Wall clock time and date at job start Tue Mar 31 2020 20:43:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.46796 * 2 1 4 4 C 1.53001 * 109.46508 * 119.99286 * 2 1 3 5 5 N 1.46902 * 109.46534 * 175.00072 * 4 2 1 6 6 C 1.46895 * 111.00321 * 66.04861 * 5 4 2 7 7 C 1.46901 * 110.99790 * 190.00323 * 5 4 2 8 8 C 1.50700 * 109.47260 * 170.00201 * 7 5 4 9 9 O 1.21297 * 120.00154 * 359.97438 * 8 7 5 10 10 N 1.34782 * 120.00006 * 179.97438 * 8 7 5 11 11 C 1.37103 * 119.99844 * 179.97438 * 10 8 7 12 12 H 1.08004 * 119.99520 * 359.97438 * 11 10 8 13 13 C 1.38942 * 119.99967 * 180.02562 * 11 10 8 14 14 N 1.31413 * 120.00008 * 359.97438 * 13 11 10 15 15 Si 1.86806 * 120.00090 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.46963 * 59.99557 * 15 13 11 17 17 H 1.48493 * 109.47007 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.46886 * 299.99966 * 15 13 11 19 19 N 1.46497 * 109.47335 * 239.99136 * 2 1 3 20 20 C 1.34777 * 119.99525 * 84.99977 * 19 2 1 21 21 O 1.21283 * 120.00463 * 0.02562 * 20 19 2 22 22 C 1.50700 * 119.99675 * 179.72583 * 20 19 2 23 23 C 1.50703 * 109.47148 * 180.28037 * 22 20 19 24 24 C 1.29437 * 117.96642 * 94.73423 * 23 22 20 25 25 C 1.50062 * 124.08201 * 180.23927 * 24 23 22 26 26 C 1.53028 * 110.19811 * 343.31709 * 25 24 23 27 27 C 1.53392 * 108.43919 * 49.24475 * 26 25 24 28 28 C 1.50066 * 117.95932 * 274.99742 * 23 22 20 29 29 H 1.08994 * 109.47201 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47273 * 300.00977 * 1 2 3 31 31 H 1.08998 * 109.46811 * 60.00625 * 1 2 3 32 32 H 1.08995 * 109.47553 * 294.99926 * 4 2 1 33 33 H 1.08998 * 109.47075 * 55.00372 * 4 2 1 34 34 H 1.09006 * 109.47304 * 59.99628 * 6 5 4 35 35 H 1.08998 * 109.47567 * 179.97438 * 6 5 4 36 36 H 1.09004 * 109.47080 * 300.00076 * 6 5 4 37 37 H 1.09007 * 109.46855 * 289.99428 * 7 5 4 38 38 H 1.08991 * 109.47644 * 49.99707 * 7 5 4 39 39 H 0.96994 * 119.99960 * 359.97438 * 10 8 7 40 40 H 0.97001 * 119.99768 * 180.02562 * 14 13 11 41 41 H 0.97000 * 120.00580 * 265.00723 * 19 2 1 42 42 H 1.09009 * 109.47352 * 300.27556 * 22 20 19 43 43 H 1.08998 * 109.47585 * 60.27844 * 22 20 19 44 44 H 1.08004 * 117.96292 * 0.46618 * 24 23 22 45 45 H 1.09004 * 109.48882 * 222.99851 * 25 24 23 46 46 H 1.08993 * 109.18184 * 103.44161 * 25 24 23 47 47 H 1.09001 * 109.64240 * 289.56635 * 26 25 24 48 48 H 1.08998 * 109.81483 * 169.03379 * 26 25 24 49 49 H 1.09000 * 109.64534 * 172.88017 * 27 26 25 50 50 H 1.09006 * 109.64012 * 52.25141 * 27 26 25 51 51 H 1.08999 * 109.36065 * 283.05470 * 28 23 22 52 52 H 1.09005 * 109.36124 * 42.77968 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7211 1.2494 5 7 3.5040 -0.8265 1.1906 6 6 4.1310 0.4994 1.2721 7 6 4.0106 -1.7142 2.2457 8 6 5.4723 -1.9936 2.0082 9 8 6.0365 -1.5020 1.0536 10 7 6.1528 -2.7897 2.8566 11 6 7.4825 -3.0443 2.6402 12 1 7.9845 -2.6072 1.7897 13 6 8.1839 -3.8654 3.5145 14 7 7.5729 -4.3976 4.5490 15 14 9.9954 -4.2129 3.2193 16 1 10.7540 -2.9363 3.2394 17 1 10.5077 -5.1095 4.2864 18 1 10.1647 -4.8684 1.8976 19 7 2.0185 -0.6908 -1.1960 20 6 2.1472 -0.0185 -2.3570 21 8 1.8591 1.1584 -2.4116 22 6 2.6554 -0.7275 -3.5859 23 6 2.7114 0.2421 -4.7382 24 6 3.8351 0.8391 -4.9751 25 6 4.0432 1.8318 -6.0811 26 6 2.9123 1.7250 -7.1065 27 6 1.5742 1.7460 -6.3570 28 6 1.4591 0.4598 -5.5360 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5140 0.8898 31 1 -0.3633 0.5137 -0.8900 32 1 1.7516 -0.1581 2.1370 33 1 1.6053 -1.7197 1.2953 34 1 3.8524 0.9760 2.2120 35 1 5.2148 0.3922 1.2267 36 1 3.7911 1.1139 0.4384 37 1 3.8857 -1.2334 3.2160 38 1 3.4544 -2.6514 2.2303 39 1 5.7018 -3.1825 3.6202 40 1 8.0626 -4.9706 5.1596 41 1 2.2491 -1.6319 -1.1524 42 1 3.6539 -1.1197 -3.3923 43 1 1.9842 -1.5494 -3.8349 44 1 4.6765 0.6056 -4.3395 45 1 4.9961 1.6345 -6.5723 46 1 4.0567 2.8376 -5.6616 47 1 3.0072 0.7912 -7.6607 48 1 2.9589 2.5672 -7.7969 49 1 0.7539 1.7983 -7.0730 50 1 1.5400 2.6093 -5.6924 51 1 1.3069 -0.3851 -6.2075 52 1 0.6088 0.5408 -4.8588 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498248779.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:54 Heat of formation + Delta-G solvation = -71.812126 kcal Electronic energy + Delta-G solvation = -29585.335777 eV Core-core repulsion = 25584.289651 eV Total energy + Delta-G solvation = -4001.046126 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.03240 -38.80021 -38.25437 -36.88363 -34.65017 -33.76995 -33.00679 -31.27002 -31.02011 -30.82927 -28.00531 -27.33349 -26.90302 -24.81738 -23.41452 -22.81922 -21.98834 -20.72036 -20.19039 -19.15973 -17.85530 -17.64871 -17.05625 -16.40206 -16.01668 -15.65729 -15.37790 -14.92324 -14.78809 -14.66379 -14.44400 -14.02332 -13.96359 -13.63425 -13.56863 -13.51979 -13.34047 -12.91077 -12.67899 -12.56358 -12.31058 -12.21089 -12.08771 -12.01967 -11.81775 -11.66090 -11.49924 -11.36218 -11.23712 -10.93144 -10.91993 -10.70585 -10.58077 -10.45502 -10.31892 -10.22831 -9.76745 -9.48144 -8.92241 -8.77473 -8.46648 -7.99599 -7.88081 -6.43150 -3.83991 2.17254 2.81031 3.18704 3.24588 3.28767 3.39665 3.88825 3.95414 4.23018 4.50272 4.59381 4.75907 4.78225 4.95357 5.04146 5.09526 5.11051 5.18357 5.21671 5.27063 5.27987 5.34391 5.43521 5.47395 5.49003 5.52001 5.61040 5.64084 5.70108 5.71004 5.73064 5.79685 5.84707 5.92764 5.94374 5.96921 5.98160 6.07487 6.09937 6.19971 6.26523 6.56742 6.61477 6.62941 6.98440 7.23610 7.34720 7.53549 7.68969 8.04753 8.40395 8.60439 9.16756 9.53026 10.04989 10.74486 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.012658 B = 0.002381 C = 0.002080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2211.509218 B =11757.800434 C =13456.034499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.148 3.852 3 H 0.086 0.914 4 C 0.042 3.958 5 N -0.514 5.514 6 C 0.022 3.978 7 C 0.045 3.955 8 C 0.444 3.556 9 O -0.577 6.577 10 N -0.565 5.565 11 C -0.299 4.299 12 H 0.102 0.898 13 C 0.022 3.978 14 N -0.902 5.902 15 Si 0.930 3.070 16 H -0.274 1.274 17 H -0.284 1.284 18 H -0.273 1.273 19 N -0.708 5.708 20 C 0.519 3.481 21 O -0.544 6.544 22 C -0.112 4.112 23 C -0.101 4.101 24 C -0.147 4.147 25 C -0.087 4.087 26 C -0.120 4.120 27 C -0.118 4.118 28 C -0.077 4.077 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.045 0.955 33 H 0.078 0.922 34 H 0.013 0.987 35 H 0.095 0.905 36 H 0.060 0.940 37 H 0.047 0.953 38 H 0.087 0.913 39 H 0.392 0.608 40 H 0.272 0.728 41 H 0.404 0.596 42 H 0.101 0.899 43 H 0.094 0.906 44 H 0.103 0.897 45 H 0.069 0.931 46 H 0.072 0.928 47 H 0.062 0.938 48 H 0.062 0.938 49 H 0.061 0.939 50 H 0.066 0.934 51 H 0.068 0.932 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.453 6.973 -14.221 22.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.042 3.958 3 H 0.104 0.896 4 C -0.087 4.087 5 N -0.238 5.238 6 C -0.126 4.126 7 C -0.087 4.087 8 C 0.229 3.771 9 O -0.461 6.461 10 N -0.201 5.201 11 C -0.428 4.428 12 H 0.120 0.880 13 C -0.179 4.179 14 N -0.544 5.544 15 Si 0.757 3.243 16 H -0.199 1.199 17 H -0.210 1.210 18 H -0.199 1.199 19 N -0.359 5.359 20 C 0.305 3.695 21 O -0.422 6.422 22 C -0.151 4.151 23 C -0.101 4.101 24 C -0.165 4.165 25 C -0.124 4.124 26 C -0.157 4.157 27 C -0.156 4.156 28 C -0.114 4.114 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.063 0.937 33 H 0.097 0.903 34 H 0.032 0.968 35 H 0.114 0.886 36 H 0.079 0.921 37 H 0.065 0.935 38 H 0.105 0.895 39 H 0.225 0.775 40 H 0.082 0.918 41 H 0.239 0.761 42 H 0.119 0.881 43 H 0.113 0.887 44 H 0.121 0.879 45 H 0.088 0.912 46 H 0.090 0.910 47 H 0.081 0.919 48 H 0.080 0.920 49 H 0.080 0.920 50 H 0.085 0.915 51 H 0.086 0.914 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -15.062 7.809 -15.175 22.763 hybrid contribution 0.582 -0.713 1.518 1.775 sum -14.481 7.096 -13.657 21.132 Atomic orbital electron populations 1.22144 0.95297 1.02080 1.02437 1.20897 0.93114 0.97636 0.84116 0.89610 1.22501 0.89232 1.00819 0.96107 1.61567 1.03123 1.12229 1.46858 1.22552 1.02988 0.88504 0.98551 1.21881 0.96373 0.97528 0.92871 1.19728 0.87677 0.84168 0.85511 1.90491 1.69990 1.54251 1.31344 1.41868 1.10386 1.42886 1.24989 1.19634 0.84978 1.27200 1.10999 0.88007 1.25254 1.00475 0.96711 0.95501 1.69603 1.37493 1.32930 1.14338 0.85927 0.82020 0.78402 0.77930 1.19936 1.20989 1.19888 1.45828 1.66837 1.14360 1.08863 1.20501 0.77286 0.87289 0.84395 1.90672 1.50378 1.15925 1.85216 1.20855 1.03852 0.98438 0.91990 1.20235 0.95298 0.98465 0.96139 1.21900 0.97695 0.98002 0.98892 1.20397 0.98586 0.98591 0.94868 1.21599 0.94932 1.01722 0.97470 1.21571 0.97090 0.98251 0.98643 1.20313 0.95799 0.97666 0.97606 0.92406 0.91820 0.91978 0.93669 0.90326 0.96805 0.88643 0.92123 0.93515 0.89469 0.77531 0.91836 0.76108 0.88084 0.88737 0.87864 0.91243 0.90969 0.91906 0.91970 0.92024 0.91523 0.91379 0.91135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.55 9.48 37.16 0.35 -1.20 16 2 C 0.15 1.73 2.35 -67.93 -0.16 1.57 16 3 H 0.09 1.20 6.23 -51.93 -0.32 0.87 16 4 C 0.04 0.50 4.52 -3.82 -0.02 0.48 16 5 N -0.51 -8.04 4.22 -244.37 -1.03 -9.07 16 6 C 0.02 0.36 8.96 60.06 0.54 0.90 16 7 C 0.04 0.76 5.45 -4.98 -0.03 0.73 16 8 C 0.44 10.15 7.47 -10.98 -0.08 10.07 16 9 O -0.58 -15.09 13.91 5.54 0.08 -15.02 16 10 N -0.56 -14.01 5.29 -10.96 -0.06 -14.06 16 11 C -0.30 -8.20 9.68 -14.93 -0.14 -8.34 16 12 H 0.10 2.93 7.16 -52.48 -0.38 2.56 16 13 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 14 N -0.90 -24.28 13.05 55.50 0.72 -23.55 16 15 Si 0.93 20.89 29.55 -169.99 -5.02 15.87 16 16 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 17 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 18 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 19 N -0.71 -8.43 4.80 -53.80 -0.26 -8.69 16 20 C 0.52 6.87 7.79 -10.98 -0.09 6.78 16 21 O -0.54 -8.97 15.70 5.55 0.09 -8.88 16 22 C -0.11 -1.20 5.71 -29.03 -0.17 -1.37 16 23 C -0.10 -1.14 4.33 -100.94 -0.44 -1.58 16 24 C -0.15 -1.70 9.37 -35.90 -0.34 -2.04 16 25 C -0.09 -0.85 6.11 -28.18 -0.17 -1.02 16 26 C -0.12 -1.02 6.01 -26.51 -0.16 -1.18 16 27 C -0.12 -1.08 6.01 -26.52 -0.16 -1.24 16 28 C -0.08 -0.76 5.80 -28.18 -0.16 -0.92 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.05 0.50 8.12 -51.93 -0.42 0.08 16 33 H 0.08 0.81 7.93 -51.93 -0.41 0.40 16 34 H 0.01 0.21 8.14 -51.93 -0.42 -0.22 16 35 H 0.10 1.93 5.82 -51.93 -0.30 1.63 16 36 H 0.06 0.98 6.58 -51.93 -0.34 0.64 16 37 H 0.05 0.74 8.12 -51.93 -0.42 0.32 16 38 H 0.09 1.31 7.93 -51.93 -0.41 0.89 16 39 H 0.39 9.30 7.90 -40.82 -0.32 8.98 16 40 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 41 H 0.40 4.39 8.60 -40.82 -0.35 4.04 16 42 H 0.10 1.09 7.80 -51.92 -0.41 0.69 16 43 H 0.09 0.80 8.11 -51.93 -0.42 0.38 16 44 H 0.10 1.26 7.74 -52.48 -0.41 0.85 16 45 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.06 0.51 8.12 -51.93 -0.42 0.09 16 48 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 49 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 50 H 0.07 0.70 8.12 -51.93 -0.42 0.28 16 51 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 52 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 416.42 15.07 6.28 6.28 Total: -1.00 -32.07 416.42 -9.65 -41.71 By element: Atomic # 1 Polarization: 22.41 SS G_CDS: -9.12 Total: 13.29 kcal Atomic # 6 Polarization: 3.45 SS G_CDS: -1.31 Total: 2.13 kcal Atomic # 7 Polarization: -54.75 SS G_CDS: -0.62 Total: -55.37 kcal Atomic # 8 Polarization: -24.07 SS G_CDS: 0.16 Total: -23.90 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -32.07 -9.65 -41.71 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498248779.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.099 kcal (2) G-P(sol) polarization free energy of solvation -32.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds