Wall clock time and date at job start Tue Mar 31 2020 20:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.46773 * 2 1 4 4 C 1.53008 * 109.46811 * 120.00031 * 2 1 3 5 5 C 1.52995 * 109.46639 * 185.00224 * 4 2 1 6 6 N 1.46902 * 109.47116 * 180.02562 * 5 4 2 7 7 C 1.46897 * 111.00061 * 179.97438 * 6 5 4 8 8 C 1.50705 * 109.46950 * 179.97438 * 7 6 5 9 9 O 1.21295 * 120.00318 * 0.02562 * 8 7 6 10 10 N 1.34781 * 120.00019 * 179.97438 * 8 7 6 11 11 C 1.37091 * 119.99848 * 180.02562 * 10 8 7 12 12 H 1.08006 * 120.00658 * 0.02562 * 11 10 8 13 13 C 1.38952 * 120.00048 * 180.02562 * 11 10 8 14 14 N 1.31416 * 119.99557 * 359.97438 * 13 11 10 15 15 Si 1.86794 * 120.00395 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46917 * 89.99920 * 15 13 11 17 17 H 1.48495 * 109.47675 * 209.99935 * 15 13 11 18 18 H 1.48503 * 109.47250 * 330.00561 * 15 13 11 19 19 N 1.46496 * 109.46964 * 239.99518 * 2 1 3 20 20 C 1.34785 * 119.99492 * 85.00486 * 19 2 1 21 21 O 1.21280 * 119.99781 * 359.97438 * 20 19 2 22 22 C 1.50701 * 119.99902 * 179.97438 * 20 19 2 23 23 C 1.51846 * 108.65006 * 179.97438 * 22 20 19 24 24 C 1.53027 * 110.71427 * 187.57942 * 23 22 20 25 25 C 1.51373 * 108.61775 * 274.28060 * 24 23 22 26 26 C 1.29525 * 120.35570 * 71.90218 * 25 24 23 27 27 C 1.51374 * 120.36315 * 359.97438 * 26 25 24 28 28 C 1.51772 * 108.58584 * 304.10325 * 22 20 19 29 29 H 1.09003 * 109.47007 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47092 * 299.99857 * 1 2 3 31 31 H 1.09003 * 109.47253 * 60.00380 * 1 2 3 32 32 H 1.08992 * 109.46976 * 304.99932 * 4 2 1 33 33 H 1.08996 * 109.47152 * 65.00275 * 4 2 1 34 34 H 1.09006 * 109.47357 * 299.99517 * 5 4 2 35 35 H 1.09005 * 109.47615 * 59.99672 * 5 4 2 36 36 H 1.00903 * 110.99464 * 303.95385 * 6 5 4 37 37 H 1.08994 * 109.47459 * 299.99380 * 7 6 5 38 38 H 1.08995 * 109.47425 * 60.00002 * 7 6 5 39 39 H 0.96999 * 119.99904 * 0.02562 * 10 8 7 40 40 H 0.97005 * 119.99757 * 180.02562 * 14 13 11 41 41 H 0.96994 * 120.00731 * 264.99929 * 19 2 1 42 42 H 1.09001 * 108.48999 * 62.03960 * 22 20 19 43 43 H 1.09002 * 109.22356 * 67.27066 * 23 22 20 44 44 H 1.09006 * 109.22051 * 307.88073 * 23 22 20 45 45 H 1.08993 * 109.61615 * 34.02363 * 24 23 22 46 46 H 1.09003 * 109.61285 * 154.54670 * 24 23 22 47 47 H 1.07997 * 119.82383 * 251.87817 * 25 24 23 48 48 H 1.08006 * 119.81765 * 179.97438 * 26 25 24 49 49 H 1.09003 * 109.60851 * 47.84376 * 27 26 25 50 50 H 1.09001 * 109.61406 * 168.36034 * 27 26 25 51 51 H 1.09007 * 109.23680 * 52.06056 * 28 22 20 52 52 H 1.09001 * 109.20224 * 292.67854 * 28 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5648 -0.6133 1.3138 6 7 4.0545 -1.3063 2.5129 7 6 5.5181 -1.2237 2.6078 8 6 5.9825 -1.9436 3.8476 9 8 5.1738 -2.4737 4.5799 10 7 7.2965 -1.9993 4.1423 11 6 7.7190 -2.6546 5.2699 12 1 6.9989 -3.1266 5.9220 13 6 9.0736 -2.7115 5.5740 14 7 9.9498 -2.1376 4.7803 15 14 9.6493 -3.6038 7.1108 16 1 9.9163 -5.0279 6.7855 17 1 10.8937 -2.9694 7.6147 18 1 8.5953 -3.5236 8.1538 19 7 2.0183 -0.6907 -1.1961 20 6 2.1471 -0.0183 -2.3571 21 8 1.8583 1.1584 -2.4116 22 6 2.6499 -0.7286 -3.5875 23 6 2.6929 0.2627 -4.7369 24 6 3.0170 -0.4481 -6.0528 25 6 4.5210 -0.5581 -6.1849 26 6 5.1853 -1.3810 -5.4371 27 6 4.4664 -2.2427 -4.4213 28 6 3.9964 -1.3526 -3.2694 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.6054 -0.2618 2.1369 33 1 1.7517 -1.7715 1.2056 34 1 3.9995 -1.0728 0.4260 35 1 3.8532 0.4370 1.3574 36 1 3.6167 -0.9414 3.3455 37 1 5.9660 -1.6874 1.7289 38 1 5.8204 -0.1779 2.6606 39 1 7.9433 -1.5756 3.5565 40 1 10.8955 -2.1776 4.9924 41 1 2.2490 -1.6318 -1.1526 42 1 1.9477 -1.5234 -3.8390 43 1 3.4583 1.0123 -4.5360 44 1 1.7236 0.7538 -4.8237 45 1 2.5763 -1.4449 -6.0484 46 1 2.6176 0.1277 -6.8877 47 1 5.0428 0.0525 -6.9068 48 1 6.2582 -1.4527 -5.5390 49 1 3.6050 -2.7189 -4.8897 50 1 5.1467 -3.0045 -4.0408 51 1 3.9089 -1.9532 -2.3639 52 1 4.7284 -0.5618 -3.1060 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568711069.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:03:27 Heat of formation + Delta-G solvation = -105.311579 kcal Electronic energy + Delta-G solvation = -28993.462816 eV Core-core repulsion = 24990.964046 eV Total energy + Delta-G solvation = -4002.498771 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.37377 -40.16685 -39.06091 -37.84128 -36.28826 -35.69516 -33.97994 -33.27916 -32.79861 -32.09336 -30.28013 -27.79483 -26.88995 -25.78073 -24.85958 -23.52044 -22.76661 -21.70915 -21.08525 -20.84056 -19.91052 -18.88021 -18.28422 -17.83584 -17.48815 -17.08139 -16.93904 -16.46428 -16.00830 -15.87104 -15.58669 -15.40763 -15.08599 -15.01951 -14.74144 -14.54465 -14.22938 -13.98528 -13.87527 -13.73856 -13.51470 -13.47876 -13.23603 -13.10068 -12.93444 -12.80100 -12.59940 -12.42633 -12.20817 -12.14417 -12.11689 -12.10605 -11.76892 -11.72930 -11.50904 -11.49068 -11.20957 -10.71955 -10.36201 -10.07213 -10.02308 -9.86037 -9.35762 -8.47115 -5.95993 1.38144 1.42062 1.45519 1.54831 1.67964 2.04188 2.24607 2.28907 2.88109 3.20124 3.48171 3.63904 3.71982 3.85839 3.95558 4.04406 4.10318 4.14794 4.23033 4.29477 4.32571 4.42713 4.47609 4.50295 4.52786 4.53775 4.62388 4.63736 4.68254 4.74124 4.84656 4.90591 4.92201 4.95293 5.07899 5.10367 5.18537 5.21304 5.25944 5.32286 5.32840 5.40666 5.43005 5.59938 5.83767 5.87664 6.08176 6.08821 6.38661 6.59198 6.60169 7.11898 7.30209 7.55355 8.10296 8.70295 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.012258 B = 0.002074 C = 0.001822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2283.766455 B =13497.786588 C =15364.168311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.147 3.853 3 H 0.067 0.933 4 C -0.114 4.114 5 C 0.062 3.938 6 N -0.679 5.679 7 C 0.064 3.936 8 C 0.438 3.562 9 O -0.622 6.622 10 N -0.573 5.573 11 C -0.334 4.334 12 H 0.080 0.920 13 C -0.014 4.014 14 N -0.921 5.921 15 Si 0.994 3.006 16 H -0.270 1.270 17 H -0.271 1.271 18 H -0.272 1.272 19 N -0.714 5.714 20 C 0.512 3.488 21 O -0.585 6.585 22 C -0.095 4.095 23 C -0.091 4.091 24 C -0.087 4.087 25 C -0.166 4.166 26 C -0.167 4.167 27 C -0.088 4.088 28 C -0.103 4.103 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.044 0.956 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.078 0.922 35 H 0.026 0.974 36 H 0.344 0.656 37 H 0.104 0.896 38 H 0.061 0.939 39 H 0.396 0.604 40 H 0.278 0.722 41 H 0.413 0.587 42 H 0.117 0.883 43 H 0.048 0.952 44 H 0.063 0.937 45 H 0.084 0.916 46 H 0.076 0.924 47 H 0.108 0.892 48 H 0.107 0.893 49 H 0.086 0.914 50 H 0.078 0.922 51 H 0.083 0.917 52 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.497 2.488 -22.383 26.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.042 3.958 3 H 0.085 0.915 4 C -0.152 4.152 5 C -0.066 4.066 6 N -0.311 5.311 7 C -0.068 4.068 8 C 0.225 3.775 9 O -0.509 6.509 10 N -0.211 5.211 11 C -0.463 4.463 12 H 0.098 0.902 13 C -0.214 4.214 14 N -0.562 5.562 15 Si 0.817 3.183 16 H -0.196 1.196 17 H -0.196 1.196 18 H -0.197 1.197 19 N -0.366 5.366 20 C 0.300 3.700 21 O -0.465 6.465 22 C -0.117 4.117 23 C -0.129 4.129 24 C -0.124 4.124 25 C -0.184 4.184 26 C -0.185 4.185 27 C -0.126 4.126 28 C -0.141 4.141 29 H 0.089 0.911 30 H 0.093 0.907 31 H 0.063 0.937 32 H 0.102 0.898 33 H 0.104 0.896 34 H 0.096 0.904 35 H 0.044 0.956 36 H 0.163 0.837 37 H 0.122 0.878 38 H 0.079 0.921 39 H 0.230 0.770 40 H 0.087 0.913 41 H 0.250 0.750 42 H 0.135 0.865 43 H 0.067 0.933 44 H 0.081 0.919 45 H 0.103 0.897 46 H 0.094 0.906 47 H 0.126 0.874 48 H 0.125 0.875 49 H 0.104 0.896 50 H 0.097 0.903 51 H 0.101 0.899 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -15.024 2.373 -22.193 26.905 hybrid contribution 1.238 0.688 0.804 1.629 sum -13.786 3.061 -21.388 25.630 Atomic orbital electron populations 1.22093 0.94278 1.02856 1.02171 1.20851 0.94558 0.96508 0.83867 0.91461 1.21770 0.93917 1.02376 0.97137 1.22025 0.95941 0.95759 0.92912 1.60113 1.03648 1.60969 1.06365 1.21525 0.90330 0.98893 0.96053 1.20862 0.82417 0.85073 0.89121 1.90488 1.54213 1.52011 1.54154 1.41946 1.06345 1.49203 1.23575 1.19674 0.92362 1.32012 1.02258 0.90229 1.26063 0.95195 0.98093 1.02028 1.69678 1.02932 1.44482 1.39092 0.84917 0.77708 0.78251 0.77410 1.19555 1.19605 1.19719 1.46133 1.66670 1.14665 1.09143 1.21240 0.76331 0.86858 0.85578 1.90676 1.52068 1.18023 1.85694 1.21038 0.99375 0.99221 0.92019 1.21028 1.01772 0.96958 0.93162 1.20812 0.93255 1.01585 0.96725 1.22693 0.96448 0.99334 0.99954 1.22724 0.99809 0.98365 0.97581 1.20808 1.00546 0.96877 0.94325 1.21255 0.94455 0.99161 0.99253 0.91148 0.90745 0.93692 0.89805 0.89609 0.90358 0.95588 0.83732 0.87782 0.92136 0.77010 0.91294 0.75025 0.86498 0.93315 0.91865 0.89728 0.90577 0.87360 0.87453 0.89605 0.90338 0.89861 0.92821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.38 9.48 71.98 0.68 -1.70 16 2 C 0.15 2.50 2.57 45.00 0.12 2.61 16 3 H 0.07 1.45 7.58 -2.39 -0.02 1.43 16 4 C -0.11 -1.93 5.01 30.60 0.15 -1.78 16 5 C 0.06 1.35 5.57 86.30 0.48 1.83 16 6 N -0.68 -20.28 6.13 -517.94 -3.17 -23.46 16 7 C 0.06 2.18 6.17 85.56 0.53 2.71 16 8 C 0.44 20.69 7.82 87.66 0.69 21.37 16 9 O -0.62 -34.17 15.78 -3.08 -0.05 -34.22 16 10 N -0.57 -29.38 5.29 -306.97 -1.62 -31.00 16 11 C -0.33 -18.91 9.68 84.04 0.81 -18.09 16 12 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 13 C -0.01 -0.75 5.50 84.93 0.47 -0.29 16 14 N -0.92 -49.65 13.05 21.66 0.28 -49.37 16 15 Si 0.99 42.74 29.55 68.60 2.03 44.77 16 16 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 17 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 18 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 19 N -0.71 -10.79 4.33 -442.51 -1.92 -12.71 16 20 C 0.51 9.80 7.10 87.66 0.62 10.42 16 21 O -0.58 -16.29 15.42 -3.03 -0.05 -16.33 16 22 C -0.10 -1.28 2.05 -12.32 -0.03 -1.31 16 23 C -0.09 -1.43 4.31 30.22 0.13 -1.30 16 24 C -0.09 -1.01 5.61 30.07 0.17 -0.84 16 25 C -0.17 -2.17 9.34 27.37 0.26 -1.91 16 26 C -0.17 -2.18 9.34 27.37 0.26 -1.92 16 27 C -0.09 -0.95 5.61 30.05 0.17 -0.78 16 28 C -0.10 -1.28 4.86 30.18 0.15 -1.13 16 29 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.08 1.56 7.75 -2.38 -0.02 1.55 16 35 H 0.03 0.58 8.14 -2.38 -0.02 0.56 16 36 H 0.34 10.86 8.43 -89.69 -0.76 10.11 16 37 H 0.10 3.15 8.14 -2.39 -0.02 3.13 16 38 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.40 19.29 7.90 -92.71 -0.73 18.56 16 40 H 0.28 14.00 8.31 -92.70 -0.77 13.23 16 41 H 0.41 4.41 7.61 -92.71 -0.71 3.70 16 42 H 0.12 1.05 7.89 -2.39 -0.02 1.03 16 43 H 0.05 0.97 7.86 -2.39 -0.02 0.95 16 44 H 0.06 1.12 7.77 -2.38 -0.02 1.10 16 45 H 0.08 0.77 6.68 -2.39 -0.02 0.76 16 46 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 47 H 0.11 1.32 8.06 -2.91 -0.02 1.29 16 48 H 0.11 1.36 8.06 -2.91 -0.02 1.34 16 49 H 0.09 0.72 6.68 -2.39 -0.02 0.71 16 50 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 51 H 0.08 0.84 6.98 -2.38 -0.02 0.82 16 52 H 0.05 0.88 7.85 -2.39 -0.02 0.86 16 Total: -1.00 -71.54 414.90 -0.11 -71.65 By element: Atomic # 1 Polarization: 44.05 SS G_CDS: -1.27 Total: 42.79 kcal Atomic # 6 Polarization: 2.24 SS G_CDS: 5.65 Total: 7.89 kcal Atomic # 7 Polarization: -110.11 SS G_CDS: -6.43 Total: -116.54 kcal Atomic # 8 Polarization: -50.46 SS G_CDS: -0.10 Total: -50.55 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Total: -71.54 -0.11 -71.65 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568711069.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.663 kcal (2) G-P(sol) polarization free energy of solvation -71.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds