Wall clock time and date at job start Tue Mar 31 2020 20:06:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09002 * 109.46878 * 2 1 4 4 C 1.53002 * 109.47322 * 240.00233 * 2 1 3 5 5 C 1.53005 * 109.47000 * 175.00023 * 4 2 1 6 6 N 1.46497 * 109.46657 * 179.97438 * 5 4 2 7 7 C 1.34777 * 119.99752 * 180.02562 * 6 5 4 8 8 O 1.21283 * 119.99869 * 359.97438 * 7 6 5 9 9 C 1.50702 * 120.00344 * 179.97438 * 7 6 5 10 10 C 1.53002 * 109.63811 * 294.88662 * 9 7 6 11 11 C 1.53024 * 109.64454 * 174.45929 * 9 7 6 12 12 C 1.50058 * 110.14856 * 289.75261 * 11 9 7 13 13 C 1.29446 * 124.08080 * 342.86971 * 12 11 9 14 14 C 1.50074 * 124.07025 * 0.44288 * 13 12 11 15 15 C 1.53013 * 110.15441 * 342.91057 * 14 13 12 16 16 N 1.46900 * 109.47203 * 119.99930 * 2 1 3 17 17 C 1.46904 * 111.00026 * 275.00088 * 16 2 1 18 18 C 1.50692 * 109.47206 * 179.97438 * 17 16 2 19 19 O 1.21292 * 120.00150 * 0.02562 * 18 17 16 20 20 N 1.34778 * 120.00273 * 180.02562 * 18 17 16 21 21 C 1.37088 * 120.00263 * 180.02562 * 20 18 17 22 22 H 1.08004 * 120.00580 * 359.97438 * 21 20 18 23 23 C 1.38951 * 120.00308 * 179.97438 * 21 20 18 24 24 N 1.31419 * 119.99705 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00463 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.46983 * 90.00480 * 25 23 21 27 27 H 1.48495 * 109.47291 * 210.00223 * 25 23 21 28 28 H 1.48498 * 109.47077 * 330.00768 * 25 23 21 29 29 H 1.09006 * 109.47360 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47396 * 300.00352 * 1 2 3 31 31 H 1.09002 * 109.47454 * 60.00264 * 1 2 3 32 32 H 1.08999 * 109.47051 * 54.99755 * 4 2 1 33 33 H 1.09005 * 109.46829 * 294.99424 * 4 2 1 34 34 H 1.08997 * 109.46994 * 299.99669 * 5 4 2 35 35 H 1.08996 * 109.46940 * 59.99963 * 5 4 2 36 36 H 0.96999 * 120.00530 * 359.97438 * 6 5 4 37 37 H 1.08994 * 109.47372 * 59.99400 * 10 9 7 38 38 H 1.08998 * 109.46809 * 179.97438 * 10 9 7 39 39 H 1.09000 * 109.46929 * 299.99350 * 10 9 7 40 40 H 1.09005 * 109.35167 * 49.96275 * 11 9 7 41 41 H 1.08997 * 109.35321 * 169.68027 * 11 9 7 42 42 H 1.08007 * 117.96431 * 162.88955 * 12 11 9 43 43 H 1.07997 * 117.96631 * 180.46916 * 13 12 11 44 44 H 1.09007 * 109.35266 * 103.10113 * 14 13 12 45 45 H 1.08993 * 109.35794 * 222.68414 * 14 13 12 46 46 H 1.08996 * 109.62443 * 289.71956 * 15 14 13 47 47 H 1.08997 * 109.64232 * 169.09850 * 15 14 13 48 48 H 1.00901 * 111.00167 * 151.05075 * 16 2 1 49 49 H 1.08999 * 109.47358 * 300.00245 * 17 16 2 50 50 H 1.09001 * 109.46711 * 59.99926 * 17 16 2 51 51 H 0.97000 * 119.99739 * 0.02562 * 20 18 17 52 52 H 0.96998 * 119.99722 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5649 -0.6132 -1.3136 6 7 4.0532 -1.3043 -2.5095 7 6 5.3742 -1.3406 -2.7746 8 8 6.1584 -0.8007 -2.0233 9 6 5.8767 -2.0519 -4.0044 10 6 5.5856 -3.5494 -3.8873 11 6 7.3841 -1.8304 -4.1470 12 6 7.6639 -0.4044 -4.5210 13 6 6.7765 0.4075 -4.9996 14 6 5.3415 0.0387 -5.2385 15 6 5.1830 -1.4832 -5.2487 16 7 2.0196 -0.6925 1.1994 17 6 2.0824 0.2226 2.3469 18 6 2.5872 -0.5217 3.5560 19 8 2.8677 -1.6986 3.4702 20 7 2.7272 0.1203 4.7328 21 6 3.1870 -0.5567 5.8326 22 1 3.4367 -1.6047 5.7563 23 6 3.3318 0.1053 7.0456 24 7 3.0274 1.3804 7.1387 25 14 3.9576 -0.8173 8.5444 26 1 5.4386 -0.7240 8.6004 27 1 3.3771 -0.2179 9.7728 28 1 3.5547 -2.2436 8.4516 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.6053 -0.2617 -2.1370 33 1 1.7517 -1.7715 -1.2056 34 1 3.8532 0.4371 -1.3573 35 1 3.9994 -1.0727 -0.4259 36 1 3.4260 -1.7364 -3.1101 37 1 4.5108 -3.7044 -3.7934 38 1 5.9497 -4.0611 -4.7782 39 1 6.0887 -3.9496 -3.0070 40 1 7.8738 -2.0585 -3.2002 41 1 7.7741 -2.4887 -4.9232 42 1 8.6683 -0.0322 -4.3825 43 1 7.0883 1.4125 -5.2426 44 1 4.7234 0.4608 -4.4460 45 1 5.0198 0.4421 -6.1985 46 1 5.6460 -1.8934 -6.1461 47 1 4.1242 -1.7414 -5.2282 48 1 2.9173 -1.1204 1.0288 49 1 2.7587 1.0463 2.1183 50 1 1.0870 0.6163 2.5525 51 1 2.5026 1.0614 4.8015 52 1 3.1289 1.8426 7.9854 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001492027899.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:55 Heat of formation + Delta-G solvation = -77.850274 kcal Electronic energy + Delta-G solvation = -29454.508806 eV Core-core repulsion = 25453.200846 eV Total energy + Delta-G solvation = -4001.307959 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.96182 -38.56308 -37.79793 -36.95745 -34.85534 -33.87086 -33.29457 -31.58122 -31.14966 -30.91365 -28.93588 -26.97436 -26.39161 -24.50007 -23.73606 -23.45841 -22.39670 -20.63692 -19.94736 -19.22132 -18.46448 -17.85190 -16.61406 -16.58203 -16.09920 -15.85291 -15.73452 -15.24827 -15.02127 -14.51495 -14.40800 -14.31768 -13.98736 -13.82605 -13.62902 -13.48220 -13.11604 -13.01466 -12.84002 -12.55329 -12.48349 -12.32254 -12.28276 -12.13594 -11.87328 -11.84802 -11.66707 -11.53587 -11.27733 -11.21839 -11.03377 -10.76596 -10.75020 -10.49798 -10.36398 -10.18113 -9.75407 -9.47232 -9.27856 -9.09281 -8.40624 -8.03918 -7.91966 -6.38027 -3.78618 2.13228 2.56773 2.98086 3.20849 3.29062 3.35267 3.95128 4.12199 4.15459 4.26734 4.33405 4.35145 4.61728 4.73037 4.79605 4.88766 4.94509 4.98513 5.03861 5.11481 5.15803 5.28249 5.28820 5.33772 5.36498 5.40416 5.43715 5.46951 5.51852 5.57035 5.71843 5.73552 5.76962 5.77786 5.83437 5.87252 5.88800 5.93649 6.02859 6.08097 6.27940 6.28710 6.37763 6.41783 6.75721 7.26845 7.34234 7.58879 7.69595 8.10252 8.12851 8.65365 9.21752 9.58417 10.10053 10.79841 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014197 B = 0.002141 C = 0.001991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1971.800162 B =13075.189969 C =14060.133260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.086 3.914 3 H 0.044 0.956 4 C -0.131 4.131 5 C 0.113 3.887 6 N -0.729 5.729 7 C 0.524 3.476 8 O -0.528 6.528 9 C -0.081 4.081 10 C -0.141 4.141 11 C -0.070 4.070 12 C -0.136 4.136 13 C -0.167 4.167 14 C -0.095 4.095 15 C -0.106 4.106 16 N -0.665 5.665 17 C 0.050 3.950 18 C 0.441 3.559 19 O -0.583 6.583 20 N -0.564 5.564 21 C -0.298 4.298 22 H 0.103 0.897 23 C 0.021 3.979 24 N -0.903 5.903 25 Si 0.930 3.070 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.270 1.270 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.052 0.948 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.065 0.935 35 H 0.072 0.928 36 H 0.398 0.602 37 H 0.062 0.938 38 H 0.069 0.931 39 H 0.064 0.936 40 H 0.084 0.916 41 H 0.080 0.920 42 H 0.103 0.897 43 H 0.101 0.899 44 H 0.072 0.928 45 H 0.074 0.926 46 H 0.077 0.923 47 H 0.070 0.930 48 H 0.349 0.651 49 H 0.043 0.957 50 H 0.086 0.914 51 H 0.392 0.608 52 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.816 -2.334 -28.765 28.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.025 4.025 3 H 0.062 0.938 4 C -0.170 4.170 5 C -0.011 4.011 6 N -0.381 5.381 7 C 0.310 3.690 8 O -0.404 6.404 9 C -0.084 4.084 10 C -0.199 4.199 11 C -0.108 4.108 12 C -0.154 4.154 13 C -0.185 4.185 14 C -0.132 4.132 15 C -0.144 4.144 16 N -0.301 5.301 17 C -0.083 4.083 18 C 0.227 3.773 19 O -0.467 6.467 20 N -0.201 5.201 21 C -0.428 4.428 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.544 5.544 25 Si 0.757 3.243 26 H -0.204 1.204 27 H -0.209 1.209 28 H -0.194 1.194 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.093 0.907 33 H 0.099 0.901 34 H 0.084 0.916 35 H 0.090 0.910 36 H 0.232 0.768 37 H 0.081 0.919 38 H 0.088 0.912 39 H 0.084 0.916 40 H 0.102 0.898 41 H 0.098 0.902 42 H 0.121 0.879 43 H 0.119 0.881 44 H 0.090 0.910 45 H 0.092 0.908 46 H 0.095 0.905 47 H 0.088 0.912 48 H 0.171 0.829 49 H 0.061 0.939 50 H 0.104 0.896 51 H 0.225 0.775 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.982 -2.846 -27.909 28.071 hybrid contribution 0.647 0.765 0.473 1.108 sum 1.629 -2.081 -27.436 27.563 Atomic orbital electron populations 1.21782 0.94291 1.02481 1.01113 1.21452 0.96219 0.95795 0.89000 0.93796 1.21974 0.93766 1.02758 0.98459 1.21453 0.94171 0.97443 0.87990 1.45956 1.07551 1.57499 1.27086 1.20382 0.82104 0.79908 0.86597 1.90731 1.55246 1.45015 1.49370 1.20923 0.97481 0.96432 0.93590 1.21842 1.02271 0.92646 1.03095 1.20367 0.93054 0.94851 1.02482 1.21921 0.99407 0.95629 0.98427 1.21904 0.95054 0.99437 1.02129 1.20484 0.95051 0.95542 1.02092 1.21687 1.00299 0.95634 0.96772 1.60212 1.34935 1.32119 1.02785 1.21723 1.01252 0.93957 0.91361 1.19819 0.84858 0.88203 0.84440 1.90520 1.55267 1.16165 1.84767 1.41861 1.57821 1.12444 1.07986 1.19701 1.39820 0.96437 0.86797 0.87949 1.25262 0.97711 0.95799 0.99232 1.69619 1.48745 1.08872 1.27169 0.85857 0.78783 0.79503 0.80154 1.20429 1.20939 1.19415 0.91863 0.92416 0.92919 0.90731 0.90093 0.91639 0.91024 0.76808 0.91904 0.91244 0.91649 0.89771 0.90185 0.87875 0.88118 0.90971 0.90787 0.90455 0.91173 0.82946 0.93866 0.89591 0.77473 0.91914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 9.41 37.15 0.35 -1.16 16 2 C 0.09 1.02 2.65 -67.72 -0.18 0.84 16 3 H 0.04 0.52 7.80 -51.93 -0.40 0.11 16 4 C -0.13 -1.22 4.92 -26.73 -0.13 -1.36 16 5 C 0.11 1.26 5.50 -4.04 -0.02 1.23 16 6 N -0.73 -6.84 5.34 -60.29 -0.32 -7.16 16 7 C 0.52 6.03 4.73 -10.98 -0.05 5.97 16 8 O -0.53 -8.55 15.30 5.55 0.08 -8.46 16 9 C -0.08 -0.66 0.65 -155.44 -0.10 -0.76 16 10 C -0.14 -0.91 8.45 37.16 0.31 -0.60 16 11 C -0.07 -0.62 4.54 -28.18 -0.13 -0.75 16 12 C -0.14 -1.31 9.06 -35.91 -0.33 -1.63 16 13 C -0.17 -1.53 9.62 -35.90 -0.35 -1.88 16 14 C -0.09 -0.72 5.59 -28.18 -0.16 -0.87 16 15 C -0.11 -0.66 4.73 -26.52 -0.13 -0.78 16 16 N -0.67 -10.83 5.93 -107.99 -0.64 -11.47 16 17 C 0.05 0.91 5.96 -4.98 -0.03 0.88 16 18 C 0.44 10.75 7.82 -10.99 -0.09 10.67 16 19 O -0.58 -16.28 15.78 5.55 0.09 -16.20 16 20 N -0.56 -14.73 5.29 -10.97 -0.06 -14.78 16 21 C -0.30 -8.52 9.68 -14.94 -0.14 -8.67 16 22 H 0.10 3.07 7.16 -52.48 -0.38 2.70 16 23 C 0.02 0.59 5.50 -17.46 -0.10 0.49 16 24 N -0.90 -25.07 13.05 55.50 0.72 -24.34 16 25 Si 0.93 21.54 29.55 -169.99 -5.02 16.51 16 26 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 27 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 28 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.68 7.45 -51.93 -0.39 0.29 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.07 1.00 6.43 -51.93 -0.33 0.66 16 36 H 0.40 2.56 7.61 -40.82 -0.31 2.25 16 37 H 0.06 0.34 7.95 -51.93 -0.41 -0.07 16 38 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.08 0.89 7.68 -51.93 -0.40 0.49 16 41 H 0.08 0.54 8.11 -51.93 -0.42 0.12 16 42 H 0.10 0.94 8.06 -52.48 -0.42 0.52 16 43 H 0.10 0.86 8.06 -52.49 -0.42 0.43 16 44 H 0.07 0.63 7.36 -51.93 -0.38 0.25 16 45 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.08 0.41 8.12 -51.93 -0.42 -0.01 16 47 H 0.07 0.32 7.60 -51.93 -0.39 -0.08 16 48 H 0.35 6.03 6.17 -39.29 -0.24 5.79 16 49 H 0.04 0.73 8.06 -51.93 -0.42 0.31 16 50 H 0.09 1.44 7.44 -51.93 -0.39 1.06 16 51 H 0.39 9.77 7.90 -40.82 -0.32 9.44 16 52 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 412.78 15.07 6.22 6.22 Total: -1.00 -34.52 412.78 -9.16 -43.68 By element: Atomic # 1 Polarization: 23.36 SS G_CDS: -8.98 Total: 14.38 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: -1.26 Total: 1.62 kcal Atomic # 7 Polarization: -57.46 SS G_CDS: -0.30 Total: -57.75 kcal Atomic # 8 Polarization: -24.83 SS G_CDS: 0.17 Total: -24.66 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -34.52 -9.16 -43.68 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001492027899.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.170 kcal (2) G-P(sol) polarization free energy of solvation -34.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds