0.95578 0.90837 0.97906 1.19224 0.88182 0.81197 0.76651 1.90695 1.64115 1.39723 1.43727 1.22248 0.93151 0.98889 1.04511 0.86168 1.23028 1.02275 0.95106 0.96536 1.21838 0.96757 1.02788 0.89940 1.21920 0.94484 0.99568 0.96689 1.22459 0.96673 1.00477 0.96302 1.22334 0.95001 1.01508 0.97015 1.21654 0.97667 1.01106 0.92334 1.60086 1.57952 1.08363 1.01722 1.21717 0.99409 0.95826 0.91409 1.19775 0.84542 0.88356 0.83699 1.90615 1.52913 1.15805 1.84033 1.42217 1.60826 1.10982 1.09608 1.19431 1.39943 0.97894 0.85675 0.86360 1.25018 0.97709 0.98268 0.95282 1.69622 1.45663 1.36488 1.00773 0.86676 0.79184 0.85190 0.78340 1.19765 1.20260 1.19587 0.92094 0.92271 0.92429 0.90102 0.90887 0.93149 0.91089 0.91800 0.88140 0.87630 0.91183 0.91306 0.91370 0.91598 0.91738 0.91717 0.91363 0.91693 0.82453 0.90153 0.94220 0.79893 0.91738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.86 9.16 37.16 0.34 -1.52 16 2 C 0.06 0.78 2.89 -67.72 -0.20 0.58 16 3 H 0.07 0.84 7.80 -51.93 -0.40 0.43 16 4 C 0.13 1.46 5.24 -4.04 -0.02 1.44 16 5 N -0.61 -7.32 2.78 -181.58 -0.50 -7.82 16 6 C 0.08 0.72 10.29 59.85 0.62 1.33 16 7 C 0.56 8.60 5.48 -10.99 -0.06 8.54 16 8 O -0.51 -10.01 15.18 5.55 0.08 -9.92 16 9 C -0.17 -2.21 4.26 -91.95 -0.39 -2.60 16 10 H 0.12 1.54 8.11 -51.93 -0.42 1.12 16 11 C -0.13 -1.73 9.74 -26.91 -0.26 -1.99 16 12 C -0.11 -1.18 2.20 -154.25 -0.34 -1.52 16 13 C -0.09 -0.73 6.58 -25.23 -0.17 -0.90 16 14 C -0.12 -0.87 6.91 -24.67 -0.17 -1.04 16 15 C -0.12 -0.91 6.84 -24.99 -0.17 -1.08 16 16 C -0.09 -0.89 6.19 -25.75 -0.16 -1.05 16 17 N -0.65 -10.87 4.15 -107.99 -0.45 -11.32 16 18 C 0.05 0.87 5.97 -4.97 -0.03 0.84 16 19 C 0.45 10.81 7.82 -10.99 -0.09 10.73 16 20 O -0.55 -15.83 15.78 5.54 0.09 -15.75 16 21 N -0.60 -14.82 5.09 -10.96 -0.06 -14.87 16 22 C -0.30 -8.81 10.16 -14.94 -0.15 -8.97 16 23 H 0.12 3.98 7.39 -52.48 -0.39 3.59 16 24 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 25 N -0.88 -26.57 13.96 55.50 0.77 -25.80 16 26 Si 0.88 19.94 27.74 -169.99 -4.71 15.23 16 27 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 28 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 29 H -0.27 -5.60 6.52 56.52 0.37 -5.24 16 30 H 0.06 0.66 8.13 -51.93 -0.42 0.23 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.62 7.45 -51.93 -0.39 0.23 16 33 H 0.08 1.04 7.42 -51.93 -0.39 0.65 16 34 H 0.07 0.58 7.89 -51.93 -0.41 0.17 16 35 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.07 0.56 6.67 -51.93 -0.35 0.22 16 37 H 0.06 0.40 7.89 -51.93 -0.41 -0.01 16 38 H 0.10 1.20 8.14 -51.93 -0.42 0.77 16 39 H 0.11 1.56 7.82 -51.92 -0.41 1.16 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.07 0.56 8.11 -51.93 -0.42 0.14 16 42 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 44 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.06 0.69 7.25 -51.93 -0.38 0.32 16 48 H 0.35 6.69 8.17 -39.29 -0.32 6.37 16 49 H 0.08 1.29 8.06 -51.93 -0.42 0.87 16 50 H 0.04 0.62 7.44 -51.93 -0.39 0.23 16 51 H 0.37 8.06 5.76 -40.82 -0.24 7.83 16 52 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 413.57 15.07 6.23 6.23 Total: -1.00 -35.86 413.57 -9.00 -44.86 By element: Atomic # 1 Polarization: 24.45 SS G_CDS: -9.11 Total: 15.34 kcal Atomic # 6 Polarization: 5.17 SS G_CDS: -1.34 Total: 3.82 kcal Atomic # 7 Polarization: -59.58 SS G_CDS: -0.23 Total: -59.81 kcal Atomic # 8 Polarization: -25.84 SS G_CDS: 0.17 Total: -25.67 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -4.71 Total: 15.23 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -35.86 -9.00 -44.86 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485942465.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.516 kcal (2) G-P(sol) polarization free energy of solvation -35.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.10 seconds