Wall clock time and date at job start Tue Mar 31 2020 20:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47090 * 2 1 4 4 C 1.52992 * 109.47400 * 120.00430 * 2 1 3 5 5 C 1.50708 * 109.46923 * 294.99672 * 4 2 1 6 6 O 1.21284 * 119.99891 * 359.72875 * 5 4 2 7 7 N 1.34771 * 120.00105 * 179.97438 * 5 4 2 8 8 C 1.46502 * 120.00119 * 179.73051 * 7 5 4 9 9 H 1.08997 * 109.46790 * 324.99422 * 8 7 5 10 10 C 1.52997 * 109.47070 * 84.99937 * 8 7 5 11 11 C 1.53001 * 109.46928 * 205.00033 * 8 7 5 12 12 C 1.53941 * 113.73353 * 161.86982 * 11 8 7 13 13 N 1.48189 * 86.10045 * 221.95905 * 12 11 8 14 14 C 1.46899 * 111.06950 * 137.52557 * 13 12 11 15 15 C 1.50700 * 109.47343 * 90.56265 * 14 13 12 16 16 O 1.21285 * 120.00149 * 359.97438 * 15 14 13 17 17 N 1.34774 * 119.99658 * 179.97438 * 15 14 13 18 18 C 1.37099 * 119.99855 * 179.97438 * 17 15 14 19 19 H 1.07998 * 120.00214 * 359.97438 * 18 17 15 20 20 C 1.38956 * 120.00201 * 180.02562 * 18 17 15 21 21 N 1.31409 * 120.00060 * 179.97438 * 20 18 17 22 22 Si 1.86803 * 119.99662 * 359.97438 * 20 18 17 23 23 H 1.48503 * 109.47225 * 90.00467 * 22 20 18 24 24 H 1.48497 * 109.46941 * 210.00305 * 22 20 18 25 25 H 1.48503 * 109.47066 * 329.99989 * 22 20 18 26 26 C 1.47957 * 90.79959 * 24.59831 * 13 12 11 27 27 C 1.53009 * 109.47028 * 240.00245 * 2 1 3 28 28 C 1.52998 * 117.49462 * 128.62130 * 27 2 1 29 29 C 1.52997 * 117.49877 * 59.99957 * 27 2 1 30 30 H 1.08998 * 109.47090 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47240 * 299.99780 * 1 2 3 32 32 H 1.08997 * 109.47453 * 59.99934 * 1 2 3 33 33 H 1.09000 * 109.47573 * 175.00243 * 4 2 1 34 34 H 1.08995 * 109.47713 * 54.99716 * 4 2 1 35 35 H 0.97007 * 120.00005 * 359.72974 * 7 5 4 36 36 H 1.08998 * 109.47609 * 60.08772 * 10 8 7 37 37 H 1.09007 * 109.46597 * 180.02562 * 10 8 7 38 38 H 1.08996 * 109.47405 * 300.07676 * 10 8 7 39 39 H 1.08993 * 112.94024 * 293.43725 * 11 8 7 40 40 H 1.09004 * 113.75730 * 336.23885 * 12 11 8 41 41 H 1.08993 * 113.75540 * 107.60086 * 12 11 8 42 42 H 1.09006 * 109.46615 * 210.56175 * 14 13 12 43 43 H 1.08999 * 109.46830 * 330.56144 * 14 13 12 44 44 H 0.97006 * 120.00550 * 0.02562 * 17 15 14 45 45 H 0.97001 * 120.00061 * 179.97438 * 21 20 18 46 46 H 1.09004 * 113.75911 * 221.08118 * 26 13 12 47 47 H 1.09000 * 113.85809 * 89.74112 * 26 13 12 48 48 H 1.08999 * 115.54574 * 274.32933 * 27 2 1 49 49 H 1.08992 * 117.50568 * 359.97438 * 28 27 2 50 50 H 1.09005 * 117.49398 * 145.02557 * 28 27 2 51 51 H 1.09005 * 117.49926 * 214.98176 * 29 27 2 52 52 H 1.09006 * 117.49693 * 359.97438 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.6414 0.0570 2.4765 6 8 1.0156 1.0897 2.3630 7 7 1.9845 -0.3919 3.7001 8 6 1.6021 0.3677 4.8930 9 1 1.6381 1.4343 4.6714 10 6 0.1819 -0.0190 5.3103 11 6 2.5728 0.0506 6.0323 12 6 2.5528 1.0875 7.1700 13 7 4.0294 0.9617 7.1741 14 6 4.6710 2.2769 7.3030 15 6 4.8879 2.5893 8.7612 16 8 4.5415 1.7949 9.6097 17 7 5.4667 3.7516 9.1225 18 6 5.6635 4.0361 10.4491 19 1 5.3544 3.3291 11.2047 20 6 6.2598 5.2346 10.8216 21 7 6.4480 5.5075 12.0932 22 14 6.7939 6.4579 9.5148 23 1 5.6761 7.3914 9.2241 24 1 7.9658 7.2266 10.0057 25 1 7.1645 5.7282 8.2756 26 6 4.0159 0.5141 5.7639 27 6 2.0400 -0.7212 -1.2494 28 6 3.0741 0.0053 -2.1117 29 6 1.6357 -0.1495 -2.6097 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 3.1263 -0.7995 1.2055 34 1 1.6054 -1.7198 1.2951 35 1 2.4847 -1.2181 3.7909 36 1 0.1463 -1.0853 5.5334 37 1 -0.1027 0.5466 6.1976 38 1 -0.5094 0.2056 4.4981 39 1 2.5003 -0.9807 6.3775 40 1 2.1967 2.0706 6.8619 41 1 2.0778 0.7286 8.0829 42 1 5.6313 2.2646 6.7873 43 1 4.0301 3.0388 6.8595 44 1 5.7434 4.3872 8.4439 45 1 6.8646 6.3440 12.3533 46 1 4.7078 -0.3021 5.5556 47 1 4.0889 1.3278 5.0424 48 1 2.1266 -1.8044 -1.1643 49 1 3.3908 0.9971 -1.7894 50 1 3.8415 -0.6000 -2.5943 51 1 1.4567 -0.8565 -3.4198 52 1 1.0060 0.7403 -2.6146 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001506677098.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:57 Heat of formation + Delta-G solvation = -21.069447 kcal Electronic energy + Delta-G solvation = -28904.540635 eV Core-core repulsion = 24905.694877 eV Total energy + Delta-G solvation = -3998.845758 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.69421 -39.80084 -38.28230 -37.87320 -35.51873 -33.90618 -33.52710 -31.79899 -31.54095 -29.67090 -28.00009 -26.09738 -25.87296 -24.42309 -23.74958 -22.66285 -21.79630 -20.73087 -20.15427 -19.67677 -19.32243 -18.32207 -17.26713 -16.80789 -16.13599 -15.83683 -15.68059 -15.49116 -15.33155 -14.89159 -14.75251 -14.32259 -14.08268 -13.72059 -13.55395 -13.42667 -13.32089 -13.03118 -12.82789 -12.65747 -12.50691 -12.30899 -12.17149 -12.03887 -11.95937 -11.72352 -11.50145 -11.41210 -11.16748 -11.13707 -10.97525 -10.91265 -10.70550 -10.64087 -10.58095 -10.31207 -9.95422 -9.88734 -9.53819 -9.33830 -8.79873 -8.27246 -8.14923 -6.28701 -3.79862 2.40488 2.84774 3.03966 3.08004 3.16141 3.39115 3.76661 3.84722 4.12118 4.15044 4.28673 4.34849 4.48435 4.50827 4.56730 4.73791 4.76154 4.86076 4.96994 5.01165 5.10044 5.15587 5.17808 5.21416 5.24691 5.27892 5.34838 5.37090 5.45746 5.48652 5.50317 5.56330 5.57055 5.58864 5.63411 5.71288 5.72448 5.82005 5.88547 5.96614 5.97298 6.02156 6.08044 6.18381 6.29421 6.48704 7.07276 7.24594 7.60818 7.99663 8.17025 8.63347 8.98225 9.45372 9.87459 10.84591 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.016633 B = 0.001907 C = 0.001786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.046260 B =14678.784361 C =15674.468468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.044 4.044 3 H 0.078 0.922 4 C -0.135 4.135 5 C 0.513 3.487 6 O -0.537 6.537 7 N -0.725 5.725 8 C 0.150 3.850 9 H 0.087 0.913 10 C -0.161 4.161 11 C -0.126 4.126 12 C 0.022 3.978 13 N -0.449 5.449 14 C 0.007 3.993 15 C 0.456 3.544 16 O -0.557 6.557 17 N -0.594 5.594 18 C -0.304 4.304 19 H 0.119 0.881 20 C 0.041 3.959 21 N -0.883 5.883 22 Si 0.879 3.121 23 H -0.271 1.271 24 H -0.277 1.277 25 H -0.270 1.270 26 C 0.005 3.995 27 C -0.150 4.150 28 C -0.182 4.182 29 C -0.178 4.178 30 H 0.048 0.952 31 H 0.075 0.925 32 H 0.052 0.948 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.400 0.600 36 H 0.057 0.943 37 H 0.069 0.931 38 H 0.059 0.941 39 H 0.105 0.895 40 H 0.070 0.930 41 H 0.095 0.905 42 H 0.088 0.912 43 H 0.058 0.942 44 H 0.369 0.631 45 H 0.273 0.727 46 H 0.088 0.912 47 H 0.067 0.933 48 H 0.103 0.897 49 H 0.094 0.906 50 H 0.092 0.908 51 H 0.092 0.908 52 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.775 -13.575 -28.826 33.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.063 4.063 3 H 0.097 0.903 4 C -0.175 4.175 5 C 0.300 3.700 6 O -0.414 6.414 7 N -0.376 5.376 8 C 0.045 3.955 9 H 0.105 0.895 10 C -0.219 4.219 11 C -0.145 4.145 12 C -0.107 4.107 13 N -0.171 5.171 14 C -0.125 4.125 15 C 0.241 3.759 16 O -0.438 6.438 17 N -0.235 5.235 18 C -0.432 4.432 19 H 0.137 0.863 20 C -0.162 4.162 21 N -0.523 5.523 22 Si 0.706 3.294 23 H -0.197 1.197 24 H -0.202 1.202 25 H -0.195 1.195 26 C -0.124 4.124 27 C -0.168 4.168 28 C -0.219 4.219 29 C -0.215 4.215 30 H 0.067 0.933 31 H 0.093 0.907 32 H 0.071 0.929 33 H 0.112 0.888 34 H 0.111 0.889 35 H 0.234 0.766 36 H 0.076 0.924 37 H 0.088 0.912 38 H 0.078 0.922 39 H 0.123 0.877 40 H 0.088 0.912 41 H 0.114 0.886 42 H 0.106 0.894 43 H 0.076 0.924 44 H 0.202 0.798 45 H 0.083 0.917 46 H 0.106 0.894 47 H 0.085 0.915 48 H 0.122 0.878 49 H 0.113 0.887 50 H 0.111 0.889 51 H 0.111 0.889 52 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -10.041 -13.591 -27.629 32.387 hybrid contribution 0.595 1.299 -1.437 2.026 sum -9.446 -12.292 -29.066 32.942 Atomic orbital electron populations 1.21920 0.94382 1.01453 1.02977 1.20450 0.96406 0.98962 0.90465 0.90349 1.21727 1.03057 1.00166 0.92563 1.20702 0.78970 0.85734 0.84620 1.90684 1.39756 1.24400 1.86588 1.46108 1.58202 1.27588 1.05718 1.21032 0.93904 0.97009 0.83531 0.89457 1.22132 0.96036 1.01839 1.01941 1.23339 0.94387 1.01497 0.95297 1.23975 0.90608 0.97630 0.98511 1.68410 1.07292 1.22757 1.18618 1.22516 1.00717 0.91861 0.97414 1.19588 0.83787 0.83150 0.89383 1.90557 1.53435 1.47942 1.51822 1.42231 1.55731 1.17393 1.08106 1.19426 1.37473 1.04386 0.81940 0.86321 1.25028 0.97586 0.97340 0.96242 1.69620 1.43108 1.24866 1.14699 0.86681 0.79384 0.81938 0.81434 1.19668 1.20180 1.19549 1.23967 0.96308 1.00463 0.91629 1.22361 1.03757 0.99068 0.91640 1.23043 0.92517 1.02142 1.04170 1.22926 0.98140 1.03380 0.97081 0.93335 0.90652 0.92888 0.88759 0.88915 0.76595 0.92383 0.91249 0.92229 0.87688 0.91202 0.88616 0.89386 0.92355 0.79813 0.91664 0.89385 0.91476 0.87840 0.88738 0.88923 0.88939 0.88721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 8.77 37.16 0.33 -0.83 16 2 C -0.04 -0.31 2.19 -90.62 -0.20 -0.51 16 3 H 0.08 0.69 7.71 -51.93 -0.40 0.29 16 4 C -0.14 -0.79 5.16 -27.88 -0.14 -0.93 16 5 C 0.51 4.47 7.51 -10.98 -0.08 4.39 16 6 O -0.54 -6.74 13.64 5.55 0.08 -6.66 16 7 N -0.72 -5.26 4.94 -53.80 -0.27 -5.52 16 8 C 0.15 1.34 2.29 -67.93 -0.16 1.19 16 9 H 0.09 0.97 7.48 -51.93 -0.39 0.58 16 10 C -0.16 -1.40 9.44 37.16 0.35 -1.05 16 11 C -0.13 -1.22 3.35 -89.68 -0.30 -1.52 16 12 C 0.02 0.29 7.42 -2.63 -0.02 0.27 16 13 N -0.45 -6.99 5.65 -239.51 -1.35 -8.35 16 14 C 0.01 0.12 5.28 -4.98 -0.03 0.09 16 15 C 0.46 10.60 7.83 -10.99 -0.09 10.52 16 16 O -0.56 -15.34 16.01 5.55 0.09 -15.25 16 17 N -0.59 -14.46 5.09 -10.96 -0.06 -14.51 16 18 C -0.30 -8.73 10.16 -14.93 -0.15 -8.88 16 19 H 0.12 3.89 7.39 -52.49 -0.39 3.51 16 20 C 0.04 1.13 5.50 -17.47 -0.10 1.04 16 21 N -0.88 -26.07 13.96 55.50 0.77 -25.30 16 22 Si 0.88 19.65 27.74 -169.99 -4.71 14.94 16 23 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 24 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 25 H -0.27 -5.52 6.52 56.52 0.37 -5.15 16 26 C 0.01 0.06 7.38 -2.76 -0.02 0.04 16 27 C -0.15 -0.87 5.15 -90.62 -0.47 -1.34 16 28 C -0.18 -1.05 10.18 -26.73 -0.27 -1.32 16 29 C -0.18 -1.03 9.73 -26.73 -0.26 -1.29 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.75 5.96 -51.93 -0.31 0.44 16 32 H 0.05 0.39 7.29 -51.93 -0.38 0.01 16 33 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.40 1.93 8.60 -40.82 -0.35 1.58 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.07 0.60 8.08 -51.92 -0.42 0.18 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.07 0.89 7.38 -51.93 -0.38 0.51 16 41 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 42 H 0.09 1.33 8.08 -51.93 -0.42 0.91 16 43 H 0.06 0.87 7.39 -51.93 -0.38 0.49 16 44 H 0.37 7.89 5.76 -40.82 -0.24 7.66 16 45 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 46 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.07 0.70 7.88 -51.93 -0.41 0.29 16 48 H 0.10 0.51 8.11 -51.93 -0.42 0.09 16 49 H 0.09 0.58 8.05 -51.93 -0.42 0.16 16 50 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 51 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 52 H 0.09 0.57 7.61 -51.93 -0.39 0.18 16 LS Contribution 417.59 15.07 6.29 6.29 Total: -1.00 -35.07 417.59 -9.86 -44.92 By element: Atomic # 1 Polarization: 18.66 SS G_CDS: -9.10 Total: 9.56 kcal Atomic # 6 Polarization: 1.48 SS G_CDS: -1.60 Total: -0.12 kcal Atomic # 7 Polarization: -52.78 SS G_CDS: -0.90 Total: -53.68 kcal Atomic # 8 Polarization: -22.08 SS G_CDS: 0.16 Total: -21.91 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -4.71 Total: 14.94 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -35.07 -9.86 -44.92 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506677098.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.851 kcal (2) G-P(sol) polarization free energy of solvation -35.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds