Wall clock time and date at job start Tue Mar 31 2020 20:52:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 109.47094 * 2 1 4 4 C 1.52998 * 109.47262 * 239.99986 * 2 1 3 5 5 N 1.46499 * 109.47631 * 184.99747 * 4 2 1 6 6 C 1.46500 * 119.99999 * 270.00479 * 5 4 2 7 7 C 1.34773 * 120.00032 * 89.99705 * 5 4 2 8 8 O 1.21292 * 119.99886 * 0.02562 * 7 5 4 9 9 C 1.50697 * 120.00338 * 180.02562 * 7 5 4 10 10 H 1.08997 * 115.55397 * 54.22238 * 9 7 5 11 11 C 1.53087 * 117.51319 * 200.00450 * 9 7 5 12 12 C 1.52560 * 117.51051 * 268.50593 * 9 7 5 13 13 C 1.53867 * 120.82462 * 142.32974 * 12 9 7 14 14 C 1.54989 * 104.06293 * 192.36650 * 13 12 9 15 15 C 1.54923 * 102.82319 * 37.56476 * 14 13 12 16 16 C 1.53480 * 121.08500 * 2.96261 * 12 9 7 17 17 N 1.46901 * 109.47285 * 120.00058 * 2 1 3 18 18 C 1.46903 * 110.99892 * 274.99849 * 17 2 1 19 19 C 1.50703 * 109.47167 * 180.02562 * 18 17 2 20 20 O 1.21295 * 119.99703 * 359.97438 * 19 18 17 21 21 N 1.34774 * 119.99959 * 180.02562 * 19 18 17 22 22 C 1.37099 * 119.99986 * 179.97438 * 21 19 18 23 23 H 1.08005 * 119.99645 * 359.97438 * 22 21 19 24 24 C 1.38941 * 120.00208 * 179.97438 * 22 21 19 25 25 N 1.31410 * 120.00417 * 179.97438 * 24 22 21 26 26 Si 1.86806 * 120.00109 * 0.02562 * 24 22 21 27 27 H 1.48496 * 109.47106 * 89.99777 * 26 24 22 28 28 H 1.48501 * 109.47173 * 209.99824 * 26 24 22 29 29 H 1.48504 * 109.46806 * 329.99888 * 26 24 22 30 30 H 1.09007 * 109.46828 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47495 * 60.00160 * 1 2 3 32 32 H 1.09007 * 109.47249 * 300.00002 * 1 2 3 33 33 H 1.08999 * 109.47246 * 304.99881 * 4 2 1 34 34 H 1.08999 * 109.47153 * 64.99792 * 4 2 1 35 35 H 1.08995 * 109.47489 * 89.99684 * 6 5 4 36 36 H 1.08998 * 109.46703 * 209.99392 * 6 5 4 37 37 H 1.08999 * 109.46981 * 329.99037 * 6 5 4 38 38 H 1.08995 * 117.51319 * 214.91574 * 11 9 7 39 39 H 1.09007 * 117.51190 * 359.97438 * 11 9 7 40 40 H 1.09002 * 110.51408 * 311.01227 * 13 12 9 41 41 H 1.09003 * 110.50748 * 73.71994 * 13 12 9 42 42 H 1.09001 * 110.73850 * 279.23218 * 14 13 12 43 43 H 1.08995 * 110.89842 * 155.97465 * 14 13 12 44 44 H 1.08992 * 110.48392 * 203.59930 * 15 14 13 45 45 H 1.09004 * 110.59028 * 81.01527 * 15 14 13 46 46 H 1.09000 * 110.06748 * 263.30311 * 16 12 9 47 47 H 1.09000 * 110.07611 * 24.77912 * 16 12 9 48 48 H 1.00895 * 111.00130 * 38.95304 * 17 2 1 49 49 H 1.09005 * 109.47176 * 300.00208 * 18 17 2 50 50 H 1.08997 * 109.46998 * 60.00339 * 18 17 2 51 51 H 0.96995 * 119.99888 * 359.97438 * 21 19 18 52 52 H 0.96998 * 120.00590 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 3.5000 -0.8264 -1.1907 6 6 4.3342 0.2341 -1.7613 7 6 4.0758 -1.8986 -0.6116 8 8 3.3851 -2.7767 -0.1395 9 6 5.5776 -2.0065 -0.5509 10 1 6.0922 -1.1572 -0.1015 11 6 6.1783 -3.3969 -0.3280 12 6 6.2791 -2.7298 -1.6964 13 6 7.6328 -2.2316 -2.2320 14 6 7.8265 -3.0164 -3.5544 15 6 6.3913 -3.0708 -4.1353 16 6 5.4884 -3.2648 -2.8981 17 7 2.0197 -0.6925 1.1994 18 6 2.0825 0.2226 2.3469 19 6 2.5886 -0.5215 3.5557 20 8 2.8689 -1.6985 3.4699 21 7 2.7288 0.1206 4.7324 22 6 3.1887 -0.5564 5.8322 23 1 3.4383 -1.6044 5.7558 24 6 3.3337 0.1056 7.0451 25 7 3.7741 -0.5434 8.0995 26 14 2.9014 1.9181 7.1775 27 1 1.4721 2.0598 7.5545 28 1 3.7523 2.5556 8.2142 29 1 3.1361 2.5798 5.8689 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 0.5139 0.8900 33 1 1.6054 -1.7198 -1.2951 34 1 1.7516 -0.1583 -2.1369 35 1 4.5400 0.9849 -0.9984 36 1 5.2733 -0.1925 -2.1138 37 1 3.8102 0.6988 -2.5965 38 1 7.0882 -3.4625 0.2684 39 1 5.4870 -4.2334 -0.2249 40 1 7.5957 -1.1596 -2.4261 41 1 8.4315 -2.4659 -1.5283 42 1 8.2009 -4.0207 -3.3559 43 1 8.4960 -2.4827 -4.2288 44 1 6.2881 -3.9136 -4.8187 45 1 6.1475 -2.1373 -4.6427 46 1 5.2670 -4.3230 -2.7590 47 1 4.5627 -2.7019 -3.0175 48 1 1.4496 -1.4979 1.4100 49 1 2.7589 1.0463 2.1182 50 1 1.0871 0.6163 2.5525 51 1 2.5043 1.0617 4.8010 52 1 3.8750 -0.0813 8.9464 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485942465.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:52:29 Heat of formation + Delta-G solvation = -71.113248 kcal Electronic energy + Delta-G solvation = -30598.503039 eV Core-core repulsion = 26597.487219 eV Total energy + Delta-G solvation = -4001.015820 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -41.34251 -40.34308 -39.32109 -37.79158 -36.12227 -35.72067 -34.97121 -33.77252 -32.10853 -29.66469 -28.36799 -28.08248 -27.31439 -26.32096 -25.53165 -24.14410 -21.83162 -21.58205 -21.31431 -20.44310 -20.22373 -19.24357 -17.86189 -17.77143 -17.10438 -16.93816 -16.72561 -16.44403 -16.26284 -16.01189 -15.60145 -15.34908 -15.00203 -14.66611 -14.51016 -14.26148 -14.20716 -13.92489 -13.77286 -13.66277 -13.43398 -13.30721 -13.16936 -13.08241 -12.96642 -12.93025 -12.72463 -12.44118 -12.31335 -12.03069 -11.99214 -11.96214 -11.86464 -11.83532 -11.53196 -11.40002 -11.15973 -10.83034 -10.44676 -10.39636 -10.26402 -9.50789 -9.06361 -8.42956 -6.04070 1.27129 1.33429 1.42418 1.81148 1.95546 2.21153 2.24636 2.75395 2.78888 3.12979 3.40079 3.47951 3.66920 3.82002 3.87733 3.97219 4.04192 4.12443 4.27247 4.27868 4.34977 4.39734 4.40487 4.47401 4.52874 4.55173 4.61717 4.73106 4.77884 4.79401 4.83013 4.87171 4.91543 4.95175 4.99772 5.04300 5.05191 5.08711 5.11296 5.23577 5.27544 5.28158 5.38961 5.51102 5.51710 5.81409 5.90654 6.16756 6.44109 6.59170 6.64204 6.87218 7.38285 7.54734 7.97484 8.75350 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013126 B = 0.002955 C = 0.002609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2132.595978 B = 9474.124372 C =10727.930294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.067 3.933 3 H 0.095 0.905 4 C 0.129 3.871 5 N -0.602 5.602 6 C 0.078 3.922 7 C 0.552 3.448 8 O -0.569 6.569 9 C -0.180 4.180 10 H 0.125 0.875 11 C -0.160 4.160 12 C -0.080 4.080 13 C -0.088 4.088 14 C -0.118 4.118 15 C -0.114 4.114 16 C -0.094 4.094 17 N -0.669 5.669 18 C 0.066 3.934 19 C 0.446 3.554 20 O -0.610 6.610 21 N -0.592 5.592 22 C -0.328 4.328 23 H 0.049 0.951 24 C -0.017 4.017 25 N -0.937 5.937 26 Si 0.969 3.031 27 H -0.257 1.257 28 H -0.273 1.273 29 H -0.231 1.231 30 H 0.046 0.954 31 H 0.089 0.911 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.117 0.883 35 H 0.052 0.948 36 H 0.077 0.923 37 H 0.097 0.903 38 H 0.106 0.894 39 H 0.075 0.925 40 H 0.088 0.912 41 H 0.069 0.931 42 H 0.064 0.936 43 H 0.087 0.913 44 H 0.072 0.928 45 H 0.080 0.920 46 H 0.052 0.948 47 H 0.057 0.943 48 H 0.336 0.664 49 H 0.108 0.892 50 H 0.072 0.928 51 H 0.389 0.611 52 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.086 9.025 -30.157 31.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.044 4.044 3 H 0.113 0.887 4 C 0.005 3.995 5 N -0.334 5.334 6 C -0.064 4.064 7 C 0.340 3.660 8 O -0.447 6.447 9 C -0.201 4.201 10 H 0.143 0.857 11 C -0.197 4.197 12 C -0.081 4.081 13 C -0.126 4.126 14 C -0.155 4.155 15 C -0.151 4.151 16 C -0.131 4.131 17 N -0.301 5.301 18 C -0.066 4.066 19 C 0.234 3.766 20 O -0.494 6.494 21 N -0.235 5.235 22 C -0.458 4.458 23 H 0.067 0.933 24 C -0.215 4.215 25 N -0.578 5.578 26 Si 0.788 3.212 27 H -0.181 1.181 28 H -0.198 1.198 29 H -0.155 1.155 30 H 0.065 0.935 31 H 0.108 0.892 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.135 0.865 35 H 0.070 0.930 36 H 0.095 0.905 37 H 0.115 0.885 38 H 0.124 0.876 39 H 0.094 0.906 40 H 0.106 0.894 41 H 0.088 0.912 42 H 0.082 0.918 43 H 0.106 0.894 44 H 0.090 0.910 45 H 0.099 0.901 46 H 0.070 0.930 47 H 0.075 0.925 48 H 0.155 0.845 49 H 0.126 0.874 50 H 0.090 0.910 51 H 0.225 0.775 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.631 7.849 -29.947 31.070 hybrid contribution -1.175 0.305 1.783 2.157 sum 1.456 8.154 -28.164 29.357 Atomic orbital electron populations 1.22390 0.95547 1.02031 1.03406 1.22164 0.93667 0.98406 0.90167 0.88739 1.21585 0.79563 1.00955 0.97380 1.47494 1.06714 1.21056 1.58128 1.21948 0.95870 0.89762 0.98845 1.19617 0.88785 0.81423 0.76172 1.90669 1.65378 1.42039 1.46582 1.22268 0.92423 0.98620 1.06826 0.85730 1.23006 1.02170 0.94632 0.99929 1.21914 0.97751 0.99761 0.88660 1.22008 0.92566 1.00765 0.97221 1.22471 0.96785 1.00432 0.95848 1.22324 0.94376 1.02673 0.95746 1.21702 0.98004 0.99938 0.93490 1.60089 1.58890 1.08270 1.02838 1.21617 1.01163 0.95308 0.88541 1.21103 0.82483 0.88011 0.85022 1.90599 1.54830 1.18838 1.85136 1.42021 1.60960 1.11723 1.08756 1.18976 1.42535 0.95850 0.88404 0.93271 1.26154 0.96380 1.05252 0.93714 1.69813 1.46438 1.39711 1.01788 0.85318 0.79428 0.76194 0.80238 1.18106 1.19770 1.15470 0.93510 0.89217 0.92646 0.92721 0.86500 0.92977 0.90476 0.88474 0.87554 0.90593 0.89352 0.91183 0.91754 0.89408 0.90957 0.90141 0.92962 0.92468 0.84497 0.87386 0.91035 0.77547 0.91110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.09 9.16 71.98 0.66 -2.43 16 2 C 0.07 1.43 2.89 44.91 0.13 1.56 16 3 H 0.09 1.69 7.80 -2.38 -0.02 1.67 16 4 C 0.13 2.61 5.24 86.38 0.45 3.06 16 5 N -0.60 -13.71 2.78 -846.77 -2.35 -16.06 16 6 C 0.08 1.08 10.29 127.77 1.31 2.39 16 7 C 0.55 17.60 5.48 87.66 0.48 18.08 16 8 O -0.57 -24.25 15.18 -3.07 -0.05 -24.29 16 9 C -0.18 -4.96 4.26 -11.66 -0.05 -5.01 16 10 H 0.12 3.24 8.11 -2.39 -0.02 3.22 16 11 C -0.16 -4.59 9.74 30.48 0.30 -4.30 16 12 C -0.08 -1.69 2.20 -52.02 -0.11 -1.80 16 13 C -0.09 -1.28 6.58 31.57 0.21 -1.07 16 14 C -0.12 -1.38 6.91 31.93 0.22 -1.16 16 15 C -0.11 -1.44 6.84 31.72 0.22 -1.22 16 16 C -0.09 -1.83 6.19 31.23 0.19 -1.64 16 17 N -0.67 -22.25 4.15 -495.56 -2.06 -24.31 16 18 C 0.07 2.21 5.97 85.56 0.51 2.72 16 19 C 0.45 21.87 7.82 87.66 0.69 22.55 16 20 O -0.61 -37.35 15.78 -3.08 -0.05 -37.40 16 21 N -0.59 -29.62 5.09 -306.98 -1.56 -31.18 16 22 C -0.33 -20.23 10.16 84.04 0.85 -19.38 16 23 H 0.05 3.63 7.39 -2.91 -0.02 3.61 16 24 C -0.02 -0.97 5.50 84.92 0.47 -0.50 16 25 N -0.94 -58.37 13.96 21.66 0.30 -58.07 16 26 Si 0.97 40.01 27.74 68.60 1.90 41.91 16 27 H -0.26 -10.01 7.11 99.48 0.71 -9.31 16 28 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 29 H -0.23 -8.05 6.52 99.48 0.65 -7.41 16 30 H 0.05 0.96 8.13 -2.38 -0.02 0.94 16 31 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.05 1.02 7.45 -2.38 -0.02 1.00 16 33 H 0.05 1.42 7.42 -2.39 -0.02 1.40 16 34 H 0.12 1.36 7.89 -2.39 -0.02 1.34 16 35 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.08 0.99 6.67 -2.39 -0.02 0.97 16 37 H 0.10 0.73 7.89 -2.39 -0.02 0.71 16 38 H 0.11 2.80 8.14 -2.39 -0.02 2.78 16 39 H 0.08 2.60 7.82 -2.38 -0.02 2.58 16 40 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.07 1.03 8.11 -2.39 -0.02 1.01 16 42 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 44 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 45 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 46 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 47 H 0.06 1.21 7.25 -2.39 -0.02 1.19 16 48 H 0.34 13.26 8.17 -89.70 -0.73 12.53 16 49 H 0.11 3.07 8.06 -2.38 -0.02 3.05 16 50 H 0.07 1.98 7.44 -2.39 -0.02 1.96 16 51 H 0.39 16.04 5.76 -92.71 -0.53 15.50 16 52 H 0.28 15.83 8.31 -92.71 -0.77 15.06 16 Total: -1.00 -89.35 413.57 2.26 -87.09 By element: Atomic # 1 Polarization: 50.85 SS G_CDS: -0.41 Total: 50.44 kcal Atomic # 6 Polarization: 5.34 SS G_CDS: 6.53 Total: 11.86 kcal Atomic # 7 Polarization: -123.95 SS G_CDS: -5.67 Total: -129.62 kcal Atomic # 8 Polarization: -61.60 SS G_CDS: -0.10 Total: -61.69 kcal Atomic # 14 Polarization: 40.01 SS G_CDS: 1.90 Total: 41.91 kcal Total: -89.35 2.26 -87.09 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485942465.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.981 kcal (2) G-P(sol) polarization free energy of solvation -89.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds