Wall clock time and date at job start Tue Mar 31 2020 20:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.46773 * 2 1 4 4 C 1.53008 * 109.46811 * 120.00031 * 2 1 3 5 5 C 1.52995 * 109.46639 * 185.00224 * 4 2 1 6 6 N 1.46902 * 109.47116 * 180.02562 * 5 4 2 7 7 C 1.46897 * 111.00061 * 179.97438 * 6 5 4 8 8 C 1.50705 * 109.46950 * 179.97438 * 7 6 5 9 9 O 1.21295 * 120.00318 * 0.02562 * 8 7 6 10 10 N 1.34781 * 120.00019 * 179.97438 * 8 7 6 11 11 C 1.37091 * 119.99848 * 180.02562 * 10 8 7 12 12 H 1.08006 * 120.00658 * 0.02562 * 11 10 8 13 13 C 1.38952 * 120.00048 * 180.02562 * 11 10 8 14 14 N 1.31416 * 119.99557 * 359.97438 * 13 11 10 15 15 Si 1.86794 * 120.00395 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46917 * 89.99920 * 15 13 11 17 17 H 1.48495 * 109.47675 * 209.99935 * 15 13 11 18 18 H 1.48503 * 109.47250 * 330.00561 * 15 13 11 19 19 N 1.46496 * 109.46964 * 239.99518 * 2 1 3 20 20 C 1.34785 * 119.99492 * 85.00486 * 19 2 1 21 21 O 1.21280 * 119.99781 * 359.97438 * 20 19 2 22 22 C 1.50701 * 119.99902 * 179.97438 * 20 19 2 23 23 C 1.51846 * 108.65006 * 179.97438 * 22 20 19 24 24 C 1.53027 * 110.71427 * 187.57942 * 23 22 20 25 25 C 1.51373 * 108.61775 * 274.28060 * 24 23 22 26 26 C 1.29525 * 120.35570 * 71.90218 * 25 24 23 27 27 C 1.51374 * 120.36315 * 359.97438 * 26 25 24 28 28 C 1.51772 * 108.58584 * 304.10325 * 22 20 19 29 29 H 1.09003 * 109.47007 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47092 * 299.99857 * 1 2 3 31 31 H 1.09003 * 109.47253 * 60.00380 * 1 2 3 32 32 H 1.08992 * 109.46976 * 304.99932 * 4 2 1 33 33 H 1.08996 * 109.47152 * 65.00275 * 4 2 1 34 34 H 1.09006 * 109.47357 * 299.99517 * 5 4 2 35 35 H 1.09005 * 109.47615 * 59.99672 * 5 4 2 36 36 H 1.00903 * 110.99464 * 303.95385 * 6 5 4 37 37 H 1.08994 * 109.47459 * 299.99380 * 7 6 5 38 38 H 1.08995 * 109.47425 * 60.00002 * 7 6 5 39 39 H 0.96999 * 119.99904 * 0.02562 * 10 8 7 40 40 H 0.97005 * 119.99757 * 180.02562 * 14 13 11 41 41 H 0.96994 * 120.00731 * 264.99929 * 19 2 1 42 42 H 1.09001 * 108.48999 * 62.03960 * 22 20 19 43 43 H 1.09002 * 109.22356 * 67.27066 * 23 22 20 44 44 H 1.09006 * 109.22051 * 307.88073 * 23 22 20 45 45 H 1.08993 * 109.61615 * 34.02363 * 24 23 22 46 46 H 1.09003 * 109.61285 * 154.54670 * 24 23 22 47 47 H 1.07997 * 119.82383 * 251.87817 * 25 24 23 48 48 H 1.08006 * 119.81765 * 179.97438 * 26 25 24 49 49 H 1.09003 * 109.60851 * 47.84376 * 27 26 25 50 50 H 1.09001 * 109.61406 * 168.36034 * 27 26 25 51 51 H 1.09007 * 109.23680 * 52.06056 * 28 22 20 52 52 H 1.09001 * 109.20224 * 292.67854 * 28 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5648 -0.6133 1.3138 6 7 4.0545 -1.3063 2.5129 7 6 5.5181 -1.2237 2.6078 8 6 5.9825 -1.9436 3.8476 9 8 5.1738 -2.4737 4.5799 10 7 7.2965 -1.9993 4.1423 11 6 7.7190 -2.6546 5.2699 12 1 6.9989 -3.1266 5.9220 13 6 9.0736 -2.7115 5.5740 14 7 9.9498 -2.1376 4.7803 15 14 9.6493 -3.6038 7.1108 16 1 9.9163 -5.0279 6.7855 17 1 10.8937 -2.9694 7.6147 18 1 8.5953 -3.5236 8.1538 19 7 2.0183 -0.6907 -1.1961 20 6 2.1471 -0.0183 -2.3571 21 8 1.8583 1.1584 -2.4116 22 6 2.6499 -0.7286 -3.5875 23 6 2.6929 0.2627 -4.7369 24 6 3.0170 -0.4481 -6.0528 25 6 4.5210 -0.5581 -6.1849 26 6 5.1853 -1.3810 -5.4371 27 6 4.4664 -2.2427 -4.4213 28 6 3.9964 -1.3526 -3.2694 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.6054 -0.2618 2.1369 33 1 1.7517 -1.7715 1.2056 34 1 3.9995 -1.0728 0.4260 35 1 3.8532 0.4370 1.3574 36 1 3.6167 -0.9414 3.3455 37 1 5.9660 -1.6874 1.7289 38 1 5.8204 -0.1779 2.6606 39 1 7.9433 -1.5756 3.5565 40 1 10.8955 -2.1776 4.9924 41 1 2.2490 -1.6318 -1.1526 42 1 1.9477 -1.5234 -3.8390 43 1 3.4583 1.0123 -4.5360 44 1 1.7236 0.7538 -4.8237 45 1 2.5763 -1.4449 -6.0484 46 1 2.6176 0.1277 -6.8877 47 1 5.0428 0.0525 -6.9068 48 1 6.2582 -1.4527 -5.5390 49 1 3.6050 -2.7189 -4.8897 50 1 5.1467 -3.0045 -4.0408 51 1 3.9089 -1.9532 -2.3639 52 1 4.7284 -0.5618 -3.1060 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568711069.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:03:28 Heat of formation + Delta-G solvation = -82.923140 kcal Electronic energy + Delta-G solvation = -28992.491981 eV Core-core repulsion = 24990.964046 eV Total energy + Delta-G solvation = -4001.527935 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.63131 -38.51741 -38.23075 -36.86172 -35.00412 -33.84103 -33.30343 -32.21900 -31.39001 -31.15514 -29.25096 -26.39830 -26.13927 -24.32099 -24.11270 -22.60744 -21.93474 -20.92319 -20.19268 -19.23773 -18.34569 -17.91105 -17.54601 -16.75796 -16.42058 -16.11264 -15.55268 -15.22448 -14.88918 -14.60074 -14.42639 -14.26938 -13.98048 -13.83293 -13.71790 -13.64493 -13.33437 -13.20350 -13.11891 -12.66084 -12.48701 -12.27556 -12.26068 -12.01397 -11.66779 -11.60068 -11.51072 -11.27768 -11.24774 -11.11525 -11.04968 -10.95595 -10.91600 -10.65610 -10.40175 -10.22539 -9.92774 -9.51811 -9.36102 -9.24139 -8.47876 -8.07856 -7.96817 -6.42485 -3.83382 1.99545 2.44923 2.95324 3.17256 3.25913 3.31737 3.89769 4.03335 4.23030 4.24349 4.36052 4.43618 4.67867 4.77661 4.79487 4.82883 4.84291 4.94954 5.03961 5.09378 5.11964 5.19347 5.23510 5.28865 5.30836 5.35681 5.44285 5.46957 5.51167 5.56663 5.65232 5.67016 5.75907 5.79765 5.81167 5.87976 5.91730 5.93878 5.98583 6.03583 6.08111 6.25976 6.33938 6.36247 6.60739 7.19397 7.29794 7.54422 7.64178 8.03614 8.05448 8.60390 9.17002 9.53453 10.04834 10.75257 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.012258 B = 0.002074 C = 0.001822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2283.766455 B =13497.786588 C =15364.168311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.142 3.858 3 H 0.087 0.913 4 C -0.125 4.125 5 C 0.060 3.940 6 N -0.669 5.669 7 C 0.051 3.949 8 C 0.441 3.559 9 O -0.584 6.584 10 N -0.564 5.564 11 C -0.299 4.299 12 H 0.103 0.897 13 C 0.022 3.978 14 N -0.902 5.902 15 Si 0.930 3.070 16 H -0.278 1.278 17 H -0.284 1.284 18 H -0.270 1.270 19 N -0.724 5.724 20 C 0.515 3.485 21 O -0.542 6.542 22 C -0.102 4.102 23 C -0.095 4.095 24 C -0.092 4.092 25 C -0.159 4.159 26 C -0.158 4.158 27 C -0.091 4.091 28 C -0.108 4.108 29 H 0.057 0.943 30 H 0.066 0.934 31 H 0.058 0.942 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.069 0.931 35 H 0.026 0.974 36 H 0.349 0.651 37 H 0.085 0.915 38 H 0.043 0.957 39 H 0.392 0.608 40 H 0.271 0.729 41 H 0.401 0.599 42 H 0.093 0.907 43 H 0.070 0.930 44 H 0.073 0.927 45 H 0.071 0.929 46 H 0.069 0.931 47 H 0.106 0.894 48 H 0.108 0.892 49 H 0.073 0.927 50 H 0.073 0.927 51 H 0.071 0.929 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.291 3.534 -21.754 26.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.037 3.963 3 H 0.105 0.895 4 C -0.164 4.164 5 C -0.070 4.070 6 N -0.302 5.302 7 C -0.082 4.082 8 C 0.226 3.774 9 O -0.468 6.468 10 N -0.200 5.200 11 C -0.429 4.429 12 H 0.121 0.879 13 C -0.180 4.180 14 N -0.543 5.543 15 Si 0.757 3.243 16 H -0.204 1.204 17 H -0.209 1.209 18 H -0.194 1.194 19 N -0.376 5.376 20 C 0.301 3.699 21 O -0.418 6.418 22 C -0.124 4.124 23 C -0.133 4.133 24 C -0.129 4.129 25 C -0.177 4.177 26 C -0.176 4.176 27 C -0.128 4.128 28 C -0.146 4.146 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.088 0.912 35 H 0.044 0.956 36 H 0.168 0.832 37 H 0.103 0.897 38 H 0.061 0.939 39 H 0.225 0.775 40 H 0.081 0.919 41 H 0.236 0.764 42 H 0.111 0.889 43 H 0.089 0.911 44 H 0.092 0.908 45 H 0.090 0.910 46 H 0.088 0.912 47 H 0.124 0.876 48 H 0.126 0.874 49 H 0.091 0.909 50 H 0.092 0.908 51 H 0.090 0.910 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -14.828 3.432 -21.538 26.373 hybrid contribution 1.203 0.324 0.635 1.399 sum -13.624 3.756 -20.903 25.233 Atomic orbital electron populations 1.22153 0.95152 1.02193 1.02478 1.20968 0.93971 0.97529 0.83787 0.89489 1.21875 0.95639 1.01969 0.96883 1.21957 0.94505 0.96138 0.94414 1.60091 1.04941 1.59875 1.05272 1.21660 0.88918 0.98748 0.98854 1.19817 0.83408 0.86135 0.88043 1.90520 1.53407 1.50508 1.52358 1.41869 1.05434 1.48885 1.23855 1.19705 0.91985 1.30209 1.00981 0.87914 1.25272 0.95633 0.97815 0.99276 1.69619 1.02517 1.44243 1.37949 0.85851 0.78114 0.79130 0.81158 1.20375 1.20938 1.19424 1.46195 1.67449 1.14213 1.09736 1.20782 0.77079 0.87322 0.84697 1.90691 1.50065 1.16076 1.85005 1.21032 0.98631 0.99122 0.93582 1.21094 1.03153 0.97104 0.91917 1.20837 0.93505 1.01018 0.97546 1.22567 0.96054 0.99290 0.99767 1.22573 0.99583 0.98101 0.97345 1.20800 1.00050 0.97125 0.94829 1.21287 0.95392 0.99524 0.98367 0.92357 0.91538 0.92247 0.90247 0.90220 0.91211 0.95581 0.83200 0.89703 0.93947 0.77459 0.91867 0.76379 0.88893 0.91111 0.90801 0.91023 0.91236 0.87576 0.87441 0.90868 0.90823 0.90993 0.90968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.35 9.48 37.16 0.35 -0.99 16 2 C 0.14 1.30 2.57 -67.93 -0.17 1.12 16 3 H 0.09 0.95 7.58 -51.93 -0.39 0.56 16 4 C -0.13 -1.18 5.01 -26.73 -0.13 -1.32 16 5 C 0.06 0.70 5.57 -3.83 -0.02 0.68 16 6 N -0.67 -10.51 6.13 -115.06 -0.70 -11.22 16 7 C 0.05 0.90 6.17 -4.98 -0.03 0.87 16 8 C 0.44 10.41 7.82 -10.98 -0.09 10.32 16 9 O -0.58 -15.84 15.78 5.54 0.09 -15.75 16 10 N -0.56 -14.33 5.29 -10.96 -0.06 -14.39 16 11 C -0.30 -8.36 9.68 -14.94 -0.14 -8.51 16 12 H 0.10 3.01 7.16 -52.48 -0.38 2.63 16 13 C 0.02 0.58 5.50 -17.46 -0.10 0.48 16 14 N -0.90 -24.57 13.05 55.50 0.72 -23.84 16 15 Si 0.93 21.04 29.55 -169.99 -5.02 16.02 16 16 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 17 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 18 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 19 N -0.72 -6.04 4.33 -53.80 -0.23 -6.27 16 20 C 0.51 5.12 7.10 -10.98 -0.08 5.04 16 21 O -0.54 -7.44 15.42 5.56 0.09 -7.36 16 22 C -0.10 -0.76 2.05 -92.98 -0.19 -0.95 16 23 C -0.09 -0.76 4.31 -27.30 -0.12 -0.88 16 24 C -0.09 -0.59 5.61 -27.54 -0.15 -0.75 16 25 C -0.16 -1.11 9.34 -35.28 -0.33 -1.44 16 26 C -0.16 -1.12 9.34 -35.28 -0.33 -1.45 16 27 C -0.09 -0.58 5.61 -27.57 -0.15 -0.74 16 28 C -0.11 -0.76 4.86 -27.37 -0.13 -0.89 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.07 0.78 7.75 -51.93 -0.40 0.38 16 35 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.35 5.67 8.43 -39.29 -0.33 5.34 16 37 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 38 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.39 9.53 7.90 -40.82 -0.32 9.21 16 40 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 41 H 0.40 2.65 7.61 -40.82 -0.31 2.34 16 42 H 0.09 0.55 7.89 -51.93 -0.41 0.14 16 43 H 0.07 0.68 7.86 -51.93 -0.41 0.27 16 44 H 0.07 0.65 7.77 -51.93 -0.40 0.25 16 45 H 0.07 0.41 6.68 -51.93 -0.35 0.07 16 46 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.11 0.68 8.06 -52.49 -0.42 0.25 16 48 H 0.11 0.72 8.06 -52.48 -0.42 0.30 16 49 H 0.07 0.41 6.68 -51.93 -0.35 0.07 16 50 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 51 H 0.07 0.45 6.98 -51.92 -0.36 0.09 16 52 H 0.07 0.61 7.85 -51.93 -0.41 0.21 16 LS Contribution 414.90 15.07 6.25 6.25 Total: -1.00 -32.84 414.90 -9.72 -42.56 By element: Atomic # 1 Polarization: 22.43 SS G_CDS: -9.03 Total: 13.40 kcal Atomic # 6 Polarization: 2.43 SS G_CDS: -1.82 Total: 0.60 kcal Atomic # 7 Polarization: -55.45 SS G_CDS: -0.27 Total: -55.72 kcal Atomic # 8 Polarization: -23.28 SS G_CDS: 0.17 Total: -23.11 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -32.84 -9.72 -42.56 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568711069.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.365 kcal (2) G-P(sol) polarization free energy of solvation -32.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds