Wall clock time and date at job start Tue Mar 31 2020 20:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47225 * 2 1 4 4 C 1.53001 * 109.47527 * 120.00276 * 2 1 3 5 5 C 1.52998 * 109.47262 * 184.99796 * 4 2 1 6 6 N 1.46503 * 109.46826 * 179.97438 * 5 4 2 7 7 C 1.34777 * 119.99726 * 179.97438 * 6 5 4 8 8 O 1.21285 * 120.00189 * 0.02562 * 7 6 5 9 9 C 1.50703 * 120.00211 * 180.02562 * 7 6 5 10 10 C 1.52301 * 115.91418 * 111.83145 * 9 7 6 11 11 C 1.51880 * 115.30014 * 180.02562 * 9 7 6 12 12 H 1.09007 * 117.20449 * 359.24258 * 11 9 7 13 13 C 1.52709 * 120.64634 * 149.11371 * 11 9 7 14 14 C 1.52880 * 110.04095 * 338.33040 * 13 11 9 15 15 C 1.53300 * 108.57964 * 54.58743 * 14 13 11 16 16 C 1.52070 * 114.63476 * 325.58979 * 9 7 6 17 17 N 1.46903 * 109.47043 * 240.00261 * 2 1 3 18 18 C 1.46904 * 110.99792 * 84.99665 * 17 2 1 19 19 C 1.50700 * 109.47115 * 179.97438 * 18 17 2 20 20 O 1.21301 * 119.99678 * 0.02562 * 19 18 17 21 21 N 1.34774 * 120.00337 * 180.02562 * 19 18 17 22 22 C 1.37095 * 120.00289 * 180.02562 * 21 19 18 23 23 H 1.07998 * 119.99611 * 0.02562 * 22 21 19 24 24 C 1.38945 * 119.99995 * 180.02562 * 22 21 19 25 25 N 1.31416 * 120.00101 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 120.00033 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47116 * 89.99555 * 26 24 22 28 28 H 1.48503 * 109.47215 * 210.00092 * 26 24 22 29 29 H 1.48500 * 109.46788 * 329.99846 * 26 24 22 30 30 H 1.09001 * 109.46799 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46824 * 299.99475 * 1 2 3 32 32 H 1.08993 * 109.47596 * 59.99844 * 1 2 3 33 33 H 1.09004 * 109.46836 * 64.99669 * 4 2 1 34 34 H 1.09002 * 109.46926 * 305.00283 * 4 2 1 35 35 H 1.08997 * 109.46982 * 60.00178 * 5 4 2 36 36 H 1.08993 * 109.47662 * 299.99945 * 5 4 2 37 37 H 0.96993 * 120.00149 * 0.02562 * 6 5 4 38 38 H 1.08997 * 117.53694 * 213.16826 * 10 9 7 39 39 H 1.09008 * 117.53650 * 358.41700 * 10 9 7 40 40 H 1.09002 * 109.35928 * 218.18737 * 13 11 9 41 41 H 1.08994 * 109.35374 * 98.46953 * 13 11 9 42 42 H 1.08991 * 109.61947 * 174.31808 * 14 13 11 43 43 H 1.09007 * 109.61510 * 294.85916 * 14 13 11 44 44 H 1.08993 * 109.61844 * 45.29131 * 15 14 13 45 45 H 1.09004 * 109.61052 * 165.83093 * 15 14 13 46 46 H 1.09008 * 109.27075 * 74.10113 * 16 9 7 47 47 H 1.09000 * 109.24221 * 314.61746 * 16 9 7 48 48 H 1.00897 * 110.99681 * 321.04722 * 17 2 1 49 49 H 1.08992 * 109.47094 * 300.00089 * 18 17 2 50 50 H 1.09007 * 109.47003 * 60.00317 * 18 17 2 51 51 H 0.97002 * 119.99489 * 0.02562 * 21 19 18 52 52 H 0.96998 * 119.99653 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5649 -0.6133 1.3135 6 7 4.0532 -1.3035 2.5100 7 6 5.3741 -1.3397 2.7752 8 8 6.1585 -0.8005 2.0235 9 6 5.8766 -2.0501 4.0056 10 6 6.6809 -3.3197 3.7593 11 6 7.3826 -2.0243 4.2005 12 1 7.9747 -1.5135 3.4410 13 6 7.9863 -2.0360 5.6031 14 6 6.9575 -1.5422 6.6204 15 6 5.6874 -2.3892 6.4811 16 6 4.9529 -1.9613 5.2104 17 7 2.0196 -0.6925 -1.1995 18 6 2.0823 0.2227 -2.3469 19 6 2.5883 -0.5213 -3.5558 20 8 2.8687 -1.6983 -3.4700 21 7 2.7294 0.1211 -4.7322 22 6 3.1893 -0.5559 -5.8321 23 1 3.4381 -1.6041 -5.7559 24 6 3.3352 0.1065 -7.0447 25 7 3.0319 1.3818 -7.1375 26 14 3.9611 -0.8161 -8.5436 27 1 2.8117 -1.3972 -9.2828 28 1 4.6971 0.1209 -9.4300 29 1 4.8721 -1.9055 -8.1094 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.7517 -1.7716 1.2055 34 1 1.6054 -0.2618 2.1369 35 1 3.8532 0.4369 1.3573 36 1 3.9995 -1.0728 0.4259 37 1 3.4259 -1.7350 3.1109 38 1 6.5944 -4.1213 4.4928 39 1 6.8144 -3.6391 2.7257 40 1 8.8592 -1.3836 5.6262 41 1 8.2878 -3.0519 5.8581 42 1 7.3593 -1.6481 7.6280 43 1 6.7229 -0.4958 6.4252 44 1 5.9562 -3.4431 6.4109 45 1 5.0444 -2.2296 7.3467 46 1 4.0940 -2.6141 5.0541 47 1 4.6076 -0.9336 5.3234 48 1 1.4495 -1.4978 -1.4101 49 1 1.0870 0.6164 -2.5525 50 1 2.7588 1.0464 -2.1182 51 1 2.5055 1.0624 -4.8006 52 1 3.1341 1.8443 -7.9840 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001503468655.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:05:53 Heat of formation + Delta-G solvation = -99.000273 kcal Electronic energy + Delta-G solvation = -28897.287261 eV Core-core repulsion = 24895.062169 eV Total energy + Delta-G solvation = -4002.225092 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.74370 -40.25294 -39.34790 -38.25616 -36.12871 -35.78881 -33.98595 -33.34956 -32.74723 -31.73804 -29.75750 -27.97417 -26.13458 -25.71314 -25.04842 -23.44044 -22.41456 -21.95444 -21.35094 -21.05260 -19.94441 -19.38843 -18.47448 -17.74624 -17.01713 -16.93658 -16.69885 -16.37735 -16.13274 -15.80795 -15.60462 -15.33071 -15.23170 -14.86790 -14.83382 -14.52880 -14.32433 -14.11677 -14.06202 -13.63620 -13.54030 -13.48486 -13.11956 -12.95185 -12.91684 -12.83217 -12.67700 -12.44867 -12.26771 -12.20177 -12.12011 -11.92207 -11.76621 -11.72310 -11.52725 -11.47476 -10.95341 -10.68882 -10.65049 -10.36682 -10.10317 -10.03665 -9.25626 -8.48817 -5.97706 1.35789 1.39195 1.46808 1.52456 2.03218 2.14537 2.27365 2.75085 2.93551 3.18228 3.51873 3.53735 3.66106 3.73748 3.86031 3.86331 4.10424 4.12704 4.20987 4.27746 4.32938 4.36187 4.43945 4.47614 4.51348 4.55960 4.59625 4.60244 4.71832 4.74191 4.78959 4.89703 4.98312 5.00403 5.03057 5.12030 5.17993 5.22236 5.24760 5.27666 5.31204 5.33556 5.38557 5.39695 5.47580 5.52972 5.90293 6.13152 6.46005 6.54846 6.58014 7.10355 7.24622 7.53966 8.09540 8.68623 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.015139 B = 0.001953 C = 0.001788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.092103 B =14334.443100 C =15656.648410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.083 3.917 3 H 0.082 0.918 4 C -0.101 4.101 5 C 0.127 3.873 6 N -0.709 5.709 7 C 0.530 3.470 8 O -0.594 6.594 9 C -0.141 4.141 10 C -0.148 4.148 11 C -0.127 4.127 12 H 0.082 0.918 13 C -0.085 4.085 14 C -0.121 4.121 15 C -0.116 4.116 16 C -0.079 4.079 17 N -0.679 5.679 18 C 0.067 3.933 19 C 0.436 3.564 20 O -0.624 6.624 21 N -0.574 5.574 22 C -0.335 4.335 23 H 0.077 0.923 24 C -0.014 4.014 25 N -0.920 5.920 26 Si 0.994 3.006 27 H -0.268 1.268 28 H -0.270 1.270 29 H -0.275 1.275 30 H 0.061 0.939 31 H 0.084 0.916 32 H 0.049 0.951 33 H 0.075 0.925 34 H 0.103 0.897 35 H 0.050 0.950 36 H 0.043 0.957 37 H 0.415 0.585 38 H 0.134 0.866 39 H 0.077 0.923 40 H 0.066 0.934 41 H 0.083 0.917 42 H 0.081 0.919 43 H 0.054 0.946 44 H 0.074 0.926 45 H 0.086 0.914 46 H 0.091 0.909 47 H 0.070 0.930 48 H 0.345 0.655 49 H 0.069 0.931 50 H 0.097 0.903 51 H 0.396 0.604 52 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.854 -3.931 31.607 31.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.027 4.027 3 H 0.100 0.900 4 C -0.139 4.139 5 C 0.003 3.997 6 N -0.361 5.361 7 C 0.318 3.682 8 O -0.475 6.475 9 C -0.144 4.144 10 C -0.186 4.186 11 C -0.146 4.146 12 H 0.100 0.900 13 C -0.122 4.122 14 C -0.159 4.159 15 C -0.153 4.153 16 C -0.116 4.116 17 N -0.312 5.312 18 C -0.066 4.066 19 C 0.224 3.776 20 O -0.511 6.511 21 N -0.211 5.211 22 C -0.464 4.464 23 H 0.095 0.905 24 C -0.214 4.214 25 N -0.561 5.561 26 Si 0.817 3.183 27 H -0.193 1.193 28 H -0.195 1.195 29 H -0.200 1.200 30 H 0.080 0.920 31 H 0.103 0.897 32 H 0.068 0.932 33 H 0.094 0.906 34 H 0.121 0.879 35 H 0.068 0.932 36 H 0.062 0.938 37 H 0.253 0.747 38 H 0.152 0.848 39 H 0.095 0.905 40 H 0.085 0.915 41 H 0.102 0.898 42 H 0.099 0.901 43 H 0.072 0.928 44 H 0.093 0.907 45 H 0.104 0.896 46 H 0.109 0.891 47 H 0.089 0.911 48 H 0.164 0.836 49 H 0.087 0.913 50 H 0.115 0.885 51 H 0.230 0.770 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.474 -4.099 31.111 31.384 hybrid contribution -0.725 0.310 -1.718 1.890 sum -1.199 -3.789 29.393 29.660 Atomic orbital electron populations 1.22421 0.95171 1.02743 1.03032 1.21642 0.93942 0.97998 0.89130 0.90021 1.21688 0.92067 1.02282 0.97909 1.21208 0.95774 0.96057 0.86662 1.45861 1.07040 1.56290 1.26894 1.20411 0.82470 0.79081 0.86235 1.90700 1.56953 1.48184 1.51638 1.21132 0.95216 1.02921 0.95152 1.23294 1.01595 0.90906 1.02766 1.22294 0.91856 1.00645 0.99841 0.90019 1.21104 0.98074 1.02633 0.90399 1.21606 0.95746 0.99473 0.99059 1.21610 0.96627 1.00303 0.96785 1.20906 0.96854 1.02774 0.91094 1.60203 1.58713 1.09172 1.03063 1.21524 1.00919 0.95303 0.88815 1.20961 0.83400 0.88045 0.85213 1.90489 1.56675 1.18426 1.85471 1.41942 1.58344 1.12583 1.08256 1.19658 1.42263 0.95915 0.88590 0.90462 1.26064 0.97228 0.96669 1.01438 1.69675 1.48621 1.09631 1.28149 0.84920 0.78467 0.77783 0.77107 1.19330 1.19459 1.20009 0.92031 0.89703 0.93184 0.90599 0.87908 0.93204 0.93849 0.74711 0.84845 0.90480 0.91497 0.89817 0.90054 0.92755 0.90710 0.89579 0.89068 0.91122 0.83601 0.91349 0.88529 0.76997 0.91272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.92 9.16 71.98 0.66 -2.26 16 2 C 0.08 1.76 2.59 44.91 0.12 1.87 16 3 H 0.08 1.72 7.80 -2.39 -0.02 1.70 16 4 C -0.10 -1.78 5.00 30.59 0.15 -1.62 16 5 C 0.13 3.21 5.56 86.38 0.48 3.69 16 6 N -0.71 -15.05 5.45 -463.06 -2.52 -17.57 16 7 C 0.53 14.33 7.26 87.66 0.64 14.96 16 8 O -0.59 -22.78 15.99 -3.04 -0.05 -22.82 16 9 C -0.14 -2.61 2.48 -53.83 -0.13 -2.74 16 10 C -0.15 -2.58 9.29 30.63 0.28 -2.30 16 11 C -0.13 -2.50 5.63 -11.00 -0.06 -2.56 16 12 H 0.08 2.17 7.43 -2.38 -0.02 2.15 16 13 C -0.08 -1.09 5.84 30.46 0.18 -0.91 16 14 C -0.12 -1.20 5.92 30.65 0.18 -1.02 16 15 C -0.12 -0.88 5.70 30.65 0.17 -0.71 16 16 C -0.08 -0.84 4.75 30.25 0.14 -0.69 16 17 N -0.68 -21.24 5.33 -495.57 -2.64 -23.88 16 18 C 0.07 2.36 5.97 85.56 0.51 2.87 16 19 C 0.44 21.60 7.82 87.66 0.69 22.29 16 20 O -0.62 -35.94 15.78 -3.09 -0.05 -35.99 16 21 N -0.57 -30.60 5.29 -306.99 -1.62 -32.22 16 22 C -0.33 -19.69 9.68 84.04 0.81 -18.87 16 23 H 0.08 4.85 7.16 -2.91 -0.02 4.83 16 24 C -0.01 -0.79 5.50 84.92 0.47 -0.32 16 25 N -0.92 -50.91 13.05 21.66 0.28 -50.62 16 26 Si 0.99 44.27 29.55 68.60 2.03 46.30 16 27 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 28 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 29 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 30 H 0.06 1.01 8.13 -2.39 -0.02 0.99 16 31 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.05 0.93 7.45 -2.39 -0.02 0.92 16 33 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 34 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.04 1.51 7.75 -2.39 -0.02 1.49 16 37 H 0.42 5.49 7.48 -92.71 -0.69 4.79 16 38 H 0.13 1.50 7.26 -2.39 -0.02 1.48 16 39 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 40 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.08 0.83 8.05 -2.39 -0.02 0.81 16 42 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 43 H 0.05 0.67 8.04 -2.38 -0.02 0.65 16 44 H 0.07 0.48 7.11 -2.39 -0.02 0.47 16 45 H 0.09 0.41 8.14 -2.38 -0.02 0.39 16 46 H 0.09 0.61 7.81 -2.38 -0.02 0.59 16 47 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 48 H 0.34 11.26 8.17 -89.70 -0.73 10.53 16 49 H 0.07 2.09 7.43 -2.39 -0.02 2.07 16 50 H 0.10 3.22 8.06 -2.38 -0.02 3.20 16 51 H 0.40 20.02 7.90 -92.71 -0.73 19.29 16 52 H 0.28 14.36 8.31 -92.71 -0.77 13.59 16 Total: -1.00 -79.26 414.55 -0.51 -79.76 By element: Atomic # 1 Polarization: 46.60 SS G_CDS: -1.22 Total: 45.38 kcal Atomic # 6 Polarization: 6.38 SS G_CDS: 5.29 Total: 11.67 kcal Atomic # 7 Polarization: -117.80 SS G_CDS: -6.50 Total: -124.30 kcal Atomic # 8 Polarization: -58.72 SS G_CDS: -0.10 Total: -58.81 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -79.26 -0.51 -79.76 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001503468655.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.237 kcal (2) G-P(sol) polarization free energy of solvation -79.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds