Wall clock time and date at job start Tue Mar 31 2020 20:42:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09000 * 109.46621 * 2 1 4 4 C 1.53000 * 109.47161 * 240.00145 * 2 1 3 5 5 N 1.46902 * 109.46936 * 185.00001 * 4 2 1 6 6 C 1.46905 * 110.99909 * 293.95289 * 5 4 2 7 7 C 1.46900 * 110.99950 * 170.00059 * 5 4 2 8 8 C 1.50694 * 109.47048 * 190.00309 * 7 5 4 9 9 O 1.21291 * 120.00488 * 359.97438 * 8 7 5 10 10 N 1.34777 * 119.99870 * 180.02562 * 8 7 5 11 11 C 1.37102 * 120.00110 * 179.97438 * 10 8 7 12 12 H 1.08003 * 120.00026 * 0.02562 * 11 10 8 13 13 C 1.38947 * 120.00213 * 179.97438 * 11 10 8 14 14 N 1.31409 * 120.00139 * 180.02562 * 13 11 10 15 15 Si 1.86807 * 119.99962 * 0.02562 * 13 11 10 16 16 H 1.48496 * 109.46661 * 89.99907 * 15 13 11 17 17 H 1.48498 * 109.47019 * 209.99799 * 15 13 11 18 18 H 1.48496 * 109.46922 * 329.99946 * 15 13 11 19 19 N 1.46495 * 109.46765 * 119.99905 * 2 1 3 20 20 C 1.34773 * 120.00226 * 274.99939 * 19 2 1 21 21 O 1.21284 * 120.00034 * 0.02562 * 20 19 2 22 22 C 1.50701 * 120.00124 * 180.02562 * 20 19 2 23 23 C 1.52997 * 109.63871 * 294.56938 * 22 20 19 24 24 C 1.53019 * 109.64274 * 174.15298 * 22 20 19 25 25 C 1.50548 * 109.88872 * 289.57758 * 24 22 20 26 26 C 1.29446 * 124.16230 * 343.00036 * 25 24 22 27 27 C 1.50073 * 124.06932 * 0.41064 * 26 25 24 28 28 C 1.53018 * 110.14982 * 342.87081 * 27 26 25 29 29 H 1.08995 * 109.46933 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47043 * 299.99842 * 1 2 3 31 31 H 1.09002 * 109.46476 * 60.00119 * 1 2 3 32 32 H 1.08997 * 109.46900 * 64.99843 * 4 2 1 33 33 H 1.09000 * 109.46920 * 304.99828 * 4 2 1 34 34 H 1.09000 * 109.46628 * 60.00002 * 6 5 4 35 35 H 1.08997 * 109.47134 * 299.99977 * 6 5 4 36 36 H 1.09001 * 109.46873 * 180.02562 * 6 5 4 37 37 H 1.09007 * 109.46852 * 310.00201 * 7 5 4 38 38 H 1.08994 * 109.47167 * 69.99858 * 7 5 4 39 39 H 0.97000 * 120.00195 * 359.97438 * 10 8 7 40 40 H 0.96999 * 119.99957 * 180.02562 * 14 13 11 41 41 H 0.97000 * 119.99649 * 95.00600 * 19 2 1 42 42 H 1.09006 * 109.47344 * 60.00397 * 23 22 20 43 43 H 1.09000 * 109.47533 * 179.97438 * 23 22 20 44 44 H 1.08994 * 109.47734 * 300.00127 * 23 22 20 45 45 H 1.08996 * 109.36324 * 49.95712 * 24 22 20 46 46 H 1.09000 * 109.36029 * 169.54270 * 24 22 20 47 47 H 1.08006 * 117.87835 * 162.91962 * 25 24 22 48 48 H 1.07998 * 117.96805 * 180.43356 * 26 25 24 49 49 H 1.08998 * 109.35537 * 222.65906 * 27 26 25 50 50 H 1.09006 * 109.35531 * 103.08022 * 27 26 25 51 51 H 1.09008 * 109.64018 * 289.75038 * 28 27 26 52 52 H 1.09002 * 109.81544 * 169.22768 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 7 3.5041 -0.8266 -1.1904 6 6 4.1311 0.4994 -1.2719 7 6 4.0109 -1.7143 -2.2455 8 6 5.4725 -1.9937 -2.0077 9 8 6.0368 -1.5014 -1.0536 10 7 6.1530 -2.7898 -2.8560 11 6 7.4830 -3.0436 -2.6401 12 1 7.9852 -2.6059 -1.7900 13 6 8.1844 -3.8647 -3.5143 14 7 9.4590 -4.1084 -3.3070 15 14 7.3157 -4.6224 -4.9842 16 1 7.4248 -3.7078 -6.1490 17 1 7.9483 -5.9243 -5.3161 18 1 5.8835 -4.8373 -4.6560 19 7 2.0183 -0.6906 1.1962 20 6 2.1470 -0.0183 2.3571 21 8 1.8582 1.1584 2.4117 22 6 2.6498 -0.7286 3.5875 23 6 1.6400 -1.7960 4.0137 24 6 2.8412 0.2805 4.7218 25 6 4.0157 1.1729 4.4207 26 6 4.9259 0.9042 3.5403 27 6 4.9333 -0.3317 2.6891 28 6 4.0013 -1.3884 3.2858 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3632 0.5138 -0.8900 32 1 1.7517 -0.1583 -2.1369 33 1 1.6055 -1.7198 -1.2951 34 1 3.7911 1.1139 -0.4383 35 1 3.8525 0.9759 -2.2118 36 1 5.2149 0.3923 -1.2265 37 1 3.4546 -2.6516 -2.2299 38 1 3.8859 -1.2337 -3.2157 39 1 5.7020 -3.1832 -3.6193 40 1 9.9488 -4.6813 -3.9175 41 1 2.2491 -1.6317 1.1526 42 1 1.5114 -2.5174 3.2067 43 1 2.0065 -2.3083 4.9033 44 1 0.6830 -1.3234 4.2345 45 1 1.9395 0.8842 4.8244 46 1 3.0236 -0.2541 5.6540 47 1 4.1031 2.0964 4.9739 48 1 5.7300 1.6134 3.4106 49 1 5.9467 -0.7301 2.6396 50 1 4.5969 -0.0797 1.6833 51 1 4.4325 -1.7786 4.2078 52 1 3.8612 -2.2019 2.5739 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001498295488.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:59 Heat of formation + Delta-G solvation = -79.701870 kcal Electronic energy + Delta-G solvation = -31329.383425 eV Core-core repulsion = 27327.995174 eV Total energy + Delta-G solvation = -4001.388250 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -41.69479 -40.45303 -38.92332 -37.85194 -36.08317 -35.49904 -34.01369 -33.69686 -32.08204 -31.19454 -29.59565 -27.99565 -27.49138 -26.53552 -24.75561 -24.01792 -23.50923 -21.51531 -21.17601 -20.81352 -20.11762 -19.15188 -17.76857 -17.41016 -17.16519 -16.80203 -16.65481 -16.46978 -15.99720 -15.84869 -15.54444 -15.17643 -15.01222 -14.86748 -14.75224 -14.43471 -14.30530 -14.09935 -13.71481 -13.56661 -13.51836 -13.29921 -13.13909 -13.03660 -12.91087 -12.87306 -12.81737 -12.69552 -12.64081 -12.45265 -12.36321 -12.31930 -11.96072 -11.68832 -11.41938 -11.31339 -11.07070 -10.50971 -10.29009 -10.17675 -9.95645 -9.75707 -9.18708 -8.37450 -5.97283 1.31557 1.37405 1.44118 1.46010 1.84817 2.03836 2.25608 2.37203 2.65741 3.19564 3.29101 3.61349 3.73288 3.76708 3.83460 4.11836 4.16196 4.23140 4.27182 4.35593 4.41744 4.43294 4.44964 4.47867 4.55942 4.58872 4.60230 4.71890 4.74359 4.81367 4.84259 4.85325 4.90989 4.95684 5.06346 5.08755 5.14148 5.19739 5.27694 5.29389 5.31782 5.35958 5.57251 5.70230 5.74463 5.93103 6.03658 6.08582 6.19147 6.64902 6.75616 6.94694 7.45839 7.46488 8.05142 8.80420 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014257 B = 0.003185 C = 0.002848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1963.507303 B = 8787.729850 C = 9828.618691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.146 3.854 3 H 0.057 0.943 4 C 0.048 3.952 5 N -0.526 5.526 6 C 0.033 3.967 7 C 0.054 3.946 8 C 0.452 3.548 9 O -0.599 6.599 10 N -0.595 5.595 11 C -0.321 4.321 12 H 0.054 0.946 13 C -0.017 4.017 14 N -0.938 5.938 15 Si 0.963 3.037 16 H -0.261 1.261 17 H -0.278 1.278 18 H -0.227 1.227 19 N -0.699 5.699 20 C 0.529 3.471 21 O -0.584 6.584 22 C -0.078 4.078 23 C -0.134 4.134 24 C -0.065 4.065 25 C -0.144 4.144 26 C -0.175 4.175 27 C -0.091 4.091 28 C -0.096 4.096 29 H 0.076 0.924 30 H 0.043 0.957 31 H 0.078 0.922 32 H 0.064 0.936 33 H 0.107 0.893 34 H 0.055 0.945 35 H 0.031 0.969 36 H 0.052 0.948 37 H 0.126 0.874 38 H 0.075 0.925 39 H 0.388 0.612 40 H 0.277 0.723 41 H 0.408 0.592 42 H 0.071 0.929 43 H 0.085 0.915 44 H 0.062 0.938 45 H 0.074 0.926 46 H 0.101 0.899 47 H 0.106 0.894 48 H 0.090 0.910 49 H 0.054 0.946 50 H 0.059 0.941 51 H 0.085 0.915 52 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.081 2.573 7.524 24.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.041 3.959 3 H 0.075 0.925 4 C -0.080 4.080 5 N -0.250 5.250 6 C -0.115 4.115 7 C -0.077 4.077 8 C 0.240 3.760 9 O -0.482 6.482 10 N -0.238 5.238 11 C -0.451 4.451 12 H 0.072 0.928 13 C -0.215 4.215 14 N -0.580 5.580 15 Si 0.784 3.216 16 H -0.186 1.186 17 H -0.203 1.203 18 H -0.151 1.151 19 N -0.350 5.350 20 C 0.316 3.684 21 O -0.464 6.464 22 C -0.081 4.081 23 C -0.191 4.191 24 C -0.102 4.102 25 C -0.162 4.162 26 C -0.193 4.193 27 C -0.129 4.129 28 C -0.134 4.134 29 H 0.095 0.905 30 H 0.062 0.938 31 H 0.097 0.903 32 H 0.082 0.918 33 H 0.125 0.875 34 H 0.074 0.926 35 H 0.050 0.950 36 H 0.071 0.929 37 H 0.144 0.856 38 H 0.093 0.907 39 H 0.223 0.777 40 H 0.087 0.913 41 H 0.244 0.756 42 H 0.090 0.910 43 H 0.103 0.897 44 H 0.081 0.919 45 H 0.093 0.907 46 H 0.119 0.881 47 H 0.124 0.876 48 H 0.109 0.891 49 H 0.073 0.927 50 H 0.078 0.922 51 H 0.103 0.897 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -22.603 3.442 8.581 24.420 hybrid contribution 0.847 -0.041 -1.678 1.880 sum -21.756 3.401 6.902 23.077 Atomic orbital electron populations 1.22045 0.93337 1.03219 1.02306 1.20928 0.94532 0.96194 0.84237 0.92510 1.22582 0.86202 1.02706 0.96470 1.61462 1.05542 1.11220 1.46759 1.22305 1.00314 0.89586 0.99305 1.21858 0.91392 0.99965 0.94487 1.20915 0.90048 0.81406 0.83634 1.90539 1.71522 1.53844 1.32275 1.42043 1.09249 1.45931 1.26529 1.18965 0.85467 1.28961 1.11678 0.92766 1.26087 0.96194 0.97401 1.01844 1.69811 1.09942 1.38572 1.39640 0.85385 0.80141 0.78352 0.77752 1.18584 1.20340 1.15057 1.45788 1.66151 1.14412 1.08618 1.20670 0.75889 0.86569 0.85280 1.90631 1.52376 1.17549 1.85827 1.20922 0.96937 0.97101 0.93112 1.21823 0.97389 0.96756 1.03174 1.20465 0.96685 0.95700 0.97391 1.22170 0.95576 0.99812 0.98641 1.22029 0.99910 0.98807 0.98564 1.20363 0.99922 0.94231 0.98345 1.21605 0.92854 0.96905 1.02012 0.90517 0.93783 0.90340 0.91753 0.87497 0.92619 0.95049 0.92916 0.85585 0.90685 0.77663 0.91346 0.75591 0.90997 0.89655 0.91895 0.90718 0.88062 0.87557 0.89147 0.92727 0.92247 0.89678 0.90678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 9.48 71.99 0.68 -1.65 16 2 C 0.15 2.97 2.35 45.00 0.11 3.07 16 3 H 0.06 1.51 6.23 -2.39 -0.01 1.49 16 4 C 0.05 0.85 4.52 86.30 0.39 1.24 16 5 N -0.53 -13.97 4.22 -927.05 -3.92 -17.88 16 6 C 0.03 1.03 8.96 127.69 1.14 2.18 16 7 C 0.05 1.47 5.45 85.55 0.47 1.94 16 8 C 0.45 19.16 7.47 87.65 0.66 19.81 16 9 O -0.60 -31.28 13.91 -3.06 -0.04 -31.32 16 10 N -0.60 -26.83 5.09 -306.99 -1.56 -28.39 16 11 C -0.32 -18.39 10.16 84.04 0.85 -17.54 16 12 H 0.05 3.73 7.39 -2.91 -0.02 3.70 16 13 C -0.02 -0.94 5.50 84.93 0.47 -0.48 16 14 N -0.94 -56.31 13.96 21.66 0.30 -56.01 16 15 Si 0.96 38.01 27.74 68.60 1.90 39.91 16 16 H -0.26 -9.86 7.11 99.48 0.71 -9.16 16 17 H -0.28 -11.01 7.11 99.48 0.71 -10.30 16 18 H -0.23 -7.36 6.52 99.48 0.65 -6.71 16 19 N -0.70 -15.16 4.56 -442.53 -2.02 -17.18 16 20 C 0.53 13.56 4.69 87.66 0.41 13.97 16 21 O -0.58 -19.25 14.98 -3.04 -0.05 -19.30 16 22 C -0.08 -1.61 0.65 -52.79 -0.03 -1.64 16 23 C -0.13 -1.88 8.44 71.98 0.61 -1.27 16 24 C -0.07 -1.38 4.58 29.81 0.14 -1.24 16 25 C -0.14 -3.68 9.08 27.19 0.25 -3.44 16 26 C -0.17 -5.13 9.62 27.04 0.26 -4.87 16 27 C -0.09 -2.82 5.59 29.66 0.17 -2.65 16 28 C -0.10 -2.23 4.71 30.73 0.14 -2.08 16 29 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.06 0.97 8.12 -2.39 -0.02 0.95 16 33 H 0.11 1.37 7.93 -2.39 -0.02 1.35 16 34 H 0.06 1.78 6.58 -2.39 -0.02 1.77 16 35 H 0.03 0.84 8.14 -2.39 -0.02 0.83 16 36 H 0.05 2.12 5.82 -2.39 -0.01 2.11 16 37 H 0.13 2.59 7.93 -2.38 -0.02 2.58 16 38 H 0.08 1.73 8.12 -2.39 -0.02 1.71 16 39 H 0.39 14.39 5.76 -92.71 -0.53 13.85 16 40 H 0.28 15.25 8.31 -92.71 -0.77 14.48 16 41 H 0.41 7.92 7.74 -92.71 -0.72 7.20 16 42 H 0.07 0.87 7.97 -2.38 -0.02 0.85 16 43 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.06 0.86 8.14 -2.39 -0.02 0.85 16 45 H 0.07 1.67 7.68 -2.39 -0.02 1.65 16 46 H 0.10 1.62 8.11 -2.39 -0.02 1.60 16 47 H 0.11 2.48 8.06 -2.91 -0.02 2.46 16 48 H 0.09 2.68 8.06 -2.91 -0.02 2.66 16 49 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 50 H 0.06 2.14 7.34 -2.38 -0.02 2.13 16 51 H 0.08 1.74 8.13 -2.38 -0.02 1.72 16 52 H 0.07 1.70 7.58 -2.39 -0.02 1.68 16 Total: -1.00 -78.88 406.31 0.93 -77.95 By element: Atomic # 1 Polarization: 47.27 SS G_CDS: -0.40 Total: 46.87 kcal Atomic # 6 Polarization: -1.35 SS G_CDS: 6.70 Total: 5.35 kcal Atomic # 7 Polarization: -112.27 SS G_CDS: -7.19 Total: -119.47 kcal Atomic # 8 Polarization: -50.53 SS G_CDS: -0.09 Total: -50.62 kcal Atomic # 14 Polarization: 38.01 SS G_CDS: 1.90 Total: 39.91 kcal Total: -78.88 0.93 -77.95 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498295488.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.749 kcal (2) G-P(sol) polarization free energy of solvation -78.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds