Wall clock time and date at job start Tue Mar 31 2020 20:03:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47091 * 2 1 4 4 C 1.53001 * 109.46944 * 119.99643 * 2 1 3 5 5 C 1.53001 * 109.47204 * 185.00089 * 4 2 1 6 6 N 1.46899 * 109.47229 * 179.97438 * 5 4 2 7 7 C 1.46899 * 111.00016 * 179.97438 * 6 5 4 8 8 C 1.50702 * 109.47281 * 180.02562 * 7 6 5 9 9 O 1.21295 * 119.99777 * 0.02562 * 8 7 6 10 10 N 1.34778 * 120.00141 * 180.02562 * 8 7 6 11 11 C 1.37092 * 120.00113 * 180.02562 * 10 8 7 12 12 H 1.08001 * 119.99737 * 359.97438 * 11 10 8 13 13 C 1.38945 * 120.00343 * 179.97438 * 11 10 8 14 14 N 1.31414 * 120.00051 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 120.00253 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.46892 * 90.00181 * 15 13 11 17 17 H 1.48498 * 109.47004 * 209.99816 * 15 13 11 18 18 H 1.48495 * 109.46988 * 330.00007 * 15 13 11 19 19 N 1.46499 * 109.47341 * 239.99755 * 2 1 3 20 20 C 1.34777 * 119.99665 * 85.27876 * 19 2 1 21 21 O 1.21283 * 119.99990 * 359.71991 * 20 19 2 22 22 C 1.50698 * 119.99538 * 179.72653 * 20 19 2 23 23 C 1.52999 * 109.47004 * 179.97438 * 22 20 19 24 24 H 1.08998 * 109.64339 * 304.58299 * 23 22 20 25 25 C 1.53027 * 109.64195 * 64.99810 * 23 22 20 26 26 C 1.50066 * 110.14721 * 169.12281 * 25 23 22 27 27 C 1.29449 * 124.07961 * 342.86752 * 26 25 23 28 28 C 1.50069 * 124.06992 * 0.49107 * 27 26 25 29 29 C 1.53041 * 110.14098 * 342.83106 * 28 27 26 30 30 H 1.08999 * 109.47091 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47098 * 300.00372 * 1 2 3 32 32 H 1.09001 * 109.46823 * 60.00339 * 1 2 3 33 33 H 1.08996 * 109.47384 * 305.00224 * 4 2 1 34 34 H 1.08994 * 109.47052 * 65.00451 * 4 2 1 35 35 H 1.08996 * 109.47061 * 300.00333 * 5 4 2 36 36 H 1.09007 * 109.47011 * 60.00308 * 5 4 2 37 37 H 1.00895 * 111.00082 * 303.95793 * 6 5 4 38 38 H 1.08996 * 109.47408 * 300.00505 * 7 6 5 39 39 H 1.09006 * 109.46958 * 60.00814 * 7 6 5 40 40 H 0.96996 * 119.99833 * 359.97438 * 10 8 7 41 41 H 0.96994 * 120.00344 * 179.97438 * 14 13 11 42 42 H 0.97001 * 119.99790 * 264.99588 * 19 2 1 43 43 H 1.09003 * 109.47112 * 299.99065 * 22 20 19 44 44 H 1.08993 * 109.47916 * 59.99687 * 22 20 19 45 45 H 1.08996 * 109.35962 * 289.32891 * 25 23 22 46 46 H 1.09004 * 109.35956 * 49.05132 * 25 23 22 47 47 H 1.08004 * 117.96328 * 162.89265 * 26 25 23 48 48 H 1.07996 * 117.96437 * 180.47262 * 27 26 25 49 49 H 1.09005 * 109.35558 * 103.05604 * 28 27 26 50 50 H 1.08995 * 109.35733 * 222.63991 * 28 27 26 51 51 H 1.08996 * 109.66170 * 289.77616 * 29 28 27 52 52 H 1.09002 * 109.63269 * 169.13671 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5648 -0.6132 1.3138 6 7 4.0544 -1.3051 2.5136 7 6 5.5180 -1.2226 2.6086 8 6 5.9824 -1.9424 3.8485 9 8 5.1736 -2.4724 4.5808 10 7 7.2963 -1.9971 4.1437 11 6 7.7188 -2.6523 5.2713 12 1 6.9986 -3.1243 5.9234 13 6 9.0733 -2.7093 5.5754 14 7 9.9496 -2.1354 4.7818 15 14 9.6489 -3.6015 7.1124 16 1 9.9160 -5.0256 6.7872 17 1 10.8934 -2.9670 7.6162 18 1 8.5950 -3.5210 8.1554 19 7 2.0184 -0.6906 -1.1961 20 6 2.1524 -0.0169 -2.3557 21 8 1.8639 1.1598 -2.4102 22 6 2.6607 -0.7259 -3.5845 23 6 2.7169 0.2584 -4.7545 24 1 1.7367 0.7130 -4.8983 25 6 3.7510 1.3476 -4.4612 26 6 4.0090 2.1612 -5.6955 27 6 3.6928 1.7834 -6.8926 28 6 3.0144 0.4835 -7.2122 29 6 3.1396 -0.4808 -6.0304 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.6053 -0.2617 2.1370 34 1 1.7517 -1.7714 1.2057 35 1 3.9994 -1.0727 0.4261 36 1 3.8531 0.4371 1.3575 37 1 3.6165 -0.9395 3.3458 38 1 5.9658 -1.6870 1.7301 39 1 5.8202 -0.1766 2.6606 40 1 7.9430 -1.5736 3.5579 41 1 10.8952 -2.1748 4.9943 42 1 2.2491 -1.6318 -1.1525 43 1 3.6591 -1.1180 -3.3909 44 1 1.9895 -1.5478 -3.8336 45 1 3.3761 1.9984 -3.6714 46 1 4.6820 0.8836 -4.1356 47 1 4.4888 3.1216 -5.5778 48 1 3.9318 2.4448 -7.7121 49 1 1.9600 0.6675 -7.4187 50 1 3.4805 0.0394 -8.0917 51 1 4.1734 -0.8130 -5.9361 52 1 2.4883 -1.3405 -6.1886 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568666058.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:03:56 Heat of formation + Delta-G solvation = -87.580580 kcal Electronic energy + Delta-G solvation = -28432.928997 eV Core-core repulsion = 24431.199100 eV Total energy + Delta-G solvation = -4001.729897 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.39523 -38.68678 -38.28478 -36.87301 -34.98924 -33.83361 -33.18166 -31.72034 -31.21206 -31.01319 -29.29747 -27.52080 -26.22610 -24.15658 -23.55845 -22.53699 -21.89962 -20.93079 -20.46392 -19.23631 -18.26830 -17.89947 -17.22018 -16.59075 -16.26253 -16.07100 -15.56547 -15.47020 -14.74593 -14.55598 -14.52803 -14.24965 -14.02711 -13.85210 -13.65561 -13.58372 -13.31427 -13.05798 -12.98633 -12.64252 -12.63301 -12.42201 -12.27867 -12.15064 -11.89867 -11.65640 -11.50967 -11.27263 -11.25199 -11.04802 -11.00716 -10.93835 -10.85296 -10.42860 -10.40187 -10.22643 -9.86316 -9.51903 -9.30178 -9.15790 -8.47936 -8.07934 -7.96886 -6.42511 -3.83496 2.07126 2.46448 2.96732 3.17272 3.25906 3.31749 3.89717 4.03345 4.24510 4.31167 4.36939 4.46376 4.70468 4.80370 4.84098 4.86145 4.93584 5.01260 5.08050 5.11745 5.16784 5.23426 5.28963 5.30737 5.33964 5.37497 5.41901 5.50090 5.51211 5.56293 5.58185 5.66570 5.68734 5.79144 5.88577 5.91385 5.93533 5.98398 6.00085 6.08741 6.12284 6.25923 6.34752 6.42164 6.74014 7.19317 7.30871 7.54379 7.64121 8.05409 8.05489 8.60317 9.16936 9.53380 10.04756 10.75215 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013398 B = 0.001784 C = 0.001622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2089.324105 B =15693.141303 C =17263.588264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.143 3.857 3 H 0.087 0.913 4 C -0.126 4.126 5 C 0.060 3.940 6 N -0.670 5.670 7 C 0.051 3.949 8 C 0.440 3.560 9 O -0.584 6.584 10 N -0.564 5.564 11 C -0.300 4.300 12 H 0.103 0.897 13 C 0.022 3.978 14 N -0.902 5.902 15 Si 0.931 3.069 16 H -0.278 1.278 17 H -0.284 1.284 18 H -0.270 1.270 19 N -0.726 5.726 20 C 0.513 3.487 21 O -0.539 6.539 22 C -0.140 4.140 23 C -0.069 4.069 24 H 0.079 0.921 25 C -0.094 4.094 26 C -0.145 4.145 27 C -0.168 4.168 28 C -0.088 4.088 29 C -0.117 4.117 30 H 0.057 0.943 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.069 0.931 36 H 0.026 0.974 37 H 0.349 0.651 38 H 0.085 0.915 39 H 0.043 0.957 40 H 0.392 0.608 41 H 0.271 0.729 42 H 0.402 0.598 43 H 0.095 0.905 44 H 0.093 0.907 45 H 0.092 0.908 46 H 0.068 0.932 47 H 0.100 0.900 48 H 0.099 0.901 49 H 0.071 0.929 50 H 0.069 0.931 51 H 0.066 0.934 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.956 5.608 -22.583 27.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.038 3.962 3 H 0.105 0.895 4 C -0.164 4.164 5 C -0.070 4.070 6 N -0.302 5.302 7 C -0.082 4.082 8 C 0.226 3.774 9 O -0.468 6.468 10 N -0.200 5.200 11 C -0.429 4.429 12 H 0.121 0.879 13 C -0.180 4.180 14 N -0.543 5.543 15 Si 0.758 3.242 16 H -0.204 1.204 17 H -0.209 1.209 18 H -0.194 1.194 19 N -0.378 5.378 20 C 0.300 3.700 21 O -0.416 6.416 22 C -0.180 4.180 23 C -0.088 4.088 24 H 0.098 0.902 25 C -0.131 4.131 26 C -0.163 4.163 27 C -0.187 4.187 28 C -0.125 4.125 29 C -0.154 4.154 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.088 0.912 36 H 0.044 0.956 37 H 0.168 0.832 38 H 0.103 0.897 39 H 0.061 0.939 40 H 0.225 0.775 41 H 0.081 0.919 42 H 0.236 0.764 43 H 0.113 0.887 44 H 0.112 0.888 45 H 0.110 0.890 46 H 0.087 0.913 47 H 0.118 0.882 48 H 0.117 0.883 49 H 0.089 0.911 50 H 0.088 0.912 51 H 0.085 0.915 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -15.482 5.504 -22.385 27.768 hybrid contribution 1.171 0.361 0.617 1.372 sum -14.310 5.865 -21.768 26.702 Atomic orbital electron populations 1.22149 0.95180 1.02173 1.02463 1.20953 0.93948 0.97512 0.83790 0.89482 1.21876 0.95624 1.01977 0.96906 1.21953 0.94515 0.96123 0.94398 1.60080 1.04946 1.59926 1.05261 1.21662 0.88914 0.98745 0.98861 1.19816 0.83411 0.86140 0.88044 1.90520 1.53397 1.50511 1.52360 1.41867 1.05441 1.48892 1.23838 1.19707 0.91994 1.30236 1.00987 0.87908 1.25270 0.95626 0.97809 0.99278 1.69613 1.02522 1.44243 1.37938 0.85848 0.78111 0.79123 0.81152 1.20384 1.20937 1.19425 1.46201 1.67519 1.14184 1.09872 1.20708 0.77287 0.87409 0.84587 1.90670 1.49980 1.16030 1.84920 1.21798 1.03295 0.99622 0.93238 1.20943 1.00360 0.94852 0.92668 0.90217 1.20663 0.98366 0.97217 0.96830 1.22114 1.00031 0.99623 0.94502 1.22001 1.01457 0.98110 0.97085 1.20410 1.00350 0.93642 0.98143 1.21689 1.01821 0.97725 0.94208 0.92386 0.91581 0.92232 0.90282 0.90231 0.91211 0.95596 0.83192 0.89712 0.93934 0.77461 0.91864 0.76399 0.88695 0.88822 0.89008 0.91321 0.88199 0.88311 0.91087 0.91221 0.91548 0.91597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.32 9.49 37.16 0.35 -0.97 16 2 C 0.14 1.26 2.58 -67.93 -0.17 1.09 16 3 H 0.09 0.93 7.57 -51.93 -0.39 0.53 16 4 C -0.13 -1.17 5.01 -26.73 -0.13 -1.30 16 5 C 0.06 0.70 5.57 -3.82 -0.02 0.67 16 6 N -0.67 -10.49 6.12 -115.05 -0.70 -11.20 16 7 C 0.05 0.89 6.17 -4.98 -0.03 0.86 16 8 C 0.44 10.40 7.82 -10.98 -0.09 10.32 16 9 O -0.58 -15.83 15.78 5.54 0.09 -15.75 16 10 N -0.56 -14.32 5.29 -10.96 -0.06 -14.38 16 11 C -0.30 -8.38 9.68 -14.94 -0.14 -8.52 16 12 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 13 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 14 N -0.90 -24.55 13.05 55.50 0.72 -23.82 16 15 Si 0.93 21.03 29.55 -169.99 -5.02 16.01 16 16 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 17 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 18 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 19 N -0.73 -5.76 4.53 -53.81 -0.24 -6.00 16 20 C 0.51 4.75 7.55 -10.99 -0.08 4.67 16 21 O -0.54 -6.87 13.69 5.55 0.08 -6.79 16 22 C -0.14 -0.92 5.18 -27.88 -0.14 -1.06 16 23 C -0.07 -0.54 1.88 -90.40 -0.17 -0.71 16 24 H 0.08 0.74 7.96 -51.93 -0.41 0.32 16 25 C -0.09 -0.85 5.03 -28.18 -0.14 -0.99 16 26 C -0.14 -1.26 9.80 -35.90 -0.35 -1.61 16 27 C -0.17 -1.32 9.80 -35.90 -0.35 -1.67 16 28 C -0.09 -0.58 6.12 -28.17 -0.17 -0.75 16 29 C -0.12 -0.74 5.31 -26.51 -0.14 -0.88 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.07 0.78 7.75 -51.93 -0.40 0.38 16 36 H 0.03 0.31 8.14 -51.92 -0.42 -0.12 16 37 H 0.35 5.66 8.43 -39.29 -0.33 5.33 16 38 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 39 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.39 9.52 7.90 -40.82 -0.32 9.20 16 41 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 42 H 0.40 2.47 8.60 -40.82 -0.35 2.12 16 43 H 0.09 0.53 8.11 -51.93 -0.42 0.11 16 44 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.09 1.02 6.22 -51.93 -0.32 0.70 16 46 H 0.07 0.59 8.08 -51.93 -0.42 0.18 16 47 H 0.10 0.82 8.06 -52.48 -0.42 0.39 16 48 H 0.10 0.68 8.06 -52.49 -0.42 0.25 16 49 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 50 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 51 H 0.07 0.43 8.12 -51.93 -0.42 0.00 16 52 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 LS Contribution 419.87 15.07 6.33 6.33 Total: -1.00 -32.73 419.87 -9.94 -42.66 By element: Atomic # 1 Polarization: 22.55 SS G_CDS: -9.23 Total: 13.32 kcal Atomic # 6 Polarization: 1.52 SS G_CDS: -1.89 Total: -0.37 kcal Atomic # 7 Polarization: -55.12 SS G_CDS: -0.28 Total: -55.41 kcal Atomic # 8 Polarization: -22.70 SS G_CDS: 0.16 Total: -22.54 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 6.33 Total: 6.33 kcal Total: -32.73 -9.94 -42.66 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568666058.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.920 kcal (2) G-P(sol) polarization free energy of solvation -32.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds