Wall clock time and date at job start Tue Mar 31 2020 20:04:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.46796 * 2 1 4 4 C 1.53001 * 109.46508 * 119.99286 * 2 1 3 5 5 C 1.53006 * 109.46654 * 184.99930 * 4 2 1 6 6 N 1.46903 * 109.47092 * 179.97438 * 5 4 2 7 7 C 1.46898 * 111.00201 * 179.97438 * 6 5 4 8 8 C 1.50696 * 109.47125 * 180.02562 * 7 6 5 9 9 O 1.21287 * 119.99983 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99660 * 180.02562 * 8 7 6 11 11 C 1.37105 * 119.99884 * 179.97438 * 10 8 7 12 12 H 1.08003 * 119.99576 * 0.02562 * 11 10 8 13 13 C 1.38944 * 120.00154 * 179.97438 * 11 10 8 14 14 N 1.31418 * 119.99905 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00177 * 180.02562 * 13 11 10 16 16 H 1.48492 * 109.47111 * 89.99970 * 15 13 11 17 17 H 1.48500 * 109.46862 * 210.00406 * 15 13 11 18 18 H 1.48503 * 109.47049 * 330.00041 * 15 13 11 19 19 N 1.46497 * 109.47335 * 239.99136 * 2 1 3 20 20 C 1.34777 * 119.99525 * 84.99977 * 19 2 1 21 21 O 1.21283 * 120.00463 * 0.02562 * 20 19 2 22 22 C 1.50700 * 119.99675 * 179.72583 * 20 19 2 23 23 C 1.53004 * 109.47208 * 180.27843 * 22 20 19 24 24 H 1.09004 * 109.63885 * 55.41816 * 23 22 20 25 25 C 1.53020 * 109.63987 * 295.00151 * 23 22 20 26 26 C 1.50069 * 110.14632 * 190.87645 * 25 23 22 27 27 C 1.29444 * 124.07346 * 17.13450 * 26 25 23 28 28 C 1.50072 * 124.07749 * 359.50143 * 27 26 25 29 29 C 1.53035 * 110.13649 * 17.17292 * 28 27 26 30 30 H 1.08995 * 109.47273 * 300.00977 * 1 2 3 31 31 H 1.08998 * 109.46811 * 60.00625 * 1 2 3 32 32 H 1.08994 * 109.47201 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47404 * 304.99977 * 4 2 1 34 34 H 1.09001 * 109.47466 * 65.00446 * 4 2 1 35 35 H 1.09000 * 109.47254 * 300.00139 * 5 4 2 36 36 H 1.09001 * 109.46763 * 60.00085 * 5 4 2 37 37 H 1.00904 * 110.99825 * 303.96096 * 6 5 4 38 38 H 1.08997 * 109.47108 * 300.00338 * 7 6 5 39 39 H 1.09007 * 109.46810 * 60.00256 * 7 6 5 40 40 H 0.96998 * 120.00421 * 0.02562 * 10 8 7 41 41 H 0.97003 * 119.99938 * 179.97438 * 14 13 11 42 42 H 0.97000 * 120.00580 * 265.00723 * 19 2 1 43 43 H 1.09009 * 109.47352 * 300.27556 * 22 20 19 44 44 H 1.08998 * 109.47585 * 60.27844 * 22 20 19 45 45 H 1.09001 * 109.36047 * 311.08411 * 25 23 22 46 46 H 1.08997 * 109.36286 * 70.66782 * 25 23 22 47 47 H 1.07996 * 117.96414 * 197.10619 * 26 25 23 48 48 H 1.08002 * 117.96180 * 179.52843 * 27 26 25 49 49 H 1.08994 * 109.35601 * 137.36465 * 28 27 26 50 50 H 1.08994 * 109.35674 * 257.08588 * 28 27 26 51 51 H 1.09001 * 109.63350 * 190.85782 * 29 28 27 52 52 H 1.08999 * 109.66027 * 70.22513 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 3.5648 -0.6132 1.3138 6 7 4.0544 -1.3050 2.5137 7 6 5.5180 -1.2225 2.6087 8 6 5.9823 -1.9422 3.8486 9 8 5.1736 -2.4721 4.5809 10 7 7.2962 -1.9969 4.1438 11 6 7.7186 -2.6512 5.2722 12 1 6.9984 -3.1231 5.9242 13 6 9.0732 -2.7082 5.5762 14 7 9.9494 -2.1344 4.7825 15 14 9.6487 -3.6003 7.1132 16 1 9.9157 -5.0244 6.7882 17 1 10.8932 -2.9657 7.6170 18 1 8.5948 -3.5197 8.1563 19 7 2.0185 -0.6908 -1.1960 20 6 2.1472 -0.0185 -2.3570 21 8 1.8591 1.1584 -2.4116 22 6 2.6554 -0.7275 -3.5859 23 6 2.7122 0.2568 -4.7558 24 1 3.3179 1.1199 -4.4794 25 6 1.2962 0.7149 -5.1118 26 6 1.3070 1.4648 -6.4117 27 6 2.2767 1.4180 -7.2679 28 6 3.5304 0.6159 -7.0755 29 6 3.3212 -0.4344 -5.9822 30 1 -0.3633 0.5140 0.8898 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.6053 -0.2615 2.1370 34 1 1.7516 -1.7714 1.2059 35 1 3.9995 -1.0728 0.4262 36 1 3.8531 0.4371 1.3574 37 1 3.6164 -0.9393 3.3460 38 1 5.9658 -1.6870 1.7302 39 1 5.8203 -0.1765 2.6606 40 1 7.9429 -1.5728 3.5584 41 1 10.8951 -2.1738 4.9950 42 1 2.2491 -1.6319 -1.1524 43 1 3.6539 -1.1197 -3.3923 44 1 1.9842 -1.5494 -3.8349 45 1 0.6468 -0.1558 -5.2024 46 1 0.9176 1.3648 -4.3229 47 1 0.4524 2.0814 -6.6477 48 1 2.1775 1.9923 -8.1771 49 1 3.7876 0.1179 -8.0102 50 1 4.3436 1.2807 -6.7846 51 1 4.2793 -0.8795 -5.7139 52 1 2.6424 -1.2078 -6.3417 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568666060.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:04:02 Heat of formation + Delta-G solvation = -109.801478 kcal Electronic energy + Delta-G solvation = -28344.372191 eV Core-core repulsion = 24341.678724 eV Total energy + Delta-G solvation = -4002.693467 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.10577 -40.16402 -39.27331 -37.83185 -36.26148 -35.67517 -33.82330 -33.28193 -32.48105 -31.58421 -30.33984 -28.11806 -27.77517 -25.78923 -24.18463 -23.43447 -22.68013 -21.67480 -21.17594 -21.00412 -19.90721 -18.86860 -17.98989 -17.78007 -17.33667 -17.02669 -16.74411 -16.45516 -16.12229 -15.96095 -15.50701 -15.35484 -15.10403 -15.00426 -14.75949 -14.43495 -14.24855 -13.91285 -13.82020 -13.67429 -13.49414 -13.43803 -13.22630 -13.16975 -12.96913 -12.85945 -12.74903 -12.42716 -12.42007 -12.19571 -12.11424 -12.08048 -11.75778 -11.61906 -11.50737 -11.47575 -10.99713 -10.58146 -10.35898 -10.02119 -10.00957 -9.81251 -9.35129 -8.46887 -5.95936 1.38513 1.42408 1.43632 1.55190 1.76443 2.04508 2.29211 2.31437 2.88800 3.20296 3.48875 3.72990 3.78994 3.87929 3.97114 4.04962 4.11769 4.17805 4.29958 4.32930 4.43071 4.45298 4.50903 4.51540 4.53394 4.60789 4.63485 4.68931 4.75533 4.80938 4.83698 4.87738 4.91651 4.97123 5.05969 5.09120 5.14092 5.22337 5.26135 5.33472 5.39875 5.40824 5.52979 5.64966 5.81068 5.88174 6.09350 6.10906 6.39063 6.59449 6.67251 7.12073 7.38719 7.55574 8.10575 8.70458 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.015953 B = 0.001680 C = 0.001546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.773655 B =16663.723194 C =18106.848059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.149 3.851 3 H 0.067 0.933 4 C -0.114 4.114 5 C 0.063 3.937 6 N -0.680 5.680 7 C 0.065 3.935 8 C 0.437 3.563 9 O -0.622 6.622 10 N -0.573 5.573 11 C -0.335 4.335 12 H 0.080 0.920 13 C -0.013 4.013 14 N -0.920 5.920 15 Si 0.994 3.006 16 H -0.270 1.270 17 H -0.271 1.271 18 H -0.273 1.273 19 N -0.717 5.717 20 C 0.509 3.491 21 O -0.579 6.579 22 C -0.133 4.133 23 C -0.069 4.069 24 H 0.056 0.944 25 C -0.089 4.089 26 C -0.166 4.166 27 C -0.165 4.165 28 C -0.094 4.094 29 C -0.112 4.112 30 H 0.072 0.928 31 H 0.044 0.956 32 H 0.068 0.932 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.079 0.921 36 H 0.026 0.974 37 H 0.344 0.656 38 H 0.104 0.896 39 H 0.061 0.939 40 H 0.396 0.604 41 H 0.278 0.722 42 H 0.413 0.587 43 H 0.114 0.886 44 H 0.116 0.884 45 H 0.074 0.926 46 H 0.065 0.935 47 H 0.100 0.900 48 H 0.107 0.893 49 H 0.084 0.916 50 H 0.071 0.929 51 H 0.079 0.921 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.408 4.337 -23.772 28.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.043 3.957 3 H 0.086 0.914 4 C -0.152 4.152 5 C -0.066 4.066 6 N -0.312 5.312 7 C -0.068 4.068 8 C 0.225 3.775 9 O -0.509 6.509 10 N -0.210 5.210 11 C -0.465 4.465 12 H 0.098 0.902 13 C -0.213 4.213 14 N -0.561 5.561 15 Si 0.818 3.182 16 H -0.196 1.196 17 H -0.196 1.196 18 H -0.197 1.197 19 N -0.370 5.370 20 C 0.297 3.703 21 O -0.459 6.459 22 C -0.173 4.173 23 C -0.088 4.088 24 H 0.074 0.926 25 C -0.125 4.125 26 C -0.184 4.184 27 C -0.183 4.183 28 C -0.131 4.131 29 C -0.150 4.150 30 H 0.091 0.909 31 H 0.064 0.936 32 H 0.087 0.913 33 H 0.100 0.900 34 H 0.103 0.897 35 H 0.097 0.903 36 H 0.044 0.956 37 H 0.162 0.838 38 H 0.122 0.878 39 H 0.079 0.921 40 H 0.230 0.770 41 H 0.087 0.913 42 H 0.250 0.750 43 H 0.132 0.868 44 H 0.134 0.866 45 H 0.092 0.908 46 H 0.083 0.917 47 H 0.118 0.882 48 H 0.125 0.875 49 H 0.103 0.897 50 H 0.089 0.911 51 H 0.098 0.902 52 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -15.930 4.221 -23.603 28.787 hybrid contribution 0.877 0.705 0.837 1.403 sum -15.052 4.926 -22.766 27.733 Atomic orbital electron populations 1.22088 0.94468 1.02732 1.02096 1.20806 0.94395 0.96505 0.83950 0.91446 1.21768 0.93937 1.02315 0.97189 1.22022 0.95916 0.95768 0.92876 1.60108 1.03678 1.61054 1.06377 1.21527 0.90309 0.98917 0.96044 1.20867 0.82420 0.85078 0.89138 1.90486 1.54210 1.52025 1.54175 1.41944 1.06351 1.49215 1.23539 1.19687 0.92401 1.32132 1.02258 0.90237 1.26056 0.95163 0.98055 1.02021 1.69677 1.02934 1.44454 1.39069 0.84911 0.77699 0.78231 0.77393 1.19582 1.19588 1.19744 1.46143 1.66956 1.14716 1.09185 1.21216 0.76612 0.87012 0.85442 1.90665 1.51815 1.17936 1.85496 1.21821 1.04659 0.99565 0.91229 1.20897 0.96567 0.97357 0.93964 0.92574 1.20560 0.97159 0.99713 0.95106 1.22188 0.99364 1.00637 0.96214 1.22243 0.96167 1.00564 0.99330 1.20503 0.95616 0.97215 0.99766 1.21672 1.01609 0.97668 0.94018 0.90934 0.93647 0.91296 0.89981 0.89729 0.90284 0.95556 0.83754 0.87762 0.92075 0.76996 0.91288 0.75027 0.86813 0.86620 0.90754 0.91664 0.88225 0.87480 0.89742 0.91107 0.90204 0.90894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.38 9.48 71.98 0.68 -1.69 16 2 C 0.15 2.48 2.57 45.00 0.12 2.59 16 3 H 0.07 1.43 7.58 -2.39 -0.02 1.41 16 4 C -0.11 -1.93 5.01 30.60 0.15 -1.78 16 5 C 0.06 1.35 5.57 86.30 0.48 1.83 16 6 N -0.68 -20.36 6.12 -517.92 -3.17 -23.53 16 7 C 0.06 2.18 6.17 85.56 0.53 2.70 16 8 C 0.44 20.68 7.82 87.66 0.69 21.37 16 9 O -0.62 -34.24 15.78 -3.05 -0.05 -34.29 16 10 N -0.57 -29.36 5.29 -306.99 -1.62 -30.98 16 11 C -0.34 -19.02 9.68 84.04 0.81 -18.21 16 12 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 13 C -0.01 -0.70 5.50 84.92 0.47 -0.24 16 14 N -0.92 -49.52 13.05 21.66 0.28 -49.24 16 15 Si 0.99 42.70 29.55 68.60 2.03 44.72 16 16 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 17 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 18 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 19 N -0.72 -10.30 4.53 -442.52 -2.00 -12.31 16 20 C 0.51 9.01 7.55 87.66 0.66 9.67 16 21 O -0.58 -15.10 13.69 -3.04 -0.04 -15.15 16 22 C -0.13 -1.51 5.18 29.85 0.15 -1.35 16 23 C -0.07 -1.01 1.88 -10.66 -0.02 -1.03 16 24 H 0.06 1.10 7.96 -2.39 -0.02 1.08 16 25 C -0.09 -1.49 5.03 29.66 0.15 -1.34 16 26 C -0.17 -2.71 9.80 27.04 0.27 -2.45 16 27 C -0.17 -2.37 9.80 27.04 0.27 -2.10 16 28 C -0.09 -1.11 6.12 29.66 0.18 -0.93 16 29 C -0.11 -1.21 5.31 30.74 0.16 -1.05 16 30 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.08 1.56 7.75 -2.39 -0.02 1.54 16 36 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16 37 H 0.34 10.89 8.43 -89.69 -0.76 10.13 16 38 H 0.10 3.14 8.14 -2.39 -0.02 3.12 16 39 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16 40 H 0.40 19.27 7.90 -92.71 -0.73 18.53 16 41 H 0.28 13.97 8.31 -92.71 -0.77 13.20 16 42 H 0.41 4.06 8.60 -92.71 -0.80 3.27 16 43 H 0.11 0.91 8.14 -2.38 -0.02 0.89 16 44 H 0.12 0.81 8.11 -2.39 -0.02 0.79 16 45 H 0.07 1.08 8.08 -2.39 -0.02 1.06 16 46 H 0.06 1.45 6.22 -2.39 -0.01 1.43 16 47 H 0.10 1.53 8.06 -2.91 -0.02 1.51 16 48 H 0.11 1.31 8.06 -2.91 -0.02 1.28 16 49 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 50 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 51 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 52 H 0.07 0.69 8.12 -2.39 -0.02 0.67 16 Total: -1.00 -71.68 419.87 -0.20 -71.88 By element: Atomic # 1 Polarization: 44.25 SS G_CDS: -1.37 Total: 42.88 kcal Atomic # 6 Polarization: 0.26 SS G_CDS: 5.75 Total: 6.01 kcal Atomic # 7 Polarization: -109.55 SS G_CDS: -6.52 Total: -116.06 kcal Atomic # 8 Polarization: -49.34 SS G_CDS: -0.09 Total: -49.43 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.72 kcal Total: -71.68 -0.20 -71.88 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568666060.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.922 kcal (2) G-P(sol) polarization free energy of solvation -71.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds