Wall clock time and date at job start Tue Mar 31 2020 20:43:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09000 * 109.46621 * 2 1 4 4 C 1.53000 * 109.47161 * 240.00145 * 2 1 3 5 5 N 1.46902 * 109.46936 * 185.00001 * 4 2 1 6 6 C 1.46905 * 110.99909 * 293.95289 * 5 4 2 7 7 C 1.46900 * 110.99950 * 170.00059 * 5 4 2 8 8 C 1.50694 * 109.47048 * 190.00309 * 7 5 4 9 9 O 1.21291 * 120.00488 * 359.97438 * 8 7 5 10 10 N 1.34777 * 119.99870 * 180.02562 * 8 7 5 11 11 C 1.37102 * 120.00110 * 179.97438 * 10 8 7 12 12 H 1.08003 * 120.00026 * 0.02562 * 11 10 8 13 13 C 1.38947 * 120.00213 * 179.97438 * 11 10 8 14 14 N 1.31409 * 120.00139 * 180.02562 * 13 11 10 15 15 Si 1.86807 * 119.99962 * 0.02562 * 13 11 10 16 16 H 1.48496 * 109.46661 * 89.99907 * 15 13 11 17 17 H 1.48498 * 109.47019 * 209.99799 * 15 13 11 18 18 H 1.48496 * 109.46922 * 329.99946 * 15 13 11 19 19 N 1.46495 * 109.46765 * 119.99905 * 2 1 3 20 20 C 1.34773 * 120.00226 * 274.99939 * 19 2 1 21 21 O 1.21284 * 120.00034 * 0.02562 * 20 19 2 22 22 C 1.50701 * 120.00124 * 180.02562 * 20 19 2 23 23 C 1.52997 * 109.63871 * 294.56938 * 22 20 19 24 24 C 1.53019 * 109.64274 * 174.15298 * 22 20 19 25 25 C 1.50548 * 109.88872 * 289.57758 * 24 22 20 26 26 C 1.29446 * 124.16230 * 343.00036 * 25 24 22 27 27 C 1.50073 * 124.06932 * 0.41064 * 26 25 24 28 28 C 1.53018 * 110.14982 * 342.87081 * 27 26 25 29 29 H 1.08995 * 109.46933 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47043 * 299.99842 * 1 2 3 31 31 H 1.09002 * 109.46476 * 60.00119 * 1 2 3 32 32 H 1.08997 * 109.46900 * 64.99843 * 4 2 1 33 33 H 1.09000 * 109.46920 * 304.99828 * 4 2 1 34 34 H 1.09000 * 109.46628 * 60.00002 * 6 5 4 35 35 H 1.08997 * 109.47134 * 299.99977 * 6 5 4 36 36 H 1.09001 * 109.46873 * 180.02562 * 6 5 4 37 37 H 1.09007 * 109.46852 * 310.00201 * 7 5 4 38 38 H 1.08994 * 109.47167 * 69.99858 * 7 5 4 39 39 H 0.97000 * 120.00195 * 359.97438 * 10 8 7 40 40 H 0.96999 * 119.99957 * 180.02562 * 14 13 11 41 41 H 0.97000 * 119.99649 * 95.00600 * 19 2 1 42 42 H 1.09006 * 109.47344 * 60.00397 * 23 22 20 43 43 H 1.09000 * 109.47533 * 179.97438 * 23 22 20 44 44 H 1.08994 * 109.47734 * 300.00127 * 23 22 20 45 45 H 1.08996 * 109.36324 * 49.95712 * 24 22 20 46 46 H 1.09000 * 109.36029 * 169.54270 * 24 22 20 47 47 H 1.08006 * 117.87835 * 162.91962 * 25 24 22 48 48 H 1.07998 * 117.96805 * 180.43356 * 26 25 24 49 49 H 1.08998 * 109.35537 * 222.65906 * 27 26 25 50 50 H 1.09006 * 109.35531 * 103.08022 * 27 26 25 51 51 H 1.09008 * 109.64018 * 289.75038 * 28 27 26 52 52 H 1.09002 * 109.81544 * 169.22768 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 7 3.5041 -0.8266 -1.1904 6 6 4.1311 0.4994 -1.2719 7 6 4.0109 -1.7143 -2.2455 8 6 5.4725 -1.9937 -2.0077 9 8 6.0368 -1.5014 -1.0536 10 7 6.1530 -2.7898 -2.8560 11 6 7.4830 -3.0436 -2.6401 12 1 7.9852 -2.6059 -1.7900 13 6 8.1844 -3.8647 -3.5143 14 7 9.4590 -4.1084 -3.3070 15 14 7.3157 -4.6224 -4.9842 16 1 7.4248 -3.7078 -6.1490 17 1 7.9483 -5.9243 -5.3161 18 1 5.8835 -4.8373 -4.6560 19 7 2.0183 -0.6906 1.1962 20 6 2.1470 -0.0183 2.3571 21 8 1.8582 1.1584 2.4117 22 6 2.6498 -0.7286 3.5875 23 6 1.6400 -1.7960 4.0137 24 6 2.8412 0.2805 4.7218 25 6 4.0157 1.1729 4.4207 26 6 4.9259 0.9042 3.5403 27 6 4.9333 -0.3317 2.6891 28 6 4.0013 -1.3884 3.2858 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3632 0.5138 -0.8900 32 1 1.7517 -0.1583 -2.1369 33 1 1.6055 -1.7198 -1.2951 34 1 3.7911 1.1139 -0.4383 35 1 3.8525 0.9759 -2.2118 36 1 5.2149 0.3923 -1.2265 37 1 3.4546 -2.6516 -2.2299 38 1 3.8859 -1.2337 -3.2157 39 1 5.7020 -3.1832 -3.6193 40 1 9.9488 -4.6813 -3.9175 41 1 2.2491 -1.6317 1.1526 42 1 1.5114 -2.5174 3.2067 43 1 2.0065 -2.3083 4.9033 44 1 0.6830 -1.3234 4.2345 45 1 1.9395 0.8842 4.8244 46 1 3.0236 -0.2541 5.6540 47 1 4.1031 2.0964 4.9739 48 1 5.7300 1.6134 3.4106 49 1 5.9467 -0.7301 2.6396 50 1 4.5969 -0.0797 1.6833 51 1 4.4325 -1.7786 4.2078 52 1 3.8612 -2.2019 2.5739 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498295488.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:01 Heat of formation + Delta-G solvation = -56.248091 kcal Electronic energy + Delta-G solvation = -31328.366393 eV Core-core repulsion = 27327.995174 eV Total energy + Delta-G solvation = -4000.371218 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.70750 -38.91184 -37.76748 -36.66481 -34.72130 -33.83965 -33.05557 -31.68852 -31.12346 -30.19868 -28.20234 -26.97100 -26.67165 -24.81978 -23.71087 -22.97048 -22.31498 -20.57124 -19.83017 -19.35460 -18.31065 -18.08753 -16.41992 -16.30020 -16.06735 -15.54083 -15.40673 -14.95498 -14.77467 -14.71995 -14.23017 -14.07678 -13.85298 -13.58563 -13.36217 -13.26086 -12.94683 -12.76749 -12.69995 -12.42321 -12.37746 -12.23724 -12.13051 -12.01295 -11.95540 -11.92394 -11.73512 -11.49091 -11.37349 -11.32100 -11.03796 -10.75540 -10.61779 -10.33054 -10.08478 -9.99404 -9.54959 -9.47563 -8.96471 -8.71302 -8.58264 -8.19652 -7.99433 -6.32705 -3.83998 2.52659 2.84755 3.00021 3.04512 3.13157 3.28079 3.72526 3.87549 4.08376 4.52102 4.62444 4.70497 4.73239 4.77723 5.04090 5.13031 5.17462 5.23537 5.23974 5.36942 5.37912 5.43224 5.44381 5.47487 5.57057 5.57664 5.61062 5.62808 5.69266 5.73482 5.81201 5.84685 5.86496 5.91884 5.94874 5.96718 6.06603 6.09166 6.22533 6.31976 6.43527 6.53285 6.63134 6.80668 7.12132 7.16810 7.25317 7.56892 7.70079 8.13176 8.42748 8.58706 8.94038 9.41119 9.82233 10.80450 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014257 B = 0.003185 C = 0.002848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1963.507303 B = 8787.729850 C = 9828.618691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.147 3.853 3 H 0.086 0.914 4 C 0.042 3.958 5 N -0.512 5.512 6 C 0.020 3.980 7 C 0.042 3.958 8 C 0.453 3.547 9 O -0.555 6.555 10 N -0.592 5.592 11 C -0.303 4.303 12 H 0.120 0.880 13 C 0.041 3.959 14 N -0.882 5.882 15 Si 0.879 3.121 16 H -0.272 1.272 17 H -0.277 1.277 18 H -0.270 1.270 19 N -0.706 5.706 20 C 0.533 3.467 21 O -0.545 6.545 22 C -0.082 4.082 23 C -0.139 4.139 24 C -0.063 4.063 25 C -0.154 4.154 26 C -0.149 4.149 27 C -0.097 4.097 28 C -0.102 4.102 29 H 0.056 0.944 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.045 0.955 33 H 0.078 0.922 34 H 0.062 0.938 35 H 0.014 0.986 36 H 0.096 0.904 37 H 0.088 0.912 38 H 0.047 0.953 39 H 0.369 0.631 40 H 0.273 0.727 41 H 0.403 0.597 42 H 0.061 0.939 43 H 0.067 0.933 44 H 0.058 0.942 45 H 0.077 0.923 46 H 0.074 0.926 47 H 0.097 0.903 48 H 0.098 0.902 49 H 0.077 0.923 50 H 0.088 0.912 51 H 0.070 0.930 52 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.781 4.398 8.854 21.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.042 3.958 3 H 0.104 0.896 4 C -0.086 4.086 5 N -0.235 5.235 6 C -0.128 4.128 7 C -0.090 4.090 8 C 0.239 3.761 9 O -0.437 6.437 10 N -0.232 5.232 11 C -0.432 4.432 12 H 0.137 0.863 13 C -0.161 4.161 14 N -0.522 5.522 15 Si 0.705 3.295 16 H -0.197 1.197 17 H -0.202 1.202 18 H -0.195 1.195 19 N -0.357 5.357 20 C 0.319 3.681 21 O -0.422 6.422 22 C -0.085 4.085 23 C -0.196 4.196 24 C -0.100 4.100 25 C -0.172 4.172 26 C -0.167 4.167 27 C -0.134 4.134 28 C -0.140 4.140 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.063 0.937 33 H 0.096 0.904 34 H 0.081 0.919 35 H 0.032 0.968 36 H 0.115 0.885 37 H 0.106 0.894 38 H 0.065 0.935 39 H 0.202 0.798 40 H 0.084 0.916 41 H 0.238 0.762 42 H 0.080 0.920 43 H 0.086 0.914 44 H 0.077 0.923 45 H 0.095 0.905 46 H 0.093 0.907 47 H 0.116 0.884 48 H 0.116 0.884 49 H 0.096 0.904 50 H 0.106 0.894 51 H 0.089 0.911 52 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -18.261 5.274 9.914 21.438 hybrid contribution -0.545 -0.756 -2.225 2.412 sum -18.806 4.518 7.689 20.814 Atomic orbital electron populations 1.22145 0.95342 1.02043 1.02429 1.20888 0.93114 0.97657 0.84138 0.89589 1.22504 0.89092 1.00817 0.96227 1.61568 1.03208 1.12225 1.46537 1.22583 1.03020 0.88455 0.98698 1.21917 0.96191 0.97745 0.93131 1.19617 0.87553 0.83715 0.85248 1.90530 1.69726 1.52940 1.30500 1.42221 1.10918 1.44807 1.25226 1.19411 0.83025 1.28006 1.12746 0.86276 1.25029 0.95554 0.97436 0.98123 1.69618 1.07523 1.37359 1.37687 0.86688 0.79497 0.79956 0.83322 1.19731 1.20215 1.19527 1.45787 1.66884 1.14257 1.08764 1.20279 0.76481 0.86948 0.84346 1.90651 1.50465 1.15925 1.85169 1.20916 0.96924 0.96591 0.94049 1.21824 0.98205 0.97524 1.02069 1.20364 0.97806 0.95691 0.96158 1.21878 0.95875 0.99480 0.99999 1.22060 0.98853 0.98602 0.97221 1.20498 1.00528 0.92974 0.99356 1.21641 0.92901 0.97889 1.01589 0.92445 0.91944 0.91889 0.93666 0.90366 0.91948 0.96764 0.88527 0.89409 0.93459 0.79820 0.91638 0.76228 0.92008 0.91423 0.92273 0.90456 0.90746 0.88445 0.88358 0.90442 0.89369 0.91102 0.90864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.48 9.48 37.16 0.35 -1.12 16 2 C 0.15 1.63 2.35 -67.93 -0.16 1.47 16 3 H 0.09 1.15 6.23 -51.93 -0.32 0.83 16 4 C 0.04 0.45 4.52 -3.82 -0.02 0.44 16 5 N -0.51 -7.28 4.22 -244.37 -1.03 -8.31 16 6 C 0.02 0.31 8.96 60.07 0.54 0.85 16 7 C 0.04 0.64 5.45 -4.98 -0.03 0.61 16 8 C 0.45 9.64 7.47 -10.99 -0.08 9.56 16 9 O -0.56 -13.78 13.91 5.55 0.08 -13.70 16 10 N -0.59 -13.50 5.09 -10.96 -0.06 -13.56 16 11 C -0.30 -8.32 10.16 -14.93 -0.15 -8.47 16 12 H 0.12 3.75 7.39 -52.48 -0.39 3.36 16 13 C 0.04 1.11 5.50 -17.47 -0.10 1.02 16 14 N -0.88 -25.38 13.96 55.50 0.77 -24.61 16 15 Si 0.88 18.97 27.74 -169.99 -4.71 14.25 16 16 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 17 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 18 H -0.27 -5.27 6.52 56.52 0.37 -4.90 16 19 N -0.71 -8.09 4.56 -53.80 -0.25 -8.33 16 20 C 0.53 6.95 4.69 -10.99 -0.05 6.90 16 21 O -0.54 -8.87 14.98 5.55 0.08 -8.79 16 22 C -0.08 -0.90 0.65 -155.45 -0.10 -1.00 16 23 C -0.14 -1.17 8.44 37.16 0.31 -0.86 16 24 C -0.06 -0.71 4.58 -27.95 -0.13 -0.83 16 25 C -0.15 -1.96 9.08 -35.67 -0.32 -2.29 16 26 C -0.15 -2.06 9.62 -35.90 -0.35 -2.40 16 27 C -0.10 -1.39 5.59 -28.18 -0.16 -1.54 16 28 C -0.10 -1.20 4.71 -26.52 -0.13 -1.33 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.05 0.45 8.12 -51.93 -0.42 0.03 16 33 H 0.08 0.73 7.93 -51.93 -0.41 0.31 16 34 H 0.06 0.95 6.58 -51.93 -0.34 0.61 16 35 H 0.01 0.20 8.14 -51.93 -0.42 -0.23 16 36 H 0.10 1.83 5.82 -51.93 -0.30 1.53 16 37 H 0.09 1.16 7.93 -51.92 -0.41 0.74 16 38 H 0.05 0.66 8.12 -51.93 -0.42 0.24 16 39 H 0.37 7.43 5.76 -40.82 -0.24 7.19 16 40 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 41 H 0.40 4.31 7.74 -40.82 -0.32 4.00 16 42 H 0.06 0.47 7.97 -51.93 -0.41 0.06 16 43 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.08 0.91 7.68 -51.93 -0.40 0.51 16 46 H 0.07 0.70 8.11 -51.93 -0.42 0.27 16 47 H 0.10 1.14 8.06 -52.48 -0.42 0.72 16 48 H 0.10 1.32 8.06 -52.49 -0.42 0.89 16 49 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 50 H 0.09 1.46 7.34 -51.93 -0.38 1.08 16 51 H 0.07 0.77 8.13 -51.92 -0.42 0.34 16 52 H 0.07 0.85 7.58 -51.93 -0.39 0.46 16 LS Contribution 406.31 15.07 6.12 6.12 Total: -1.00 -32.15 406.31 -8.53 -40.68 By element: Atomic # 1 Polarization: 24.22 SS G_CDS: -8.98 Total: 15.25 kcal Atomic # 6 Polarization: 1.56 SS G_CDS: -0.56 Total: 1.00 kcal Atomic # 7 Polarization: -54.25 SS G_CDS: -0.56 Total: -54.81 kcal Atomic # 8 Polarization: -22.65 SS G_CDS: 0.16 Total: -22.49 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -4.71 Total: 14.25 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -32.15 -8.53 -40.68 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498295488.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.567 kcal (2) G-P(sol) polarization free energy of solvation -32.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds