Wall clock time and date at job start Tue Mar 31 2020 20:06:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09002 * 109.46878 * 2 1 4 4 C 1.53002 * 109.47322 * 240.00233 * 2 1 3 5 5 C 1.53005 * 109.47000 * 175.00023 * 4 2 1 6 6 N 1.46497 * 109.46657 * 179.97438 * 5 4 2 7 7 C 1.34777 * 119.99752 * 180.02562 * 6 5 4 8 8 O 1.21283 * 119.99869 * 359.97438 * 7 6 5 9 9 C 1.50702 * 120.00344 * 179.97438 * 7 6 5 10 10 C 1.53002 * 109.63811 * 294.88662 * 9 7 6 11 11 C 1.53024 * 109.64454 * 174.45929 * 9 7 6 12 12 C 1.50058 * 110.14856 * 289.75261 * 11 9 7 13 13 C 1.29446 * 124.08080 * 342.86971 * 12 11 9 14 14 C 1.50074 * 124.07025 * 0.44288 * 13 12 11 15 15 C 1.53013 * 110.15441 * 342.91057 * 14 13 12 16 16 N 1.46900 * 109.47203 * 119.99930 * 2 1 3 17 17 C 1.46904 * 111.00026 * 275.00088 * 16 2 1 18 18 C 1.50692 * 109.47206 * 179.97438 * 17 16 2 19 19 O 1.21292 * 120.00150 * 0.02562 * 18 17 16 20 20 N 1.34778 * 120.00273 * 180.02562 * 18 17 16 21 21 C 1.37088 * 120.00263 * 180.02562 * 20 18 17 22 22 H 1.08004 * 120.00580 * 359.97438 * 21 20 18 23 23 C 1.38951 * 120.00308 * 179.97438 * 21 20 18 24 24 N 1.31419 * 119.99705 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00463 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.46983 * 90.00480 * 25 23 21 27 27 H 1.48495 * 109.47291 * 210.00223 * 25 23 21 28 28 H 1.48498 * 109.47077 * 330.00768 * 25 23 21 29 29 H 1.09006 * 109.47360 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47396 * 300.00352 * 1 2 3 31 31 H 1.09002 * 109.47454 * 60.00264 * 1 2 3 32 32 H 1.08999 * 109.47051 * 54.99755 * 4 2 1 33 33 H 1.09005 * 109.46829 * 294.99424 * 4 2 1 34 34 H 1.08997 * 109.46994 * 299.99669 * 5 4 2 35 35 H 1.08996 * 109.46940 * 59.99963 * 5 4 2 36 36 H 0.96999 * 120.00530 * 359.97438 * 6 5 4 37 37 H 1.08994 * 109.47372 * 59.99400 * 10 9 7 38 38 H 1.08998 * 109.46809 * 179.97438 * 10 9 7 39 39 H 1.09000 * 109.46929 * 299.99350 * 10 9 7 40 40 H 1.09005 * 109.35167 * 49.96275 * 11 9 7 41 41 H 1.08997 * 109.35321 * 169.68027 * 11 9 7 42 42 H 1.08007 * 117.96431 * 162.88955 * 12 11 9 43 43 H 1.07997 * 117.96631 * 180.46916 * 13 12 11 44 44 H 1.09007 * 109.35266 * 103.10113 * 14 13 12 45 45 H 1.08993 * 109.35794 * 222.68414 * 14 13 12 46 46 H 1.08996 * 109.62443 * 289.71956 * 15 14 13 47 47 H 1.08997 * 109.64232 * 169.09850 * 15 14 13 48 48 H 1.00901 * 111.00167 * 151.05075 * 16 2 1 49 49 H 1.08999 * 109.47358 * 300.00245 * 17 16 2 50 50 H 1.09001 * 109.46711 * 59.99926 * 17 16 2 51 51 H 0.97000 * 119.99739 * 0.02562 * 20 18 17 52 52 H 0.96998 * 119.99722 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5649 -0.6132 -1.3136 6 7 4.0532 -1.3043 -2.5095 7 6 5.3742 -1.3406 -2.7746 8 8 6.1584 -0.8007 -2.0233 9 6 5.8767 -2.0519 -4.0044 10 6 5.5856 -3.5494 -3.8873 11 6 7.3841 -1.8304 -4.1470 12 6 7.6639 -0.4044 -4.5210 13 6 6.7765 0.4075 -4.9996 14 6 5.3415 0.0387 -5.2385 15 6 5.1830 -1.4832 -5.2487 16 7 2.0196 -0.6925 1.1994 17 6 2.0824 0.2226 2.3469 18 6 2.5872 -0.5217 3.5560 19 8 2.8677 -1.6986 3.4702 20 7 2.7272 0.1203 4.7328 21 6 3.1870 -0.5567 5.8326 22 1 3.4367 -1.6047 5.7563 23 6 3.3318 0.1053 7.0456 24 7 3.0274 1.3804 7.1387 25 14 3.9576 -0.8173 8.5444 26 1 5.4386 -0.7240 8.6004 27 1 3.3771 -0.2179 9.7728 28 1 3.5547 -2.2436 8.4516 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.6053 -0.2617 -2.1370 33 1 1.7517 -1.7715 -1.2056 34 1 3.8532 0.4371 -1.3573 35 1 3.9994 -1.0727 -0.4259 36 1 3.4260 -1.7364 -3.1101 37 1 4.5108 -3.7044 -3.7934 38 1 5.9497 -4.0611 -4.7782 39 1 6.0887 -3.9496 -3.0070 40 1 7.8738 -2.0585 -3.2002 41 1 7.7741 -2.4887 -4.9232 42 1 8.6683 -0.0322 -4.3825 43 1 7.0883 1.4125 -5.2426 44 1 4.7234 0.4608 -4.4460 45 1 5.0198 0.4421 -6.1985 46 1 5.6460 -1.8934 -6.1461 47 1 4.1242 -1.7414 -5.2282 48 1 2.9173 -1.1204 1.0288 49 1 2.7587 1.0463 2.1183 50 1 1.0870 0.6163 2.5525 51 1 2.5026 1.0614 4.8015 52 1 3.1289 1.8426 7.9854 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001492027899.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:54 Heat of formation + Delta-G solvation = -103.111061 kcal Electronic energy + Delta-G solvation = -29455.604196 eV Core-core repulsion = 25453.200846 eV Total energy + Delta-G solvation = -4002.403349 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.74729 -40.26803 -38.82447 -38.05362 -36.09116 -35.73686 -33.99161 -33.33333 -32.53404 -31.67489 -29.80888 -28.09037 -27.54421 -25.96357 -24.93695 -24.04496 -23.22900 -21.56446 -21.17526 -20.72835 -19.94526 -19.21786 -17.90453 -17.36291 -17.28402 -16.89040 -16.86231 -16.48976 -16.30783 -16.07819 -15.65869 -15.28538 -15.18855 -15.02869 -14.67405 -14.41471 -14.25997 -14.07492 -13.67496 -13.53035 -13.46304 -13.36409 -13.17787 -13.14476 -12.98314 -12.88662 -12.86771 -12.59500 -12.44767 -12.42152 -12.25025 -12.17322 -12.12002 -11.74081 -11.53305 -11.36538 -11.10594 -10.65583 -10.37297 -10.14061 -10.04385 -9.83835 -9.34169 -8.49054 -5.98055 1.35985 1.39398 1.42113 1.52696 1.69199 2.02060 2.17720 2.27342 2.91562 3.17816 3.48955 3.52963 3.63935 3.73345 3.81034 3.95735 4.09202 4.13036 4.22023 4.28215 4.36941 4.42268 4.42904 4.47325 4.53313 4.57105 4.59993 4.67952 4.70979 4.80505 4.87027 4.89465 4.96229 4.99346 5.01348 5.04811 5.10906 5.19071 5.22476 5.26610 5.30042 5.38278 5.44267 5.47367 5.72870 5.89502 6.06758 6.11688 6.38740 6.57305 6.58041 7.09795 7.30458 7.52969 8.08418 8.68513 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014197 B = 0.002141 C = 0.001991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1971.800162 B =13075.189969 C =14060.133260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.082 3.918 3 H 0.050 0.950 4 C -0.116 4.116 5 C 0.118 3.882 6 N -0.713 5.713 7 C 0.518 3.482 8 O -0.585 6.585 9 C -0.077 4.077 10 C -0.139 4.139 11 C -0.072 4.072 12 C -0.155 4.155 13 C -0.174 4.174 14 C -0.097 4.097 15 C -0.101 4.101 16 N -0.679 5.679 17 C 0.064 3.936 18 C 0.436 3.564 19 O -0.624 6.624 20 N -0.573 5.573 21 C -0.335 4.335 22 H 0.078 0.922 23 C -0.014 4.014 24 N -0.920 5.920 25 Si 0.994 3.006 26 H -0.272 1.272 27 H -0.268 1.268 28 H -0.273 1.273 29 H 0.056 0.944 30 H 0.045 0.955 31 H 0.083 0.917 32 H 0.110 0.890 33 H 0.083 0.917 34 H 0.054 0.946 35 H 0.037 0.963 36 H 0.416 0.584 37 H 0.077 0.923 38 H 0.093 0.907 39 H 0.045 0.955 40 H 0.056 0.944 41 H 0.104 0.896 42 H 0.097 0.903 43 H 0.100 0.900 44 H 0.059 0.941 45 H 0.094 0.906 46 H 0.095 0.905 47 H 0.095 0.905 48 H 0.340 0.660 49 H 0.060 0.940 50 H 0.105 0.895 51 H 0.396 0.604 52 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.808 -2.472 -30.982 31.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.028 4.028 3 H 0.068 0.932 4 C -0.154 4.154 5 C -0.007 4.007 6 N -0.366 5.366 7 C 0.306 3.694 8 O -0.465 6.465 9 C -0.080 4.080 10 C -0.197 4.197 11 C -0.109 4.109 12 C -0.173 4.173 13 C -0.192 4.192 14 C -0.133 4.133 15 C -0.138 4.138 16 N -0.313 5.313 17 C -0.068 4.068 18 C 0.224 3.776 19 O -0.510 6.510 20 N -0.211 5.211 21 C -0.464 4.464 22 H 0.096 0.904 23 C -0.213 4.213 24 N -0.561 5.561 25 Si 0.817 3.183 26 H -0.197 1.197 27 H -0.193 1.193 28 H -0.197 1.197 29 H 0.075 0.925 30 H 0.064 0.936 31 H 0.102 0.898 32 H 0.128 0.872 33 H 0.102 0.898 34 H 0.072 0.928 35 H 0.055 0.945 36 H 0.253 0.747 37 H 0.096 0.904 38 H 0.112 0.888 39 H 0.064 0.936 40 H 0.075 0.925 41 H 0.122 0.878 42 H 0.115 0.885 43 H 0.119 0.881 44 H 0.077 0.923 45 H 0.113 0.887 46 H 0.114 0.886 47 H 0.114 0.886 48 H 0.160 0.840 49 H 0.078 0.922 50 H 0.123 0.877 51 H 0.230 0.770 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.696 -2.970 -30.168 30.322 hybrid contribution 1.166 0.850 1.130 1.833 sum 0.470 -2.120 -29.037 29.119 Atomic orbital electron populations 1.21771 0.93027 1.02392 1.02092 1.21641 0.97037 0.95983 0.88092 0.93246 1.21881 0.91978 1.02991 0.98515 1.21280 0.95473 0.96507 0.87394 1.45813 1.07418 1.56751 1.26603 1.21111 0.82140 0.79125 0.87036 1.90707 1.56724 1.47573 1.51478 1.20956 0.96908 0.97257 0.92847 1.21872 1.03205 0.91194 1.03400 1.20394 0.93834 0.94878 1.01815 1.22059 0.99554 0.96474 0.99201 1.22156 0.96146 0.99321 1.01552 1.20547 0.93376 0.96803 1.02620 1.21743 1.01753 0.94325 0.95992 1.60270 1.34494 1.32562 1.03994 1.21579 1.02128 0.93707 0.89403 1.20912 0.83229 0.88019 0.85467 1.90483 1.56664 1.18250 1.85617 1.41939 1.58267 1.12586 1.08264 1.19665 1.42226 0.95949 0.88602 0.90425 1.26071 0.97182 0.96673 1.01419 1.69677 1.48504 1.09712 1.28227 0.84916 0.78437 0.78046 0.76863 1.19708 1.19265 1.19727 0.92464 0.93589 0.89821 0.87190 0.89808 0.92792 0.94494 0.74662 0.90358 0.88829 0.93602 0.92498 0.87778 0.88532 0.88143 0.92262 0.88730 0.88635 0.88608 0.83989 0.92242 0.87658 0.76988 0.91240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.58 9.41 71.98 0.68 -1.90 16 2 C 0.08 1.80 2.65 44.91 0.12 1.92 16 3 H 0.05 1.06 7.80 -2.39 -0.02 1.04 16 4 C -0.12 -1.89 4.92 30.60 0.15 -1.73 16 5 C 0.12 2.58 5.50 86.38 0.48 3.06 16 6 N -0.71 -12.57 5.34 -463.06 -2.47 -15.04 16 7 C 0.52 11.90 4.73 87.66 0.41 12.32 16 8 O -0.59 -20.05 15.30 -3.04 -0.05 -20.10 16 9 C -0.08 -1.15 0.65 -52.79 -0.03 -1.18 16 10 C -0.14 -1.51 8.45 71.98 0.61 -0.90 16 11 C -0.07 -1.28 4.54 29.66 0.13 -1.14 16 12 C -0.15 -3.05 9.06 27.03 0.24 -2.81 16 13 C -0.17 -3.12 9.62 27.04 0.26 -2.86 16 14 C -0.10 -1.26 5.59 29.66 0.17 -1.09 16 15 C -0.10 -0.92 4.73 30.73 0.15 -0.78 16 16 N -0.68 -21.94 5.93 -495.59 -2.94 -24.88 16 17 C 0.06 2.33 5.96 85.55 0.51 2.84 16 18 C 0.44 21.84 7.82 87.65 0.69 22.52 16 19 O -0.62 -36.18 15.78 -3.07 -0.05 -36.23 16 20 N -0.57 -30.75 5.29 -306.99 -1.62 -32.37 16 21 C -0.33 -19.73 9.68 84.04 0.81 -18.92 16 22 H 0.08 4.88 7.16 -2.91 -0.02 4.86 16 23 C -0.01 -0.76 5.50 84.93 0.47 -0.29 16 24 N -0.92 -51.02 13.05 21.66 0.28 -50.74 16 25 Si 0.99 44.24 29.55 68.60 2.03 46.27 16 26 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 27 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 28 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 29 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 30 H 0.04 0.99 7.45 -2.39 -0.02 0.97 16 31 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 34 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.04 1.08 6.43 -2.39 -0.02 1.07 16 36 H 0.42 4.16 7.61 -92.71 -0.71 3.45 16 37 H 0.08 0.61 7.95 -2.39 -0.02 0.59 16 38 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 39 H 0.04 0.68 8.14 -2.39 -0.02 0.67 16 40 H 0.06 1.31 7.68 -2.38 -0.02 1.29 16 41 H 0.10 1.27 8.11 -2.39 -0.02 1.25 16 42 H 0.10 1.91 8.06 -2.91 -0.02 1.89 16 43 H 0.10 1.71 8.06 -2.91 -0.02 1.69 16 44 H 0.06 0.94 7.36 -2.38 -0.02 0.92 16 45 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 46 H 0.10 0.61 8.12 -2.39 -0.02 0.59 16 47 H 0.10 0.42 7.60 -2.39 -0.02 0.40 16 48 H 0.34 12.08 6.17 -89.69 -0.55 11.52 16 49 H 0.06 1.97 8.06 -2.39 -0.02 1.95 16 50 H 0.11 3.43 7.44 -2.39 -0.02 3.41 16 51 H 0.40 20.15 7.90 -92.71 -0.73 19.41 16 52 H 0.28 14.38 8.31 -92.71 -0.77 13.61 16 Total: -1.00 -79.08 412.78 -0.05 -79.13 By element: Atomic # 1 Polarization: 45.97 SS G_CDS: -1.06 Total: 44.90 kcal Atomic # 6 Polarization: 3.21 SS G_CDS: 5.84 Total: 9.05 kcal Atomic # 7 Polarization: -116.27 SS G_CDS: -6.75 Total: -123.03 kcal Atomic # 8 Polarization: -56.23 SS G_CDS: -0.09 Total: -56.32 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Total: -79.08 -0.05 -79.13 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001492027899.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.980 kcal (2) G-P(sol) polarization free energy of solvation -79.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds