Wall clock time and date at job start Tue Mar 31 2020 20:18:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47090 * 2 1 4 4 C 1.52992 * 109.47400 * 120.00430 * 2 1 3 5 5 C 1.50708 * 109.46923 * 294.99672 * 4 2 1 6 6 O 1.21284 * 119.99891 * 359.72875 * 5 4 2 7 7 N 1.34771 * 120.00105 * 179.97438 * 5 4 2 8 8 C 1.46502 * 120.00119 * 179.73051 * 7 5 4 9 9 H 1.08997 * 109.46790 * 324.99422 * 8 7 5 10 10 C 1.52997 * 109.47070 * 84.99937 * 8 7 5 11 11 C 1.53001 * 109.46928 * 205.00033 * 8 7 5 12 12 C 1.53941 * 113.73353 * 161.86982 * 11 8 7 13 13 N 1.48189 * 86.10045 * 221.95905 * 12 11 8 14 14 C 1.46899 * 111.06950 * 137.52557 * 13 12 11 15 15 C 1.50700 * 109.47343 * 90.56265 * 14 13 12 16 16 O 1.21285 * 120.00149 * 359.97438 * 15 14 13 17 17 N 1.34774 * 119.99658 * 179.97438 * 15 14 13 18 18 C 1.37099 * 119.99855 * 179.97438 * 17 15 14 19 19 H 1.07998 * 120.00214 * 359.97438 * 18 17 15 20 20 C 1.38956 * 120.00201 * 180.02562 * 18 17 15 21 21 N 1.31409 * 120.00060 * 179.97438 * 20 18 17 22 22 Si 1.86803 * 119.99662 * 359.97438 * 20 18 17 23 23 H 1.48503 * 109.47225 * 90.00467 * 22 20 18 24 24 H 1.48497 * 109.46941 * 210.00305 * 22 20 18 25 25 H 1.48503 * 109.47066 * 329.99989 * 22 20 18 26 26 C 1.47957 * 90.79959 * 24.59831 * 13 12 11 27 27 C 1.53009 * 109.47028 * 240.00245 * 2 1 3 28 28 C 1.52998 * 117.49462 * 128.62130 * 27 2 1 29 29 C 1.52997 * 117.49877 * 59.99957 * 27 2 1 30 30 H 1.08998 * 109.47090 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47240 * 299.99780 * 1 2 3 32 32 H 1.08997 * 109.47453 * 59.99934 * 1 2 3 33 33 H 1.09000 * 109.47573 * 175.00243 * 4 2 1 34 34 H 1.08995 * 109.47713 * 54.99716 * 4 2 1 35 35 H 0.97007 * 120.00005 * 359.72974 * 7 5 4 36 36 H 1.08998 * 109.47609 * 60.08772 * 10 8 7 37 37 H 1.09007 * 109.46597 * 180.02562 * 10 8 7 38 38 H 1.08996 * 109.47405 * 300.07676 * 10 8 7 39 39 H 1.08993 * 112.94024 * 293.43725 * 11 8 7 40 40 H 1.09004 * 113.75730 * 336.23885 * 12 11 8 41 41 H 1.08993 * 113.75540 * 107.60086 * 12 11 8 42 42 H 1.09006 * 109.46615 * 210.56175 * 14 13 12 43 43 H 1.08999 * 109.46830 * 330.56144 * 14 13 12 44 44 H 0.97006 * 120.00550 * 0.02562 * 17 15 14 45 45 H 0.97001 * 120.00061 * 179.97438 * 21 20 18 46 46 H 1.09004 * 113.75911 * 221.08118 * 26 13 12 47 47 H 1.09000 * 113.85809 * 89.74112 * 26 13 12 48 48 H 1.08999 * 115.54574 * 274.32933 * 27 2 1 49 49 H 1.08992 * 117.50568 * 359.97438 * 28 27 2 50 50 H 1.09005 * 117.49398 * 145.02557 * 28 27 2 51 51 H 1.09005 * 117.49926 * 214.98176 * 29 27 2 52 52 H 1.09006 * 117.49693 * 359.97438 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.6414 0.0570 2.4765 6 8 1.0156 1.0897 2.3630 7 7 1.9845 -0.3919 3.7001 8 6 1.6021 0.3677 4.8930 9 1 1.6381 1.4343 4.6714 10 6 0.1819 -0.0190 5.3103 11 6 2.5728 0.0506 6.0323 12 6 2.5528 1.0875 7.1700 13 7 4.0294 0.9617 7.1741 14 6 4.6710 2.2769 7.3030 15 6 4.8879 2.5893 8.7612 16 8 4.5415 1.7949 9.6097 17 7 5.4667 3.7516 9.1225 18 6 5.6635 4.0361 10.4491 19 1 5.3544 3.3291 11.2047 20 6 6.2598 5.2346 10.8216 21 7 6.4480 5.5075 12.0932 22 14 6.7939 6.4579 9.5148 23 1 5.6761 7.3914 9.2241 24 1 7.9658 7.2266 10.0057 25 1 7.1645 5.7282 8.2756 26 6 4.0159 0.5141 5.7639 27 6 2.0400 -0.7212 -1.2494 28 6 3.0741 0.0053 -2.1117 29 6 1.6357 -0.1495 -2.6097 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 3.1263 -0.7995 1.2055 34 1 1.6054 -1.7198 1.2951 35 1 2.4847 -1.2181 3.7909 36 1 0.1463 -1.0853 5.5334 37 1 -0.1027 0.5466 6.1976 38 1 -0.5094 0.2056 4.4981 39 1 2.5003 -0.9807 6.3775 40 1 2.1967 2.0706 6.8619 41 1 2.0778 0.7286 8.0829 42 1 5.6313 2.2646 6.7873 43 1 4.0301 3.0388 6.8595 44 1 5.7434 4.3872 8.4439 45 1 6.8646 6.3440 12.3533 46 1 4.7078 -0.3021 5.5556 47 1 4.0889 1.3278 5.0424 48 1 2.1266 -1.8044 -1.1643 49 1 3.3908 0.9971 -1.7894 50 1 3.8415 -0.6000 -2.5943 51 1 1.4567 -0.8565 -3.4198 52 1 1.0060 0.7403 -2.6146 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506677098.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:56 Heat of formation + Delta-G solvation = -47.547571 kcal Electronic energy + Delta-G solvation = -28905.688813 eV Core-core repulsion = 24905.694877 eV Total energy + Delta-G solvation = -3999.993935 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.58826 -40.71003 -39.73309 -38.68635 -36.36711 -35.92997 -34.07398 -33.77325 -32.55473 -30.79384 -28.57514 -27.48956 -27.00076 -25.57340 -24.67919 -23.08308 -22.73352 -21.43623 -21.24188 -20.73023 -20.46338 -20.20185 -17.97643 -17.83009 -17.48890 -16.82632 -16.74417 -16.40225 -16.25453 -16.17306 -15.77421 -15.44180 -15.14806 -14.87052 -14.64248 -14.43356 -14.32577 -14.09075 -13.98699 -13.89296 -13.69425 -13.50251 -13.06009 -12.95981 -12.85726 -12.46682 -12.42909 -12.40746 -12.19581 -12.02462 -12.00572 -11.88940 -11.82533 -11.68420 -11.58744 -11.51593 -11.15225 -10.77186 -10.58799 -10.46433 -10.25677 -10.04476 -9.62081 -8.42526 -6.03273 1.28205 1.33600 1.42455 1.76673 1.95123 2.21265 2.21636 2.62458 2.95566 3.12976 3.20288 3.42115 3.62901 3.75545 3.81543 4.04349 4.06466 4.12325 4.16822 4.18893 4.27271 4.32277 4.37516 4.43536 4.44178 4.49068 4.52273 4.55871 4.68285 4.76740 4.78270 4.81134 4.83945 4.84293 4.96125 4.99978 5.06905 5.09782 5.20616 5.28492 5.31007 5.34126 5.41555 5.46231 5.51832 5.52502 5.64133 5.90250 6.02927 6.58793 6.68458 6.87412 7.38845 7.39917 7.96794 8.75241 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.016633 B = 0.001907 C = 0.001786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.046260 B =14678.784361 C =15674.468468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.043 4.043 3 H 0.054 0.946 4 C -0.128 4.128 5 C 0.510 3.490 6 O -0.581 6.581 7 N -0.713 5.713 8 C 0.159 3.841 9 H 0.067 0.933 10 C -0.157 4.157 11 C -0.099 4.099 12 C 0.012 3.988 13 N -0.486 5.486 14 C 0.020 3.980 15 C 0.452 3.548 16 O -0.608 6.608 17 N -0.594 5.594 18 C -0.329 4.329 19 H 0.054 0.946 20 C -0.015 4.015 21 N -0.934 5.934 22 Si 0.964 3.036 23 H -0.258 1.258 24 H -0.273 1.273 25 H -0.232 1.232 26 C 0.016 3.984 27 C -0.145 4.145 28 C -0.184 4.184 29 C -0.184 4.184 30 H 0.060 0.940 31 H 0.049 0.951 32 H 0.049 0.951 33 H 0.115 0.885 34 H 0.117 0.883 35 H 0.416 0.584 36 H 0.072 0.928 37 H 0.064 0.936 38 H 0.046 0.954 39 H 0.117 0.883 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.116 0.884 43 H 0.085 0.915 44 H 0.388 0.612 45 H 0.279 0.721 46 H 0.106 0.894 47 H 0.078 0.922 48 H 0.120 0.880 49 H 0.086 0.914 50 H 0.104 0.896 51 H 0.102 0.898 52 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.809 -14.340 -32.794 36.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.062 4.062 3 H 0.073 0.927 4 C -0.167 4.167 5 C 0.298 3.702 6 O -0.461 6.461 7 N -0.365 5.365 8 C 0.054 3.946 9 H 0.085 0.915 10 C -0.216 4.216 11 C -0.119 4.119 12 C -0.118 4.118 13 N -0.208 5.208 14 C -0.112 4.112 15 C 0.240 3.760 16 O -0.492 6.492 17 N -0.237 5.237 18 C -0.458 4.458 19 H 0.072 0.928 20 C -0.214 4.214 21 N -0.575 5.575 22 Si 0.784 3.216 23 H -0.182 1.182 24 H -0.198 1.198 25 H -0.156 1.156 26 C -0.112 4.112 27 C -0.163 4.163 28 C -0.221 4.221 29 C -0.221 4.221 30 H 0.079 0.921 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.133 0.867 34 H 0.135 0.865 35 H 0.253 0.747 36 H 0.091 0.909 37 H 0.083 0.917 38 H 0.065 0.935 39 H 0.135 0.865 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.134 0.866 43 H 0.103 0.897 44 H 0.224 0.776 45 H 0.089 0.911 46 H 0.124 0.876 47 H 0.096 0.904 48 H 0.138 0.862 49 H 0.104 0.896 50 H 0.122 0.878 51 H 0.121 0.879 52 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -9.066 -14.399 -31.623 35.911 hybrid contribution 0.215 1.451 -0.101 1.470 sum -8.851 -12.949 -31.724 35.390 Atomic orbital electron populations 1.21860 0.95189 1.01749 1.01577 1.20382 0.95703 0.98144 0.91926 0.92725 1.21742 1.04381 1.00427 0.90171 1.21238 0.78111 0.85293 0.85555 1.90681 1.41737 1.26465 1.87173 1.45962 1.57873 1.27843 1.04794 1.20777 0.93811 0.96191 0.83861 0.91473 1.22088 0.95557 1.02688 1.01251 1.23123 0.93971 1.00952 0.93827 1.24013 0.89592 0.99070 0.99081 1.68368 1.08246 1.22069 1.22164 1.22441 1.02990 0.93637 0.92116 1.20912 0.81301 0.81734 0.92061 1.90530 1.54916 1.49434 1.54319 1.42074 1.56417 1.18492 1.06678 1.19002 1.39399 1.04274 0.83120 0.92765 1.26106 0.96631 0.99297 0.99322 1.69802 1.43882 1.26000 1.17795 0.85375 0.79075 0.78394 0.78738 1.18218 1.19833 1.15583 1.24042 0.97064 1.01086 0.89054 1.22351 1.03491 0.99705 0.90788 1.23082 0.92756 1.02004 1.04239 1.22979 0.98133 1.03412 0.97616 0.92101 0.93155 0.93180 0.86686 0.86469 0.74725 0.90939 0.91694 0.93458 0.86468 0.90859 0.90863 0.86622 0.89731 0.77619 0.91137 0.87559 0.90352 0.86158 0.89551 0.87807 0.87915 0.89609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 8.77 71.98 0.63 -1.52 16 2 C -0.04 -0.53 2.19 -10.79 -0.02 -0.55 16 3 H 0.05 0.94 7.71 -2.39 -0.02 0.92 16 4 C -0.13 -1.11 5.16 29.85 0.15 -0.96 16 5 C 0.51 7.88 7.51 87.66 0.66 8.54 16 6 O -0.58 -14.32 13.64 -3.04 -0.04 -14.36 16 7 N -0.71 -8.36 4.94 -442.53 -2.19 -10.54 16 8 C 0.16 2.55 2.29 44.99 0.10 2.66 16 9 H 0.07 1.41 7.48 -2.39 -0.02 1.39 16 10 C -0.16 -2.54 9.44 71.98 0.68 -1.86 16 11 C -0.10 -1.70 3.35 -10.15 -0.03 -1.73 16 12 C 0.01 0.31 7.42 86.37 0.64 0.95 16 13 N -0.49 -14.31 5.65 -911.67 -5.15 -19.46 16 14 C 0.02 0.63 5.28 85.56 0.45 1.08 16 15 C 0.45 21.16 7.83 87.66 0.69 21.84 16 16 O -0.61 -34.94 16.01 -3.04 -0.05 -34.99 16 17 N -0.59 -28.87 5.09 -306.99 -1.56 -30.44 16 18 C -0.33 -19.70 10.16 84.04 0.85 -18.84 16 19 H 0.05 3.86 7.39 -2.91 -0.02 3.84 16 20 C -0.02 -0.85 5.50 84.93 0.47 -0.38 16 21 N -0.93 -57.08 13.96 21.66 0.30 -56.77 16 22 Si 0.96 39.53 27.74 68.60 1.90 41.43 16 23 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 24 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 25 H -0.23 -8.07 6.52 99.48 0.65 -7.42 16 26 C 0.02 0.29 7.38 86.41 0.64 0.93 16 27 C -0.15 -1.34 5.15 -10.79 -0.06 -1.39 16 28 C -0.18 -1.78 10.18 30.59 0.31 -1.47 16 29 C -0.18 -1.84 9.73 30.59 0.30 -1.54 16 30 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.05 1.01 5.96 -2.39 -0.01 1.00 16 32 H 0.05 0.73 7.29 -2.39 -0.02 0.71 16 33 H 0.12 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.12 0.50 8.14 -2.39 -0.02 0.48 16 35 H 0.42 2.37 8.60 -92.70 -0.80 1.57 16 36 H 0.07 0.95 8.14 -2.39 -0.02 0.94 16 37 H 0.06 1.10 8.08 -2.38 -0.02 1.08 16 38 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 40 H 0.07 1.82 7.38 -2.39 -0.02 1.80 16 41 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 42 H 0.12 3.04 8.08 -2.38 -0.02 3.02 16 43 H 0.08 2.26 7.39 -2.39 -0.02 2.24 16 44 H 0.39 15.66 5.76 -92.70 -0.53 15.12 16 45 H 0.28 15.56 8.31 -92.71 -0.77 14.79 16 46 H 0.11 1.62 8.14 -2.38 -0.02 1.60 16 47 H 0.08 1.32 7.88 -2.39 -0.02 1.30 16 48 H 0.12 0.74 8.11 -2.39 -0.02 0.72 16 49 H 0.09 0.97 8.05 -2.39 -0.02 0.95 16 50 H 0.10 0.77 8.14 -2.38 -0.02 0.75 16 51 H 0.10 0.80 8.14 -2.38 -0.02 0.78 16 52 H 0.09 0.99 7.61 -2.38 -0.02 0.97 16 Total: -1.00 -83.64 417.59 -0.80 -84.44 By element: Atomic # 1 Polarization: 35.42 SS G_CDS: -0.47 Total: 34.95 kcal Atomic # 6 Polarization: -0.72 SS G_CDS: 6.46 Total: 5.74 kcal Atomic # 7 Polarization: -108.61 SS G_CDS: -8.60 Total: -117.21 kcal Atomic # 8 Polarization: -49.26 SS G_CDS: -0.09 Total: -49.35 kcal Atomic # 14 Polarization: 39.53 SS G_CDS: 1.90 Total: 41.43 kcal Total: -83.64 -0.80 -84.44 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506677098.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.894 kcal (2) G-P(sol) polarization free energy of solvation -83.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds