Wall clock time and date at job start Tue Mar 31 2020 20:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47225 * 2 1 4 4 C 1.53001 * 109.47527 * 120.00276 * 2 1 3 5 5 C 1.52998 * 109.47262 * 184.99796 * 4 2 1 6 6 N 1.46503 * 109.46826 * 179.97438 * 5 4 2 7 7 C 1.34777 * 119.99726 * 179.97438 * 6 5 4 8 8 O 1.21285 * 120.00189 * 0.02562 * 7 6 5 9 9 C 1.50703 * 120.00211 * 180.02562 * 7 6 5 10 10 C 1.52301 * 115.91418 * 111.83145 * 9 7 6 11 11 C 1.51880 * 115.30014 * 180.02562 * 9 7 6 12 12 H 1.09007 * 117.20449 * 359.24258 * 11 9 7 13 13 C 1.52709 * 120.64634 * 149.11371 * 11 9 7 14 14 C 1.52880 * 110.04095 * 338.33040 * 13 11 9 15 15 C 1.53300 * 108.57964 * 54.58743 * 14 13 11 16 16 C 1.52070 * 114.63476 * 325.58979 * 9 7 6 17 17 N 1.46903 * 109.47043 * 240.00261 * 2 1 3 18 18 C 1.46904 * 110.99792 * 84.99665 * 17 2 1 19 19 C 1.50700 * 109.47115 * 179.97438 * 18 17 2 20 20 O 1.21301 * 119.99678 * 0.02562 * 19 18 17 21 21 N 1.34774 * 120.00337 * 180.02562 * 19 18 17 22 22 C 1.37095 * 120.00289 * 180.02562 * 21 19 18 23 23 H 1.07998 * 119.99611 * 0.02562 * 22 21 19 24 24 C 1.38945 * 119.99995 * 180.02562 * 22 21 19 25 25 N 1.31416 * 120.00101 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 120.00033 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47116 * 89.99555 * 26 24 22 28 28 H 1.48503 * 109.47215 * 210.00092 * 26 24 22 29 29 H 1.48500 * 109.46788 * 329.99846 * 26 24 22 30 30 H 1.09001 * 109.46799 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46824 * 299.99475 * 1 2 3 32 32 H 1.08993 * 109.47596 * 59.99844 * 1 2 3 33 33 H 1.09004 * 109.46836 * 64.99669 * 4 2 1 34 34 H 1.09002 * 109.46926 * 305.00283 * 4 2 1 35 35 H 1.08997 * 109.46982 * 60.00178 * 5 4 2 36 36 H 1.08993 * 109.47662 * 299.99945 * 5 4 2 37 37 H 0.96993 * 120.00149 * 0.02562 * 6 5 4 38 38 H 1.08997 * 117.53694 * 213.16826 * 10 9 7 39 39 H 1.09008 * 117.53650 * 358.41700 * 10 9 7 40 40 H 1.09002 * 109.35928 * 218.18737 * 13 11 9 41 41 H 1.08994 * 109.35374 * 98.46953 * 13 11 9 42 42 H 1.08991 * 109.61947 * 174.31808 * 14 13 11 43 43 H 1.09007 * 109.61510 * 294.85916 * 14 13 11 44 44 H 1.08993 * 109.61844 * 45.29131 * 15 14 13 45 45 H 1.09004 * 109.61052 * 165.83093 * 15 14 13 46 46 H 1.09008 * 109.27075 * 74.10113 * 16 9 7 47 47 H 1.09000 * 109.24221 * 314.61746 * 16 9 7 48 48 H 1.00897 * 110.99681 * 321.04722 * 17 2 1 49 49 H 1.08992 * 109.47094 * 300.00089 * 18 17 2 50 50 H 1.09007 * 109.47003 * 60.00317 * 18 17 2 51 51 H 0.97002 * 119.99489 * 0.02562 * 21 19 18 52 52 H 0.96998 * 119.99653 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5649 -0.6133 1.3135 6 7 4.0532 -1.3035 2.5100 7 6 5.3741 -1.3397 2.7752 8 8 6.1585 -0.8005 2.0235 9 6 5.8766 -2.0501 4.0056 10 6 6.6809 -3.3197 3.7593 11 6 7.3826 -2.0243 4.2005 12 1 7.9747 -1.5135 3.4410 13 6 7.9863 -2.0360 5.6031 14 6 6.9575 -1.5422 6.6204 15 6 5.6874 -2.3892 6.4811 16 6 4.9529 -1.9613 5.2104 17 7 2.0196 -0.6925 -1.1995 18 6 2.0823 0.2227 -2.3469 19 6 2.5883 -0.5213 -3.5558 20 8 2.8687 -1.6983 -3.4700 21 7 2.7294 0.1211 -4.7322 22 6 3.1893 -0.5559 -5.8321 23 1 3.4381 -1.6041 -5.7559 24 6 3.3352 0.1065 -7.0447 25 7 3.0319 1.3818 -7.1375 26 14 3.9611 -0.8161 -8.5436 27 1 2.8117 -1.3972 -9.2828 28 1 4.6971 0.1209 -9.4300 29 1 4.8721 -1.9055 -8.1094 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.7517 -1.7716 1.2055 34 1 1.6054 -0.2618 2.1369 35 1 3.8532 0.4369 1.3573 36 1 3.9995 -1.0728 0.4259 37 1 3.4259 -1.7350 3.1109 38 1 6.5944 -4.1213 4.4928 39 1 6.8144 -3.6391 2.7257 40 1 8.8592 -1.3836 5.6262 41 1 8.2878 -3.0519 5.8581 42 1 7.3593 -1.6481 7.6280 43 1 6.7229 -0.4958 6.4252 44 1 5.9562 -3.4431 6.4109 45 1 5.0444 -2.2296 7.3467 46 1 4.0940 -2.6141 5.0541 47 1 4.6076 -0.9336 5.3234 48 1 1.4495 -1.4978 -1.4101 49 1 1.0870 0.6164 -2.5525 50 1 2.7588 1.0464 -2.1182 51 1 2.5055 1.0624 -4.8006 52 1 3.1341 1.8443 -7.9840 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001503468655.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:05:54 Heat of formation + Delta-G solvation = -74.368243 kcal Electronic energy + Delta-G solvation = -28896.219136 eV Core-core repulsion = 24895.062169 eV Total energy + Delta-G solvation = -4001.156967 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.90250 -38.65313 -38.26166 -37.02191 -34.86546 -33.86422 -33.37976 -31.81071 -31.22572 -30.89571 -28.84109 -26.30812 -25.36038 -24.48811 -23.85441 -22.55348 -21.74362 -21.00351 -20.42265 -19.23942 -18.65132 -17.86871 -17.65666 -16.10474 -15.92085 -15.76097 -15.24699 -15.20550 -14.73532 -14.62617 -14.51323 -14.31513 -14.18044 -13.91816 -13.71443 -13.64395 -13.28186 -13.03376 -12.88596 -12.63922 -12.40111 -12.24746 -12.15157 -11.89299 -11.54960 -11.50722 -11.38196 -11.30790 -11.25306 -11.18968 -11.00902 -10.86441 -10.84336 -10.36670 -10.25582 -10.18578 -10.03284 -9.70837 -9.47680 -9.04078 -8.43075 -8.01067 -7.92116 -6.38514 -3.79110 2.46933 3.06609 3.20266 3.28678 3.35235 3.51751 3.94678 4.11829 4.20519 4.30480 4.35156 4.41115 4.50981 4.69575 4.73075 4.85472 4.86688 5.00685 5.10816 5.13284 5.15546 5.21214 5.25095 5.29566 5.32871 5.41509 5.44202 5.49519 5.51475 5.56796 5.69637 5.70929 5.74308 5.76305 5.78833 5.85052 5.86888 5.93174 6.01641 6.08199 6.10448 6.12083 6.29063 6.32301 6.45478 7.25011 7.45992 7.58433 7.69242 8.09826 8.21399 8.64830 9.21325 9.57967 10.09573 10.79291 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.015139 B = 0.001953 C = 0.001788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.092103 B =14334.443100 C =15656.648410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.085 3.915 3 H 0.079 0.921 4 C -0.114 4.114 5 C 0.122 3.878 6 N -0.726 5.726 7 C 0.541 3.459 8 O -0.535 6.535 9 C -0.145 4.145 10 C -0.156 4.156 11 C -0.117 4.117 12 H 0.117 0.883 13 C -0.089 4.089 14 C -0.122 4.122 15 C -0.120 4.120 16 C -0.081 4.081 17 N -0.663 5.663 18 C 0.051 3.949 19 C 0.441 3.559 20 O -0.583 6.583 21 N -0.564 5.564 22 C -0.298 4.298 23 H 0.103 0.897 24 C 0.021 3.979 25 N -0.902 5.902 26 Si 0.930 3.070 27 H -0.279 1.279 28 H -0.284 1.284 29 H -0.269 1.269 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.061 0.939 36 H 0.089 0.911 37 H 0.396 0.604 38 H 0.103 0.897 39 H 0.099 0.901 40 H 0.069 0.931 41 H 0.068 0.932 42 H 0.064 0.936 43 H 0.066 0.934 44 H 0.066 0.934 45 H 0.067 0.933 46 H 0.070 0.930 47 H 0.071 0.929 48 H 0.350 0.650 49 H 0.043 0.957 50 H 0.085 0.915 51 H 0.392 0.608 52 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.223 -3.605 29.094 29.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.027 4.027 3 H 0.098 0.902 4 C -0.153 4.153 5 C -0.001 4.001 6 N -0.377 5.377 7 C 0.327 3.673 8 O -0.412 6.412 9 C -0.148 4.148 10 C -0.193 4.193 11 C -0.135 4.135 12 H 0.135 0.865 13 C -0.126 4.126 14 C -0.159 4.159 15 C -0.157 4.157 16 C -0.119 4.119 17 N -0.295 5.295 18 C -0.082 4.082 19 C 0.227 3.773 20 O -0.467 6.467 21 N -0.201 5.201 22 C -0.428 4.428 23 H 0.121 0.879 24 C -0.180 4.180 25 N -0.544 5.544 26 Si 0.757 3.243 27 H -0.205 1.205 28 H -0.209 1.209 29 H -0.194 1.194 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.079 0.921 36 H 0.107 0.893 37 H 0.230 0.770 38 H 0.122 0.878 39 H 0.118 0.882 40 H 0.088 0.912 41 H 0.087 0.913 42 H 0.083 0.917 43 H 0.084 0.916 44 H 0.084 0.916 45 H 0.086 0.914 46 H 0.089 0.911 47 H 0.089 0.911 48 H 0.170 0.830 49 H 0.061 0.939 50 H 0.104 0.896 51 H 0.225 0.775 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.212 -3.789 28.554 28.829 hybrid contribution -1.257 0.190 -0.945 1.584 sum -0.045 -3.599 27.609 27.843 Atomic orbital electron populations 1.22511 0.97177 1.02265 1.02199 1.21504 0.92404 0.98165 0.90582 0.90231 1.21742 0.94582 1.01666 0.97307 1.21398 0.93836 0.97170 0.87722 1.45996 1.07227 1.57128 1.27364 1.19641 0.82307 0.79703 0.85665 1.90731 1.55439 1.45546 1.49438 1.21064 0.94807 1.03303 0.95625 1.23245 1.02356 0.90497 1.03192 1.22292 0.91858 1.00434 0.98954 0.86496 1.21092 0.97952 1.01669 0.91933 1.21591 0.95552 1.00051 0.98708 1.21594 0.96973 1.00115 0.97029 1.20826 0.96869 1.02137 0.92059 1.60202 1.57566 1.09108 1.02598 1.21699 0.99846 0.95754 0.90912 1.19830 0.85095 0.88243 0.84180 1.90525 1.55283 1.16310 1.84612 1.41863 1.57836 1.12438 1.07973 1.19699 1.39897 0.96412 0.86764 0.87950 1.25262 0.97717 0.95783 0.99260 1.69615 1.48811 1.08819 1.27129 0.85857 0.78852 0.78985 0.80593 1.20468 1.20928 1.19401 0.92315 0.92244 0.92335 0.91160 0.91564 0.92059 0.89309 0.76980 0.87838 0.88245 0.91233 0.91327 0.91724 0.91564 0.91557 0.91399 0.91146 0.91057 0.83048 0.93871 0.89630 0.77483 0.91916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.79 9.16 37.16 0.34 -1.45 16 2 C 0.08 0.97 2.59 -67.71 -0.18 0.79 16 3 H 0.08 0.91 7.80 -51.93 -0.40 0.51 16 4 C -0.11 -1.12 5.00 -26.73 -0.13 -1.26 16 5 C 0.12 1.52 5.56 -4.04 -0.02 1.50 16 6 N -0.73 -7.83 5.45 -60.30 -0.33 -8.16 16 7 C 0.54 7.04 7.26 -10.98 -0.08 6.96 16 8 O -0.54 -9.47 15.99 5.55 0.09 -9.38 16 9 C -0.14 -1.37 2.48 -157.06 -0.39 -1.76 16 10 C -0.16 -1.38 9.29 -26.68 -0.25 -1.63 16 11 C -0.12 -1.11 5.63 -90.93 -0.51 -1.62 16 12 H 0.12 1.38 7.43 -51.92 -0.39 0.99 16 13 C -0.09 -0.62 5.84 -26.94 -0.16 -0.77 16 14 C -0.12 -0.74 5.92 -26.64 -0.16 -0.89 16 15 C -0.12 -0.66 5.70 -26.64 -0.15 -0.81 16 16 C -0.08 -0.54 4.75 -27.27 -0.13 -0.67 16 17 N -0.66 -10.39 5.33 -107.99 -0.58 -10.97 16 18 C 0.05 0.90 5.97 -4.97 -0.03 0.87 16 19 C 0.44 10.60 7.82 -10.99 -0.09 10.52 16 20 O -0.58 -16.12 15.78 5.54 0.09 -16.04 16 21 N -0.56 -14.61 5.29 -10.96 -0.06 -14.67 16 22 C -0.30 -8.49 9.68 -14.94 -0.14 -8.64 16 23 H 0.10 3.06 7.16 -52.49 -0.38 2.69 16 24 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 25 N -0.90 -24.97 13.05 55.50 0.72 -24.24 16 26 Si 0.93 21.49 29.55 -169.99 -5.02 16.47 16 27 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 28 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 29 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 30 H 0.06 0.56 8.13 -51.93 -0.42 0.14 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.62 7.45 -51.93 -0.39 0.23 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.09 1.46 7.75 -51.93 -0.40 1.05 16 37 H 0.40 3.04 7.48 -40.82 -0.31 2.73 16 38 H 0.10 0.71 7.26 -51.93 -0.38 0.33 16 39 H 0.10 1.02 8.14 -51.92 -0.42 0.60 16 40 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.07 0.41 8.05 -51.93 -0.42 0.00 16 42 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.07 0.45 8.04 -51.93 -0.42 0.04 16 44 H 0.07 0.35 7.11 -51.93 -0.37 -0.02 16 45 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 46 H 0.07 0.37 7.81 -51.92 -0.41 -0.04 16 47 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.35 5.70 8.17 -39.29 -0.32 5.38 16 49 H 0.04 0.69 7.43 -51.93 -0.39 0.30 16 50 H 0.09 1.43 8.06 -51.93 -0.42 1.02 16 51 H 0.39 9.69 7.90 -40.82 -0.32 9.37 16 52 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 414.55 15.07 6.25 6.25 Total: -1.00 -34.11 414.55 -10.07 -44.18 By element: Atomic # 1 Polarization: 24.00 SS G_CDS: -9.06 Total: 14.94 kcal Atomic # 6 Polarization: 3.80 SS G_CDS: -2.17 Total: 1.62 kcal Atomic # 7 Polarization: -57.80 SS G_CDS: -0.24 Total: -58.04 kcal Atomic # 8 Polarization: -25.60 SS G_CDS: 0.18 Total: -25.42 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -34.11 -10.07 -44.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001503468655.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.188 kcal (2) G-P(sol) polarization free energy of solvation -34.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds