Wall clock time and date at job start Tue Mar 31 2020 20:10:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.46842 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99753 * 2 1 3 5 5 C 1.53007 * 109.47354 * 185.00171 * 4 2 1 6 6 N 1.46494 * 109.46950 * 180.02562 * 5 4 2 7 7 C 1.34774 * 119.99975 * 179.97438 * 6 5 4 8 8 O 1.21289 * 119.99879 * 0.02562 * 7 6 5 9 9 C 1.50700 * 120.00540 * 180.02562 * 7 6 5 10 10 H 1.08999 * 115.55785 * 61.43160 * 9 7 6 11 11 C 1.53092 * 117.51335 * 207.22683 * 9 7 6 12 12 C 1.52548 * 59.89235 * 107.45260 * 11 9 7 13 13 C 1.53882 * 120.82778 * 110.20117 * 12 11 9 14 14 C 1.54993 * 104.05958 * 167.64296 * 13 12 11 15 15 C 1.54929 * 102.81804 * 322.42609 * 14 13 12 16 16 C 1.53481 * 121.08977 * 249.57203 * 12 11 9 17 17 N 1.46904 * 109.47630 * 240.00146 * 2 1 3 18 18 C 1.46901 * 110.99641 * 84.99561 * 17 2 1 19 19 C 1.50703 * 109.46769 * 179.97438 * 18 17 2 20 20 O 1.21295 * 119.99880 * 0.02562 * 19 18 17 21 21 N 1.34776 * 119.99618 * 179.97438 * 19 18 17 22 22 C 1.37103 * 119.99744 * 180.02562 * 21 19 18 23 23 H 1.08001 * 119.99824 * 0.02562 * 22 21 19 24 24 C 1.38952 * 120.00014 * 180.02562 * 22 21 19 25 25 N 1.31411 * 119.99759 * 0.02562 * 24 22 21 26 26 Si 1.86796 * 119.99862 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.47360 * 59.99876 * 26 24 22 28 28 H 1.48499 * 109.47169 * 180.02562 * 26 24 22 29 29 H 1.48509 * 109.47370 * 299.99995 * 26 24 22 30 30 H 1.09000 * 109.47237 * 60.00569 * 1 2 3 31 31 H 1.09005 * 109.46641 * 179.97438 * 1 2 3 32 32 H 1.08990 * 109.47254 * 299.99548 * 1 2 3 33 33 H 1.09002 * 109.46970 * 65.00811 * 4 2 1 34 34 H 1.09001 * 109.47323 * 305.00715 * 4 2 1 35 35 H 1.09002 * 109.46560 * 60.00389 * 5 4 2 36 36 H 1.09004 * 109.46961 * 300.00176 * 5 4 2 37 37 H 0.97003 * 120.00306 * 0.02562 * 6 5 4 38 38 H 1.08993 * 117.50895 * 359.97438 * 11 9 7 39 39 H 1.08999 * 117.50662 * 214.91370 * 11 9 7 40 40 H 1.09005 * 110.50797 * 48.99961 * 13 12 11 41 41 H 1.08997 * 110.51090 * 286.28689 * 13 12 11 42 42 H 1.09001 * 110.73894 * 204.09842 * 14 13 12 43 43 H 1.08993 * 110.74282 * 80.76159 * 14 13 12 44 44 H 1.09004 * 110.47632 * 156.40809 * 15 14 13 45 45 H 1.08997 * 110.48528 * 278.90886 * 15 14 13 46 46 H 1.09004 * 110.07018 * 96.68283 * 16 12 11 47 47 H 1.09004 * 110.11532 * 335.18159 * 16 12 11 48 48 H 1.00898 * 110.99552 * 321.04862 * 17 2 1 49 49 H 1.09002 * 109.47565 * 299.99943 * 18 17 2 50 50 H 1.08999 * 109.47241 * 60.00764 * 18 17 2 51 51 H 0.96996 * 120.00404 * 0.02562 * 21 19 18 52 52 H 0.97003 * 119.99279 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5649 -0.6132 1.3137 6 7 4.0532 -1.3042 2.5096 7 6 5.3741 -1.3405 2.7747 8 8 6.1585 -0.8006 2.0235 9 6 5.8767 -2.0519 4.0045 10 1 5.6625 -3.1197 4.0506 11 6 7.1956 -1.5675 4.6124 12 6 5.8749 -1.2755 5.3179 13 6 5.5184 -1.9709 6.6435 14 6 4.2937 -1.1783 7.1670 15 6 4.6344 0.2807 6.7728 16 6 5.3152 0.1516 5.3932 17 7 2.0198 -0.6925 -1.1994 18 6 2.0825 0.2227 -2.3468 19 6 2.5887 -0.5214 -3.5557 20 8 2.8691 -1.6983 -3.4699 21 7 2.7288 0.1208 -4.7323 22 6 3.1888 -0.5562 -5.8322 23 1 3.4385 -1.6042 -5.7558 24 6 3.3337 0.1059 -7.0452 25 7 3.0304 1.3812 -7.1379 26 14 3.9598 -0.8167 -8.5439 27 1 3.0380 -1.9384 -8.8554 28 1 4.0241 0.1086 -9.7036 29 1 5.3159 -1.3536 -8.2639 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8899 33 1 1.7518 -1.7715 1.2056 34 1 1.6053 -0.2617 2.1370 35 1 3.8532 0.4371 1.3574 36 1 3.9996 -1.0727 0.4260 37 1 3.4260 -1.7364 3.1102 38 1 7.6998 -0.7346 4.1225 39 1 7.8496 -2.3168 5.0583 40 1 6.3481 -1.9004 7.3470 41 1 5.2523 -3.0133 6.4684 42 1 4.2051 -1.2751 8.2491 43 1 3.3802 -1.5085 6.6727 44 1 3.7252 0.8769 6.6951 45 1 5.3181 0.7221 7.4980 46 1 4.5851 0.3095 4.5994 47 1 6.1245 0.8767 5.3062 48 1 1.4497 -1.4978 -1.4101 49 1 1.0871 0.6164 -2.5526 50 1 2.7589 1.0463 -2.1182 51 1 2.5042 1.0619 -4.8010 52 1 3.1313 1.8433 -7.9848 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567235670.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:10:27 Heat of formation + Delta-G solvation = -96.654013 kcal Electronic energy + Delta-G solvation = -28819.621219 eV Core-core repulsion = 24817.497868 eV Total energy + Delta-G solvation = -4002.123351 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.34334 -40.24197 -39.29881 -38.27325 -36.09609 -35.73462 -35.03176 -33.33453 -32.56676 -29.97584 -29.61470 -27.96905 -26.77797 -25.88223 -25.28338 -23.34449 -21.95165 -21.59282 -21.25239 -20.98858 -19.95286 -19.79754 -18.04161 -17.69800 -16.98034 -16.93607 -16.77455 -16.43040 -16.32166 -16.26411 -15.78474 -15.48460 -15.21408 -15.11146 -14.52310 -14.24332 -14.17566 -14.03883 -13.91988 -13.55701 -13.50207 -13.40759 -13.11186 -13.07942 -12.85569 -12.67744 -12.45616 -12.29206 -12.19579 -12.11204 -12.00626 -11.92536 -11.82839 -11.74494 -11.51900 -11.42302 -11.23778 -11.04667 -10.55905 -10.36157 -10.08151 -10.03344 -9.25391 -8.48179 -5.97110 1.38071 1.39707 1.50935 1.53810 2.03880 2.15766 2.27856 2.70679 2.93930 3.18856 3.44785 3.54147 3.63152 3.78978 3.86571 3.87271 4.00254 4.15231 4.21843 4.29792 4.33358 4.36584 4.44372 4.47989 4.55177 4.56152 4.60083 4.73024 4.74473 4.79576 4.87873 4.89596 4.91625 5.00820 5.03339 5.07998 5.11485 5.18637 5.23316 5.24283 5.28188 5.31639 5.38586 5.38826 5.49188 5.51847 5.90667 6.13461 6.46261 6.57722 6.58598 7.10747 7.28268 7.54483 8.10051 8.69023 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.017400 B = 0.001897 C = 0.001777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.780336 B =14758.524647 C =15748.827195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.083 3.917 3 H 0.081 0.919 4 C -0.101 4.101 5 C 0.128 3.872 6 N -0.709 5.709 7 C 0.534 3.466 8 O -0.594 6.594 9 C -0.183 4.183 10 H 0.150 0.850 11 C -0.147 4.147 12 C -0.091 4.091 13 C -0.086 4.086 14 C -0.120 4.120 15 C -0.119 4.119 16 C -0.101 4.101 17 N -0.679 5.679 18 C 0.067 3.933 19 C 0.436 3.564 20 O -0.624 6.624 21 N -0.574 5.574 22 C -0.336 4.336 23 H 0.078 0.922 24 C -0.014 4.014 25 N -0.920 5.920 26 Si 0.994 3.006 27 H -0.270 1.270 28 H -0.269 1.269 29 H -0.274 1.274 30 H 0.049 0.951 31 H 0.060 0.940 32 H 0.084 0.916 33 H 0.075 0.925 34 H 0.101 0.899 35 H 0.048 0.952 36 H 0.044 0.956 37 H 0.416 0.584 38 H 0.079 0.921 39 H 0.124 0.876 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.073 0.927 44 H 0.071 0.929 45 H 0.070 0.930 46 H 0.056 0.944 47 H 0.054 0.946 48 H 0.345 0.655 49 H 0.068 0.932 50 H 0.097 0.903 51 H 0.396 0.604 52 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.413 -1.918 32.268 32.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.027 4.027 3 H 0.099 0.901 4 C -0.139 4.139 5 C 0.004 3.996 6 N -0.361 5.361 7 C 0.322 3.678 8 O -0.474 6.474 9 C -0.204 4.204 10 H 0.168 0.832 11 C -0.185 4.185 12 C -0.091 4.091 13 C -0.123 4.123 14 C -0.157 4.157 15 C -0.156 4.156 16 C -0.138 4.138 17 N -0.311 5.311 18 C -0.066 4.066 19 C 0.224 3.776 20 O -0.510 6.510 21 N -0.211 5.211 22 C -0.465 4.465 23 H 0.096 0.904 24 C -0.214 4.214 25 N -0.561 5.561 26 Si 0.817 3.183 27 H -0.195 1.195 28 H -0.193 1.193 29 H -0.200 1.200 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.103 0.897 33 H 0.094 0.906 34 H 0.120 0.880 35 H 0.067 0.933 36 H 0.062 0.938 37 H 0.252 0.748 38 H 0.098 0.902 39 H 0.142 0.858 40 H 0.100 0.900 41 H 0.100 0.900 42 H 0.100 0.900 43 H 0.092 0.908 44 H 0.090 0.910 45 H 0.089 0.911 46 H 0.075 0.925 47 H 0.073 0.927 48 H 0.164 0.836 49 H 0.086 0.914 50 H 0.115 0.885 51 H 0.230 0.770 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.032 -2.078 31.775 31.908 hybrid contribution -0.660 0.177 -1.615 1.754 sum -2.692 -1.901 30.160 30.340 Atomic orbital electron populations 1.22423 0.95216 1.02727 1.03007 1.21642 0.93909 0.97990 0.89162 0.90052 1.21680 0.92172 1.02246 0.97808 1.21189 0.95676 0.96005 0.86736 1.45883 1.07085 1.56292 1.26806 1.20279 0.82364 0.79022 0.86140 1.90712 1.56985 1.48201 1.51535 1.22416 1.05069 1.01089 0.91797 0.83245 1.23049 0.90323 1.03493 1.01596 1.21944 0.99308 0.96037 0.91822 1.21989 0.98655 0.99145 0.92524 1.22504 0.97771 0.94004 1.01458 1.22336 1.00331 0.97960 0.94997 1.21755 0.99420 0.93766 0.98872 1.60205 1.58694 1.09163 1.03058 1.21524 1.00904 0.95309 0.88826 1.20957 0.83415 0.88049 0.85207 1.90487 1.56674 1.18412 1.85470 1.41938 1.58332 1.12603 1.08237 1.19631 1.42344 0.95957 0.88588 0.90434 1.26063 0.97203 0.96672 1.01440 1.69669 1.48544 1.09648 1.28202 0.84981 0.78647 0.77882 0.76768 1.19498 1.19300 1.19968 0.93196 0.92047 0.89734 0.90612 0.88049 0.93311 0.93799 0.74753 0.90221 0.85795 0.89965 0.90043 0.90040 0.90814 0.91042 0.91093 0.92516 0.92675 0.83605 0.91379 0.88522 0.77001 0.91268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.92 9.16 71.98 0.66 -2.26 16 2 C 0.08 1.75 2.59 44.91 0.12 1.87 16 3 H 0.08 1.71 7.80 -2.38 -0.02 1.69 16 4 C -0.10 -1.76 5.01 30.60 0.15 -1.60 16 5 C 0.13 3.19 5.56 86.38 0.48 3.67 16 6 N -0.71 -14.68 5.44 -463.05 -2.52 -17.20 16 7 C 0.53 14.00 6.29 87.66 0.55 14.55 16 8 O -0.59 -22.41 16.61 -3.06 -0.05 -22.46 16 9 C -0.18 -3.24 6.01 -11.65 -0.07 -3.31 16 10 H 0.15 1.95 8.14 -2.39 -0.02 1.93 16 11 C -0.15 -2.56 9.77 30.47 0.30 -2.26 16 12 C -0.09 -1.25 2.44 -52.01 -0.13 -1.38 16 13 C -0.09 -0.71 6.58 31.57 0.21 -0.50 16 14 C -0.12 -0.85 6.91 31.94 0.22 -0.63 16 15 C -0.12 -1.17 6.84 31.72 0.22 -0.95 16 16 C -0.10 -1.51 6.18 31.22 0.19 -1.32 16 17 N -0.68 -21.17 5.33 -495.56 -2.64 -23.81 16 18 C 0.07 2.36 5.96 85.56 0.51 2.87 16 19 C 0.44 21.56 7.82 87.66 0.69 22.25 16 20 O -0.62 -35.86 15.78 -3.08 -0.05 -35.90 16 21 N -0.57 -30.55 5.29 -306.97 -1.62 -32.18 16 22 C -0.34 -19.71 9.68 84.04 0.81 -18.90 16 23 H 0.08 4.85 7.16 -2.91 -0.02 4.83 16 24 C -0.01 -0.77 5.50 84.93 0.47 -0.31 16 25 N -0.92 -50.87 13.05 21.66 0.28 -50.58 16 26 Si 0.99 44.21 29.55 68.60 2.03 46.23 16 27 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 28 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 29 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 30 H 0.05 0.93 7.45 -2.39 -0.02 0.92 16 31 H 0.06 1.01 8.13 -2.38 -0.02 0.99 16 32 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.05 1.32 8.14 -2.39 -0.02 1.31 16 36 H 0.04 1.51 7.75 -2.39 -0.02 1.49 16 37 H 0.42 5.42 8.47 -92.71 -0.79 4.63 16 38 H 0.08 1.81 7.93 -2.39 -0.02 1.79 16 39 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.08 0.59 8.14 -2.38 -0.02 0.58 16 41 H 0.08 0.51 8.11 -2.39 -0.02 0.49 16 42 H 0.08 0.40 8.14 -2.39 -0.02 0.38 16 43 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 44 H 0.07 0.64 8.14 -2.38 -0.02 0.62 16 45 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 46 H 0.06 0.98 7.16 -2.39 -0.02 0.97 16 47 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 48 H 0.34 11.24 8.17 -89.70 -0.73 10.50 16 49 H 0.07 2.08 7.44 -2.39 -0.02 2.06 16 50 H 0.10 3.21 8.06 -2.39 -0.02 3.19 16 51 H 0.40 19.99 7.90 -92.71 -0.73 19.26 16 52 H 0.28 14.39 8.31 -92.71 -0.77 13.62 16 Total: -1.00 -78.43 422.22 -0.52 -78.94 By element: Atomic # 1 Polarization: 46.52 SS G_CDS: -1.32 Total: 45.20 kcal Atomic # 6 Polarization: 6.38 SS G_CDS: 5.38 Total: 11.76 kcal Atomic # 7 Polarization: -117.27 SS G_CDS: -6.50 Total: -123.77 kcal Atomic # 8 Polarization: -58.27 SS G_CDS: -0.10 Total: -58.37 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.23 kcal Total: -78.43 -0.52 -78.94 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567235670.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.711 kcal (2) G-P(sol) polarization free energy of solvation -78.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds