Wall clock time and date at job start Tue Mar 31 2020 20:07:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.47107 * 119.99938 * 2 1 4 4 O 1.21609 * 119.99916 * 179.97438 * 3 2 1 5 5 N 1.34775 * 119.99816 * 0.02562 * 3 2 1 6 6 C 1.46501 * 120.00012 * 179.97438 * 5 3 2 7 7 C 1.52992 * 109.47274 * 179.97438 * 6 5 3 8 8 C 1.53001 * 109.47473 * 180.02562 * 7 6 5 9 9 H 1.09005 * 109.47312 * 54.99357 * 8 7 6 10 10 C 1.52997 * 109.47798 * 174.99979 * 8 7 6 11 11 N 1.46901 * 109.46734 * 295.00121 * 8 7 6 12 12 C 1.46902 * 111.00180 * 154.99969 * 11 8 7 13 13 C 1.50699 * 109.47074 * 179.97438 * 12 11 8 14 14 O 1.21293 * 120.00364 * 359.97438 * 13 12 11 15 15 N 1.34782 * 119.99658 * 179.97438 * 13 12 11 16 16 C 1.37103 * 119.99840 * 179.97438 * 15 13 12 17 17 H 1.07997 * 119.99616 * 359.97438 * 16 15 13 18 18 C 1.38944 * 119.99707 * 180.02562 * 16 15 13 19 19 N 1.31418 * 119.99609 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 120.00213 * 359.97438 * 18 16 15 21 21 H 1.48501 * 109.47006 * 90.00312 * 20 18 16 22 22 H 1.48504 * 109.46939 * 210.00111 * 20 18 16 23 23 H 1.48491 * 109.47244 * 330.00103 * 20 18 16 24 24 C 1.32991 * 120.00431 * 180.02562 * 2 1 3 25 25 C 1.51446 * 126.33559 * 359.97438 * 24 2 1 26 26 C 1.54282 * 106.84905 * 180.33712 * 25 24 2 27 27 C 1.54987 * 103.74985 * 23.12444 * 26 25 24 28 28 C 1.51843 * 126.34660 * 179.97438 * 24 2 1 29 29 H 1.08996 * 109.47163 * 269.99633 * 1 2 3 30 30 H 1.09005 * 109.47072 * 30.00205 * 1 2 3 31 31 H 1.09003 * 109.46954 * 149.99479 * 1 2 3 32 32 H 0.97002 * 120.00454 * 359.97438 * 5 3 2 33 33 H 1.08998 * 109.47140 * 299.99950 * 6 5 3 34 34 H 1.09010 * 109.46877 * 59.99981 * 6 5 3 35 35 H 1.09011 * 109.47323 * 300.00026 * 7 6 5 36 36 H 1.09002 * 109.47260 * 59.99933 * 7 6 5 37 37 H 1.09006 * 109.46914 * 300.00227 * 10 8 7 38 38 H 1.08999 * 109.46809 * 59.99498 * 10 8 7 39 39 H 1.08991 * 109.47726 * 179.97438 * 10 8 7 40 40 H 1.00902 * 110.99987 * 278.95009 * 11 8 7 41 41 H 1.09001 * 109.46629 * 299.99983 * 12 11 8 42 42 H 1.08999 * 109.47015 * 59.99508 * 12 11 8 43 43 H 0.96999 * 120.00115 * 359.97438 * 15 13 12 44 44 H 0.97002 * 119.99653 * 179.97438 * 19 18 16 45 45 H 1.08996 * 109.99044 * 299.68404 * 25 24 2 46 46 H 1.09005 * 109.98620 * 60.99354 * 25 24 2 47 47 H 1.08996 * 110.57285 * 141.69135 * 26 25 24 48 48 H 1.09005 * 110.57234 * 264.55907 * 26 25 24 49 49 H 1.08999 * 110.83018 * 204.70408 * 27 26 25 50 50 H 1.09001 * 110.83046 * 81.12560 * 27 26 25 51 51 H 1.09004 * 110.43923 * 274.96947 * 28 24 2 52 52 H 1.09001 * 110.44013 * 37.36013 * 28 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2425 1.2740 0.0000 4 8 3.4586 1.2740 0.0005 5 7 1.5686 2.4411 0.0005 6 6 2.3010 3.7099 0.0011 7 6 1.3068 4.8728 0.0010 8 6 2.0717 6.1978 0.0009 9 1 2.7640 6.2178 -0.8408 10 6 1.0823 7.3580 -0.1249 11 7 2.8234 6.3293 1.2562 12 6 3.9820 7.2162 1.0857 13 6 4.7263 7.3268 2.3913 14 8 4.3304 6.7264 3.3680 15 7 5.8321 8.0931 2.4738 16 6 6.5090 8.1942 3.6617 17 1 6.1559 7.6602 4.5315 18 6 7.6486 8.9845 3.7468 19 7 8.2972 9.0818 4.8857 20 14 8.2588 9.9087 2.2425 21 1 7.6310 11.2538 2.1996 22 1 9.7349 10.0535 2.3156 23 1 7.8956 9.1536 1.0166 24 6 2.1720 -1.1517 -0.0005 25 6 1.5643 -2.5388 -0.0006 26 6 2.7372 -3.5410 0.0074 27 6 3.9137 -2.7264 0.6028 28 6 3.6812 -1.3194 -0.0011 29 1 -0.3633 -0.0001 1.0276 30 1 -0.3633 0.8900 -0.5139 31 1 -0.3633 -0.8900 -0.5139 32 1 0.5986 2.4412 0.0005 33 1 2.9277 3.7673 0.8911 34 1 2.9277 3.7680 -0.8890 35 1 0.6804 4.8152 -0.8893 36 1 0.6798 4.8148 0.8907 37 1 0.5245 7.2604 -1.0564 38 1 0.3901 7.3381 0.7168 39 1 1.6272 8.3020 -0.1245 40 1 2.2268 6.6533 2.0027 41 1 4.6441 6.8062 0.3231 42 1 3.6408 8.2044 0.7774 43 1 6.1489 8.5730 1.6926 44 1 9.0930 9.6333 4.9450 45 1 0.9505 -2.6768 0.8895 46 1 0.9594 -2.6806 -0.8963 47 1 2.5052 -4.3972 0.6407 48 1 2.9707 -3.8656 -1.0067 49 1 4.8710 -3.1343 0.2784 50 1 3.8527 -2.6959 1.6907 51 1 4.0689 -1.2733 -1.0189 52 1 4.1494 -0.5548 0.6186 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001492004271.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:34 Heat of formation + Delta-G solvation = -77.025694 kcal Electronic energy + Delta-G solvation = -28653.275979 eV Core-core repulsion = 24652.003776 eV Total energy + Delta-G solvation = -4001.272203 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.08685 -38.65850 -38.10463 -37.10358 -34.84200 -33.94668 -33.69060 -31.71836 -31.34231 -29.17127 -28.99997 -27.73097 -26.47762 -24.91747 -23.81107 -22.95259 -21.07039 -21.05462 -20.52157 -19.35311 -18.55527 -18.23783 -16.63676 -16.21107 -16.05692 -16.02000 -15.59037 -15.33567 -14.90244 -14.78685 -14.59549 -14.07937 -13.90131 -13.63755 -13.47011 -13.30337 -13.15917 -12.99037 -12.83939 -12.74244 -12.53542 -12.35873 -12.34741 -12.16184 -11.88323 -11.62899 -11.54953 -11.41463 -11.28921 -11.23451 -11.12862 -11.10484 -10.90672 -10.87691 -10.56772 -9.94304 -9.62706 -9.53753 -9.16866 -8.84868 -8.55547 -8.15754 -8.08230 -6.27710 -3.78907 1.22835 3.05750 3.08870 3.14513 3.17353 3.26222 3.78337 4.10354 4.14192 4.16560 4.39866 4.65867 4.68316 4.69176 4.77457 4.86111 4.92188 5.01411 5.13039 5.14995 5.25194 5.25775 5.28532 5.31614 5.35378 5.41208 5.46733 5.47997 5.52929 5.58306 5.61109 5.70367 5.74134 5.74954 5.76842 5.89661 5.95436 5.97363 6.03131 6.04333 6.10719 6.23333 6.29949 6.43968 6.50132 7.13649 7.52096 7.60613 7.62473 8.18333 8.27308 8.63476 8.98674 9.46161 9.86765 10.85516 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.012281 B = 0.002067 C = 0.001842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2279.390856 B =13542.568254 C =15193.819926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.193 4.193 3 C 0.552 3.448 4 O -0.536 6.536 5 N -0.729 5.729 6 C 0.123 3.877 7 C -0.115 4.115 8 C 0.085 3.915 9 H 0.079 0.921 10 C -0.183 4.183 11 N -0.662 5.662 12 C 0.048 3.952 13 C 0.450 3.550 14 O -0.564 6.564 15 N -0.592 5.592 16 C -0.303 4.303 17 H 0.119 0.881 18 C 0.040 3.960 19 N -0.882 5.882 20 Si 0.880 3.120 21 H -0.272 1.272 22 H -0.277 1.277 23 H -0.269 1.269 24 C -0.036 4.036 25 C -0.099 4.099 26 C -0.125 4.125 27 C -0.128 4.128 28 C -0.102 4.102 29 H 0.070 0.930 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.396 0.604 33 H 0.089 0.911 34 H 0.060 0.940 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.059 0.941 38 H 0.059 0.941 39 H 0.057 0.943 40 H 0.351 0.649 41 H 0.087 0.913 42 H 0.044 0.956 43 H 0.370 0.630 44 H 0.273 0.727 45 H 0.080 0.920 46 H 0.079 0.921 47 H 0.069 0.931 48 H 0.068 0.932 49 H 0.070 0.930 50 H 0.069 0.931 51 H 0.082 0.918 52 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.600 -17.789 -16.568 30.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.196 4.196 3 C 0.341 3.659 4 O -0.415 6.415 5 N -0.380 5.380 6 C 0.000 4.000 7 C -0.154 4.154 8 C -0.026 4.026 9 H 0.098 0.902 10 C -0.242 4.242 11 N -0.295 5.295 12 C -0.085 4.085 13 C 0.236 3.764 14 O -0.446 6.446 15 N -0.231 5.231 16 C -0.432 4.432 17 H 0.137 0.863 18 C -0.163 4.163 19 N -0.522 5.522 20 Si 0.706 3.294 21 H -0.197 1.197 22 H -0.202 1.202 23 H -0.195 1.195 24 C -0.037 4.037 25 C -0.136 4.136 26 C -0.163 4.163 27 C -0.166 4.166 28 C -0.139 4.139 29 H 0.089 0.911 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.230 0.770 33 H 0.107 0.893 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.089 0.911 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.171 0.829 41 H 0.105 0.895 42 H 0.062 0.938 43 H 0.203 0.797 44 H 0.083 0.917 45 H 0.099 0.901 46 H 0.098 0.902 47 H 0.087 0.913 48 H 0.087 0.913 49 H 0.089 0.911 50 H 0.088 0.912 51 H 0.100 0.900 52 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -17.436 -18.656 -15.859 30.059 hybrid contribution -0.296 1.827 -1.191 2.201 sum -17.733 -16.828 -17.050 29.805 Atomic orbital electron populations 1.20688 0.90940 1.02592 1.02350 1.20752 0.95890 0.92079 1.10882 1.18245 0.87262 0.83892 0.76531 1.90774 1.13528 1.87437 1.49742 1.45982 1.10142 1.06119 1.75795 1.21365 0.94577 0.80575 1.03497 1.21745 0.97772 0.93793 1.02059 1.21507 0.94441 0.93250 0.93407 0.90236 1.22516 1.00148 0.99272 1.02257 1.60192 1.10223 1.53233 1.05815 1.21734 0.93716 0.95303 0.97734 1.19732 0.83296 0.83598 0.89769 1.90567 1.68174 1.47655 1.38170 1.42213 1.25099 1.43798 1.12013 1.19431 1.06812 1.27834 0.89147 0.86303 1.25043 0.96429 0.97737 0.97048 1.69629 1.18772 1.39470 1.24356 0.86665 0.79525 0.80580 0.82594 1.19716 1.20181 1.19458 1.22732 0.96803 0.93352 0.90860 1.21308 0.98354 0.91411 1.02510 1.22394 0.94999 0.97571 1.01325 1.22593 0.98291 0.95196 1.00499 1.21708 0.92132 0.97544 1.02480 0.91127 0.91867 0.91363 0.76974 0.89304 0.92126 0.91559 0.91105 0.92189 0.92224 0.92413 0.82862 0.89492 0.93775 0.79727 0.91660 0.90113 0.90231 0.91250 0.91325 0.91084 0.91227 0.89960 0.88175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.70 9.35 36.00 0.34 -0.36 16 2 C -0.19 -1.94 6.00 -102.85 -0.62 -2.56 16 3 C 0.55 7.23 7.75 -12.66 -0.10 7.13 16 4 O -0.54 -9.12 13.75 5.27 0.07 -9.05 16 5 N -0.73 -7.86 5.50 -61.49 -0.34 -8.20 16 6 C 0.12 1.50 5.56 -4.05 -0.02 1.47 16 7 C -0.12 -1.09 5.00 -26.73 -0.13 -1.22 16 8 C 0.09 0.92 2.59 -67.71 -0.18 0.74 16 9 H 0.08 0.84 7.80 -51.93 -0.40 0.44 16 10 C -0.18 -1.67 9.16 37.16 0.34 -1.33 16 11 N -0.66 -9.87 5.33 -107.99 -0.58 -10.45 16 12 C 0.05 0.79 5.97 -4.97 -0.03 0.76 16 13 C 0.45 10.37 7.82 -10.98 -0.09 10.29 16 14 O -0.56 -15.38 15.78 5.55 0.09 -15.29 16 15 N -0.59 -14.36 5.09 -10.96 -0.06 -14.42 16 16 C -0.30 -8.75 10.16 -14.93 -0.15 -8.90 16 17 H 0.12 3.92 7.39 -52.49 -0.39 3.53 16 18 C 0.04 1.12 5.50 -17.47 -0.10 1.03 16 19 N -0.88 -26.19 13.96 55.50 0.77 -25.42 16 20 Si 0.88 19.72 27.74 -169.99 -4.71 15.00 16 21 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 22 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 23 H -0.27 -5.53 6.52 56.52 0.37 -5.16 16 24 C -0.04 -0.35 6.12 -100.24 -0.61 -0.96 16 25 C -0.10 -0.67 5.53 -26.85 -0.15 -0.82 16 26 C -0.13 -0.82 6.87 -25.01 -0.17 -0.99 16 27 C -0.13 -1.06 6.95 -24.70 -0.17 -1.23 16 28 C -0.10 -1.10 5.42 -26.33 -0.14 -1.24 16 29 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.33 6.70 -51.93 -0.35 -0.02 16 31 H 0.07 0.36 7.15 -51.93 -0.37 -0.02 16 32 H 0.40 3.04 6.57 -40.82 -0.27 2.77 16 33 H 0.09 1.42 7.75 -51.93 -0.40 1.02 16 34 H 0.06 0.78 8.14 -51.92 -0.42 0.36 16 35 H 0.07 0.48 8.14 -51.92 -0.42 0.06 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.06 0.54 8.13 -51.93 -0.42 0.12 16 39 H 0.06 0.56 7.45 -51.93 -0.39 0.17 16 40 H 0.35 5.47 8.17 -39.29 -0.32 5.14 16 41 H 0.09 1.33 8.06 -51.93 -0.42 0.91 16 42 H 0.04 0.63 7.44 -51.93 -0.39 0.24 16 43 H 0.37 7.89 5.76 -40.82 -0.24 7.65 16 44 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 45 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.08 0.45 7.90 -51.93 -0.41 0.04 16 47 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 48 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 49 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 50 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 51 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 52 H 0.10 1.37 6.26 -51.93 -0.32 1.05 16 LS Contribution 414.02 15.07 6.24 6.24 Total: -1.00 -35.26 414.02 -9.40 -44.65 By element: Atomic # 1 Polarization: 24.02 SS G_CDS: -8.91 Total: 15.12 kcal Atomic # 6 Polarization: 3.79 SS G_CDS: -1.98 Total: 1.81 kcal Atomic # 7 Polarization: -58.29 SS G_CDS: -0.19 Total: -58.48 kcal Atomic # 8 Polarization: -24.50 SS G_CDS: 0.16 Total: -24.34 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -4.71 Total: 15.00 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -35.26 -9.40 -44.65 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001492004271.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.373 kcal (2) G-P(sol) polarization free energy of solvation -35.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds