Wall clock time and date at job start Tue Mar 31 2020 20:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.47303 * 2 1 4 4 C 1.53001 * 109.47247 * 239.99323 * 2 1 3 5 5 N 1.46491 * 109.47239 * 185.00047 * 4 2 1 6 6 C 1.46509 * 120.00059 * 270.00312 * 5 4 2 7 7 C 1.34780 * 120.00292 * 90.00233 * 5 4 2 8 8 O 1.21279 * 119.99382 * 359.97438 * 7 5 4 9 9 C 1.50698 * 120.00420 * 179.97438 * 7 5 4 10 10 C 1.53001 * 109.47030 * 179.97438 * 9 7 5 11 11 C 1.50703 * 109.46722 * 180.02562 * 10 9 7 12 12 N 1.30252 * 125.61960 * 90.02708 * 11 10 9 13 13 C 1.34478 * 108.70046 * 179.73456 * 12 11 10 14 14 C 1.34330 * 107.66857 * 0.38866 * 13 12 11 15 15 C 1.50697 * 126.44172 * 179.87921 * 14 13 12 16 16 C 1.52997 * 109.47466 * 59.71558 * 15 14 13 17 17 C 1.53006 * 109.47239 * 299.71270 * 15 14 13 18 18 C 1.52999 * 109.46961 * 179.71909 * 15 14 13 19 19 O 1.33969 * 125.62003 * 269.99947 * 11 10 9 20 20 N 1.46507 * 109.46707 * 119.99546 * 2 1 3 21 21 C 1.36936 * 120.00092 * 274.99762 * 20 2 1 22 22 H 1.08000 * 119.99778 * 0.02562 * 21 20 2 23 23 C 1.38806 * 120.00035 * 180.02562 * 21 20 2 24 24 N 1.31615 * 120.00137 * 179.97438 * 23 21 20 25 25 Si 1.86800 * 120.00154 * 0.02562 * 23 21 20 26 26 H 1.48502 * 109.47316 * 89.99659 * 25 23 21 27 27 H 1.48497 * 109.47231 * 209.99858 * 25 23 21 28 28 H 1.48502 * 109.47061 * 329.99998 * 25 23 21 29 29 H 1.08996 * 109.47037 * 300.00268 * 1 2 3 30 30 H 1.09002 * 109.46964 * 60.00459 * 1 2 3 31 31 H 1.08999 * 109.47305 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.46815 * 65.00120 * 4 2 1 33 33 H 1.08998 * 109.46904 * 305.00329 * 4 2 1 34 34 H 1.08995 * 109.46726 * 269.99801 * 6 5 4 35 35 H 1.08993 * 109.46936 * 29.99895 * 6 5 4 36 36 H 1.09003 * 109.47030 * 149.99752 * 6 5 4 37 37 H 1.09000 * 109.46980 * 60.00316 * 9 7 5 38 38 H 1.09001 * 109.47002 * 300.00509 * 9 7 5 39 39 H 1.08994 * 109.47198 * 60.00092 * 10 9 7 40 40 H 1.08999 * 109.47010 * 299.99957 * 10 9 7 41 41 H 1.07999 * 126.16577 * 180.27130 * 13 12 11 42 42 H 1.09002 * 109.47153 * 59.99773 * 16 15 14 43 43 H 1.09001 * 109.46832 * 299.99964 * 16 15 14 44 44 H 1.09004 * 109.47261 * 179.97438 * 16 15 14 45 45 H 1.08993 * 109.46955 * 180.02562 * 17 15 14 46 46 H 1.09000 * 109.47050 * 300.00336 * 17 15 14 47 47 H 1.09001 * 109.47002 * 60.00070 * 17 15 14 48 48 H 1.09002 * 109.46716 * 299.99650 * 18 15 14 49 49 H 1.09000 * 109.47486 * 59.99568 * 18 15 14 50 50 H 1.09001 * 109.47362 * 180.02562 * 18 15 14 51 51 H 0.97003 * 119.99617 * 95.00557 * 20 2 1 52 52 H 0.97003 * 120.00380 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7214 -1.2492 5 7 3.5000 -0.8265 -1.1905 6 6 4.3344 0.2339 -1.7612 7 6 4.0758 -1.8988 -0.6114 8 8 3.3851 -2.7764 -0.1385 9 6 5.5777 -2.0072 -0.5515 10 6 5.9673 -3.3089 0.1519 11 6 7.4693 -3.4169 0.2123 12 7 8.2240 -2.9687 1.1746 13 6 9.5062 -3.2519 0.8845 14 6 9.5258 -3.8865 -0.2993 15 6 10.7466 -4.3926 -1.0235 16 6 11.4749 -5.4117 -0.1450 17 6 11.6819 -3.2205 -1.3274 18 6 10.3224 -5.0594 -2.3336 19 8 8.2482 -3.9904 -0.7146 20 7 2.0183 -0.6906 1.1963 21 6 2.1491 -0.0074 2.3758 22 1 1.8919 1.0405 2.4243 23 6 2.6122 -0.6615 3.5091 24 7 2.7384 -0.0047 4.6427 25 14 3.0577 -2.4736 3.4251 26 1 4.4905 -2.6148 3.0612 27 1 2.8185 -3.1041 4.7482 28 1 2.2182 -3.1427 2.3990 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.7517 -0.1585 -2.1370 33 1 1.6054 -1.7199 -1.2950 34 1 4.5425 0.0090 -2.8072 35 1 3.8091 1.1864 -1.6919 36 1 5.2722 0.2952 -1.2091 37 1 5.9813 -1.1601 0.0031 38 1 5.9827 -2.0052 -1.5635 39 1 5.5637 -4.1562 -0.4022 40 1 5.5623 -3.3103 1.1639 41 1 10.3655 -3.0108 1.4927 42 1 10.8085 -6.2468 0.0715 43 1 11.7770 -4.9366 0.7884 44 1 12.3576 -5.7782 -0.6690 45 1 12.5646 -3.5866 -1.8516 46 1 11.1631 -2.4945 -1.9533 47 1 11.9841 -2.7454 -0.3941 48 1 9.6561 -5.8944 -2.1171 49 1 9.8036 -4.3334 -2.9595 50 1 11.2053 -5.4259 -2.8573 51 1 2.2490 -1.6317 1.1528 52 1 3.0623 -0.4617 5.4346 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507090521.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:16 Heat of formation + Delta-G solvation = -12.070167 kcal Electronic energy + Delta-G solvation = -30424.955032 eV Core-core repulsion = 26426.499512 eV Total energy + Delta-G solvation = -3998.455520 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -43.42953 -39.77335 -37.42083 -36.28670 -34.82484 -34.54894 -33.55805 -31.89341 -29.45986 -28.97182 -27.75089 -27.72324 -27.14048 -26.19184 -24.26874 -23.14995 -22.83028 -21.28486 -19.99248 -19.85947 -18.92847 -17.70719 -17.25177 -16.73194 -16.50738 -15.88118 -15.74251 -15.27995 -14.75039 -14.48807 -14.42574 -14.19504 -13.68476 -13.56182 -13.49772 -13.19237 -12.83025 -12.77219 -12.63319 -12.53073 -12.48123 -12.30654 -12.18882 -12.11662 -12.00095 -11.90747 -11.51637 -11.46826 -11.40599 -11.33799 -11.25298 -11.16265 -10.68865 -10.57299 -10.45632 -10.40526 -9.86682 -9.54519 -9.38945 -8.79006 -8.70947 -8.27448 -7.08995 -5.63352 -2.96622 1.36776 2.49196 2.66462 2.92470 3.30592 3.57251 3.63384 3.73956 3.96319 4.26658 4.46251 4.47662 4.71761 4.77516 4.79822 4.93267 4.96929 5.09931 5.17125 5.18440 5.24052 5.29473 5.33115 5.38644 5.41003 5.43165 5.43611 5.51489 5.62026 5.63289 5.69032 5.70404 5.75849 5.81597 5.83688 5.89114 5.92831 5.94824 6.02707 6.06583 6.21035 6.28435 6.29484 6.49393 6.72464 6.83315 7.07486 7.64013 7.75943 8.15219 8.48148 8.57586 9.41296 10.13782 10.35838 11.54779 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014246 B = 0.003085 C = 0.002734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.011164 B = 9073.857518 C =10239.731605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.160 3.840 3 H 0.052 0.948 4 C 0.106 3.894 5 N -0.604 5.604 6 C 0.081 3.919 7 C 0.525 3.475 8 O -0.534 6.534 9 C -0.134 4.134 10 C -0.013 4.013 11 C 0.196 3.804 12 N -0.474 5.474 13 C -0.036 4.036 14 C -0.044 4.044 15 C 0.020 3.980 16 C -0.141 4.141 17 C -0.140 4.140 18 C -0.144 4.144 19 O -0.197 6.197 20 N -0.747 5.747 21 C -0.239 4.239 22 H 0.085 0.915 23 C 0.005 3.995 24 N -0.937 5.937 25 Si 0.875 3.125 26 H -0.280 1.280 27 H -0.298 1.298 28 H -0.266 1.266 29 H 0.059 0.941 30 H 0.038 0.962 31 H 0.046 0.954 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.051 0.949 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.104 0.896 38 H 0.093 0.907 39 H 0.100 0.900 40 H 0.117 0.883 41 H 0.179 0.821 42 H 0.060 0.940 43 H 0.063 0.937 44 H 0.069 0.931 45 H 0.068 0.932 46 H 0.060 0.940 47 H 0.063 0.937 48 H 0.060 0.940 49 H 0.061 0.939 50 H 0.064 0.936 51 H 0.376 0.624 52 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.507 -6.571 -19.204 26.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.049 3.951 3 H 0.070 0.930 4 C -0.017 4.017 5 N -0.337 5.337 6 C -0.063 4.063 7 C 0.313 3.687 8 O -0.411 6.411 9 C -0.175 4.175 10 C -0.051 4.051 11 C -0.010 4.010 12 N -0.202 5.202 13 C -0.175 4.175 14 C -0.098 4.098 15 C 0.020 3.980 16 C -0.198 4.198 17 C -0.197 4.197 18 C -0.201 4.201 19 O -0.084 6.084 20 N -0.394 5.394 21 C -0.369 4.369 22 H 0.103 0.897 23 C -0.190 4.190 24 N -0.586 5.586 25 Si 0.705 3.295 26 H -0.207 1.207 27 H -0.225 1.225 28 H -0.191 1.191 29 H 0.078 0.922 30 H 0.057 0.943 31 H 0.065 0.935 32 H 0.094 0.906 33 H 0.099 0.901 34 H 0.070 0.930 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.123 0.877 38 H 0.111 0.889 39 H 0.118 0.882 40 H 0.135 0.865 41 H 0.196 0.804 42 H 0.079 0.921 43 H 0.082 0.918 44 H 0.088 0.912 45 H 0.087 0.913 46 H 0.079 0.921 47 H 0.082 0.918 48 H 0.079 0.921 49 H 0.080 0.920 50 H 0.083 0.917 51 H 0.213 0.787 52 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 15.904 -6.584 -18.296 25.120 hybrid contribution 0.636 -1.324 -0.277 1.494 sum 16.539 -7.908 -18.572 26.096 Atomic orbital electron populations 1.22381 0.98625 1.01016 1.00455 1.20596 0.92178 0.95829 0.86523 0.93033 1.21924 0.78976 1.02262 0.98537 1.47579 1.06994 1.20797 1.58309 1.21761 0.95810 0.91175 0.97541 1.20190 0.89787 0.81601 0.77159 1.90671 1.64684 1.40106 1.45626 1.21620 0.93974 0.99321 1.02558 1.19922 0.80806 0.98848 1.05560 1.26294 0.95962 0.94866 0.83890 1.70562 1.01968 1.21146 1.26508 1.23010 0.95226 1.02961 0.96306 1.23321 0.83706 1.05319 0.97427 1.19089 0.88001 0.96045 0.94900 1.21938 1.00114 0.98232 0.99494 1.21932 0.98534 0.96848 1.02397 1.21868 1.01721 1.00968 0.95583 1.84382 1.16665 1.61904 1.45438 1.43047 1.79377 1.10518 1.06482 1.19036 1.36586 0.95278 0.86032 0.89696 1.24604 1.01479 0.97425 0.95513 1.69708 1.52997 1.35590 1.00268 0.86662 0.79316 0.87096 0.76397 1.20685 1.22474 1.19146 0.92172 0.94301 0.93464 0.90631 0.90149 0.93021 0.90794 0.91145 0.87749 0.88865 0.88167 0.86451 0.80373 0.92104 0.91826 0.91245 0.91263 0.92077 0.91824 0.92058 0.92032 0.91665 0.78658 0.93294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.92 9.49 37.16 0.35 -2.56 16 2 C 0.16 3.11 3.20 -67.92 -0.22 2.89 16 3 H 0.05 1.02 8.08 -51.93 -0.42 0.60 16 4 C 0.11 1.67 5.14 -4.05 -0.02 1.65 16 5 N -0.60 -9.27 2.77 -181.57 -0.50 -9.77 16 6 C 0.08 0.90 10.24 59.85 0.61 1.51 16 7 C 0.52 9.11 6.97 -10.99 -0.08 9.04 16 8 O -0.53 -11.22 13.14 5.56 0.07 -11.14 16 9 C -0.13 -1.92 4.23 -27.88 -0.12 -2.04 16 10 C -0.01 -0.20 5.13 -27.88 -0.14 -0.35 16 11 C 0.20 3.02 7.60 -12.95 -0.10 2.92 16 12 N -0.47 -7.92 11.29 -11.10 -0.13 -8.05 16 13 C -0.04 -0.47 11.24 -17.77 -0.20 -0.67 16 14 C -0.04 -0.52 5.70 -35.69 -0.20 -0.72 16 15 C 0.02 0.16 0.93 -155.66 -0.15 0.02 16 16 C -0.14 -0.94 8.35 37.16 0.31 -0.63 16 17 C -0.14 -0.91 8.36 37.16 0.31 -0.59 16 18 C -0.14 -1.06 8.06 37.16 0.30 -0.76 16 19 O -0.20 -2.68 10.24 5.37 0.06 -2.62 16 20 N -0.75 -18.66 4.33 -53.42 -0.23 -18.89 16 21 C -0.24 -7.03 10.41 -15.06 -0.16 -7.19 16 22 H 0.09 2.64 8.06 -52.49 -0.42 2.22 16 23 C 0.01 0.16 5.50 -17.43 -0.10 0.07 16 24 N -0.94 -30.80 13.97 55.49 0.78 -30.02 16 25 Si 0.87 24.37 27.58 -169.99 -4.69 19.69 16 26 H -0.28 -7.67 6.68 56.52 0.38 -7.29 16 27 H -0.30 -8.38 7.11 56.52 0.40 -7.98 16 28 H -0.27 -7.36 6.52 56.52 0.37 -7.00 16 29 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 30 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.08 0.90 8.07 -51.93 -0.42 0.49 16 33 H 0.08 1.36 7.42 -51.93 -0.39 0.97 16 34 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.78 8.07 -51.93 -0.42 0.36 16 36 H 0.07 0.76 6.44 -51.93 -0.33 0.43 16 37 H 0.10 1.55 7.40 -51.93 -0.38 1.17 16 38 H 0.09 1.03 8.11 -51.93 -0.42 0.61 16 39 H 0.10 1.39 8.10 -51.93 -0.42 0.97 16 40 H 0.12 2.20 7.68 -51.93 -0.40 1.81 16 41 H 0.18 1.85 8.06 -52.49 -0.42 1.43 16 42 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 43 H 0.06 0.41 8.01 -51.93 -0.42 -0.01 16 44 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.06 0.40 8.02 -51.93 -0.42 -0.02 16 48 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 49 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 50 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 51 H 0.38 9.70 2.88 -40.82 -0.12 9.59 16 52 H 0.26 8.13 8.31 -40.82 -0.34 7.79 16 LS Contribution 416.45 15.07 6.28 6.28 Total: -1.00 -37.40 416.45 -7.20 -44.60 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: -9.24 Total: 7.37 kcal Atomic # 6 Polarization: 2.15 SS G_CDS: 0.41 Total: 2.56 kcal Atomic # 7 Polarization: -66.65 SS G_CDS: -0.09 Total: -66.73 kcal Atomic # 8 Polarization: -13.89 SS G_CDS: 0.13 Total: -13.76 kcal Atomic # 14 Polarization: 24.37 SS G_CDS: -4.69 Total: 19.69 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -37.40 -7.20 -44.60 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507090521.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.530 kcal (2) G-P(sol) polarization free energy of solvation -37.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds