Wall clock time and date at job start Tue Mar 31 2020 20:31:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 N 1.46901 * 109.46860 * 120.00150 * 2 1 3 5 5 C 1.46900 * 110.99890 * 274.99873 * 4 2 1 6 6 C 1.50698 * 109.47212 * 179.97438 * 5 4 2 7 7 O 1.21289 * 119.99874 * 0.02562 * 6 5 4 8 8 N 1.34785 * 119.99756 * 180.02562 * 6 5 4 9 9 C 1.37103 * 119.99449 * 180.02562 * 8 6 5 10 10 H 1.07993 * 120.00223 * 0.02562 * 9 8 6 11 11 C 1.38947 * 119.99562 * 179.97438 * 9 8 6 12 12 N 1.31418 * 120.00268 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 119.99995 * 179.97438 * 11 9 8 14 14 H 1.48506 * 109.46653 * 60.00172 * 13 11 9 15 15 H 1.48501 * 109.47252 * 179.97438 * 13 11 9 16 16 H 1.48491 * 109.47269 * 300.00396 * 13 11 9 17 17 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 18 18 H 1.09008 * 109.47142 * 174.99740 * 17 2 1 19 19 C 1.52997 * 109.47427 * 295.00153 * 17 2 1 20 20 N 1.46507 * 109.46803 * 55.00556 * 17 2 1 21 21 C 1.34773 * 119.99904 * 154.99883 * 20 17 2 22 22 O 1.21285 * 119.99983 * 359.97438 * 21 20 17 23 23 C 1.50692 * 120.00139 * 179.97438 * 21 20 17 24 24 C 1.53954 * 113.58354 * 279.24550 * 23 21 20 25 25 C 1.53071 * 86.72707 * 220.68698 * 24 23 21 26 26 C 1.52905 * 121.17409 * 150.58067 * 25 24 23 27 27 C 1.53949 * 86.78273 * 100.75252 * 26 25 24 28 28 C 1.52901 * 121.06987 * 259.11972 * 25 24 23 29 29 C 1.52912 * 88.06739 * 24.83306 * 25 24 23 30 30 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 31 31 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 32 32 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 33 33 H 1.00898 * 111.00476 * 38.95263 * 4 2 1 34 34 H 1.09002 * 109.47391 * 300.00224 * 5 4 2 35 35 H 1.09005 * 109.47266 * 59.99895 * 5 4 2 36 36 H 0.96998 * 119.99906 * 359.97438 * 8 6 5 37 37 H 0.97001 * 120.00124 * 180.02562 * 12 11 9 38 38 H 1.09003 * 109.46799 * 60.00212 * 19 17 2 39 39 H 1.09004 * 109.47198 * 179.97438 * 19 17 2 40 40 H 1.09001 * 109.47187 * 300.00018 * 19 17 2 41 41 H 0.96995 * 119.99581 * 334.99203 * 20 17 2 42 42 H 1.09001 * 112.82422 * 50.33134 * 23 21 20 43 43 H 1.09004 * 113.65862 * 335.13673 * 24 23 21 44 44 H 1.09002 * 113.66328 * 106.18705 * 24 23 21 45 45 H 1.08998 * 113.66528 * 215.22083 * 26 25 24 46 46 H 1.08998 * 113.66493 * 346.28652 * 26 25 24 47 47 H 1.08997 * 113.58194 * 270.13477 * 27 26 25 48 48 H 1.09000 * 113.65521 * 139.34764 * 27 26 25 49 49 H 1.09007 * 113.66487 * 13.62967 * 28 25 24 50 50 H 1.08999 * 113.66757 * 144.68765 * 28 25 24 51 51 H 1.09001 * 113.65815 * 220.69450 * 29 25 24 52 52 H 1.08996 * 113.66606 * 89.64102 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 2.0824 0.2225 2.3469 6 6 2.5872 -0.5219 3.5561 7 8 2.8676 -1.6988 3.4702 8 7 2.7271 0.1203 4.7328 9 6 3.1869 -0.5569 5.8327 10 1 3.4373 -1.6046 5.7561 11 6 3.3316 0.1052 7.0457 12 7 3.0273 1.3802 7.1388 13 14 3.9573 -0.8175 8.5446 14 1 5.3134 -1.3544 8.2648 15 1 4.0214 0.1077 9.7044 16 1 3.0354 -1.9392 8.8558 17 6 2.0401 -0.7213 -1.2492 18 1 3.1264 -0.6444 -1.2951 19 6 1.6353 -2.1955 -1.1879 20 7 1.4560 -0.1036 -2.4424 21 6 2.0914 -0.1938 -3.6275 22 8 3.1470 -0.7859 -3.7061 23 6 1.4904 0.4410 -4.8549 24 6 0.3858 -0.4084 -5.5096 25 6 0.9904 0.0007 -6.8550 26 6 0.8951 -0.9142 -8.0765 27 6 -0.2612 -0.0156 -8.5512 28 6 0.3589 1.1074 -7.7000 29 6 2.3202 0.2188 -6.1324 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.4495 -1.4979 1.4101 34 1 2.7588 1.0462 2.1183 35 1 1.0870 0.6163 2.5525 36 1 2.5032 1.0616 4.8013 37 1 3.1287 1.8425 7.9855 38 1 0.5490 -2.2724 -1.1421 39 1 1.9983 -2.7093 -2.0781 40 1 2.0699 -2.6550 -0.3002 41 1 0.6119 0.3701 -2.3794 42 1 1.2043 1.4808 -4.6962 43 1 0.4703 -1.4743 -5.2978 44 1 -0.6196 -0.0208 -5.3449 45 1 1.7726 -0.8752 -8.7218 46 1 0.5881 -1.9324 -7.8376 47 1 -1.2397 -0.3408 -8.1977 48 1 -0.2450 0.1890 -9.6217 49 1 -0.3765 1.7043 -7.1604 50 1 1.0857 1.7147 -8.2396 51 1 2.8581 1.1067 -6.4647 52 1 2.9494 -0.6705 -6.0961 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570626564.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:42 Heat of formation + Delta-G solvation = -38.700945 kcal Electronic energy + Delta-G solvation = -28907.829872 eV Core-core repulsion = 24908.219555 eV Total energy + Delta-G solvation = -3999.610317 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.20850 -39.57621 -38.42512 -37.30914 -34.95351 -34.44931 -33.78103 -31.31097 -30.85486 -29.12340 -26.50224 -26.31570 -26.18573 -25.89363 -24.54692 -23.66938 -22.14990 -20.17595 -19.80527 -19.29895 -18.37072 -17.93339 -17.55056 -16.23350 -15.97665 -15.95751 -15.60765 -15.54880 -15.08016 -14.82857 -14.52009 -14.29402 -13.98188 -13.80346 -13.54949 -13.28285 -13.20042 -12.93107 -12.86556 -12.50099 -12.40384 -12.28078 -12.21294 -12.15740 -11.89175 -11.54364 -11.42327 -11.41869 -11.28247 -11.02607 -10.92991 -10.83370 -10.67160 -10.50524 -10.43945 -10.38807 -10.21176 -9.71509 -9.49814 -9.16396 -8.47367 -8.07770 -7.95812 -6.41511 -3.82371 2.51424 3.00799 3.20617 3.26239 3.30903 3.90754 3.94754 4.02622 4.11805 4.16977 4.28473 4.34041 4.37250 4.42222 4.70855 4.78651 4.89549 4.95482 5.02513 5.09052 5.18519 5.23514 5.26323 5.31404 5.32072 5.37849 5.40228 5.43875 5.48034 5.54499 5.55836 5.62503 5.64496 5.67972 5.79223 5.84744 5.91166 5.96755 5.99593 6.01281 6.10608 6.13760 6.25971 6.37081 6.49316 7.16556 7.40834 7.55304 7.62486 8.06223 8.14767 8.61327 9.17979 9.54240 10.05721 10.76090 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.039002 B = 0.001611 C = 0.001598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.740936 B =17377.782345 C =17520.629407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.078 3.922 3 H 0.082 0.918 4 N -0.658 5.658 5 C 0.051 3.949 6 C 0.440 3.560 7 O -0.583 6.583 8 N -0.563 5.563 9 C -0.300 4.300 10 H 0.103 0.897 11 C 0.023 3.977 12 N -0.902 5.902 13 Si 0.931 3.069 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.274 1.274 17 C 0.152 3.848 18 H 0.095 0.905 19 C -0.162 4.162 20 N -0.725 5.725 21 C 0.522 3.478 22 O -0.537 6.537 23 C -0.136 4.136 24 C -0.096 4.096 25 C -0.108 4.108 26 C -0.127 4.127 27 C -0.141 4.141 28 C -0.117 4.117 29 C -0.102 4.102 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.065 0.935 33 H 0.353 0.647 34 H 0.086 0.914 35 H 0.044 0.956 36 H 0.392 0.608 37 H 0.272 0.728 38 H 0.052 0.948 39 H 0.054 0.946 40 H 0.080 0.920 41 H 0.396 0.604 42 H 0.111 0.889 43 H 0.088 0.912 44 H 0.075 0.925 45 H 0.083 0.917 46 H 0.068 0.932 47 H 0.079 0.921 48 H 0.066 0.934 49 H 0.068 0.932 50 H 0.084 0.916 51 H 0.072 0.928 52 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.375 2.858 -28.519 30.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.033 4.033 3 H 0.100 0.900 4 N -0.291 5.291 5 C -0.081 4.081 6 C 0.226 3.774 7 O -0.467 6.467 8 N -0.200 5.200 9 C -0.430 4.430 10 H 0.120 0.880 11 C -0.179 4.179 12 N -0.543 5.543 13 Si 0.758 3.242 14 H -0.199 1.199 15 H -0.210 1.210 16 H -0.199 1.199 17 C 0.048 3.952 18 H 0.113 0.887 19 C -0.220 4.220 20 N -0.378 5.378 21 C 0.308 3.692 22 O -0.413 6.413 23 C -0.157 4.157 24 C -0.134 4.134 25 C -0.108 4.108 26 C -0.164 4.164 27 C -0.178 4.178 28 C -0.154 4.154 29 C -0.140 4.140 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.173 0.827 34 H 0.104 0.896 35 H 0.062 0.938 36 H 0.225 0.775 37 H 0.082 0.918 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.099 0.901 41 H 0.231 0.769 42 H 0.129 0.871 43 H 0.107 0.893 44 H 0.094 0.906 45 H 0.101 0.899 46 H 0.086 0.914 47 H 0.097 0.903 48 H 0.085 0.915 49 H 0.087 0.913 50 H 0.103 0.897 51 H 0.090 0.910 52 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -8.733 1.836 -28.585 29.945 hybrid contribution -1.256 0.692 1.230 1.889 sum -9.989 2.528 -27.355 29.231 Atomic orbital electron populations 1.22612 0.97440 1.02695 1.01991 1.21724 0.92560 0.98170 0.90869 0.90019 1.60023 1.57727 1.09097 1.02256 1.21704 0.99939 0.95689 0.90784 1.19796 0.85220 0.88253 0.84157 1.90527 1.55266 1.16274 1.84595 1.41853 1.57793 1.12435 1.07918 1.19663 1.40086 0.96465 0.86765 0.87954 1.25257 0.97616 0.95771 0.99242 1.69606 1.48624 1.08853 1.27265 0.85914 0.79479 0.78802 0.80005 1.19872 1.20988 1.19930 1.20884 0.99472 0.92419 0.82450 0.88692 1.22164 1.00961 0.95781 1.03119 1.46257 1.25821 1.57186 1.08509 1.20468 0.84621 0.79931 0.84222 1.90710 1.22438 1.42746 1.85409 1.22750 0.99270 1.00856 0.92854 1.22616 0.97168 1.00121 0.93491 1.22459 0.97121 0.98096 0.93160 1.22741 0.98785 0.98120 0.96801 1.22826 0.98241 0.97079 0.99654 1.22664 0.99607 0.95699 0.97420 1.22692 0.95644 1.03171 0.92482 0.92000 0.92523 0.91646 0.82664 0.89579 0.93790 0.77480 0.91839 0.92946 0.92673 0.90079 0.76855 0.87124 0.89309 0.90587 0.89857 0.91365 0.90271 0.91536 0.91317 0.89739 0.90970 0.88459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.73 8.68 37.16 0.32 -1.40 16 2 C 0.08 0.90 2.64 -67.71 -0.18 0.72 16 3 H 0.08 0.93 7.80 -51.93 -0.40 0.53 16 4 N -0.66 -10.18 5.23 -107.99 -0.56 -10.75 16 5 C 0.05 0.88 5.96 -4.98 -0.03 0.85 16 6 C 0.44 10.32 7.82 -10.98 -0.09 10.23 16 7 O -0.58 -15.76 15.78 5.55 0.09 -15.67 16 8 N -0.56 -14.23 5.29 -10.96 -0.06 -14.29 16 9 C -0.30 -8.39 9.68 -14.93 -0.14 -8.53 16 10 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 11 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 12 N -0.90 -24.49 13.05 55.50 0.72 -23.77 16 13 Si 0.93 21.10 29.55 -169.99 -5.02 16.08 16 14 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 15 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 16 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 17 C 0.15 1.81 2.63 -67.93 -0.18 1.63 16 18 H 0.10 1.42 7.58 -51.92 -0.39 1.03 16 19 C -0.16 -1.94 8.86 37.16 0.33 -1.61 16 20 N -0.72 -6.85 4.99 -53.80 -0.27 -7.12 16 21 C 0.52 5.72 7.32 -10.99 -0.08 5.64 16 22 O -0.54 -8.24 15.56 5.55 0.09 -8.15 16 23 C -0.14 -1.03 4.14 -90.79 -0.38 -1.41 16 24 C -0.10 -0.62 7.40 -26.20 -0.19 -0.81 16 25 C -0.11 -0.68 1.11 -154.63 -0.17 -0.86 16 26 C -0.13 -0.76 7.84 -26.29 -0.21 -0.97 16 27 C -0.14 -0.72 8.08 -25.75 -0.21 -0.92 16 28 C -0.12 -0.61 7.84 -26.29 -0.21 -0.81 16 29 C -0.10 -0.82 7.16 -26.28 -0.19 -1.01 16 30 H 0.06 0.60 7.45 -51.93 -0.39 0.22 16 31 H 0.06 0.39 6.29 -51.93 -0.33 0.06 16 32 H 0.06 0.61 6.55 -51.93 -0.34 0.27 16 33 H 0.35 5.63 7.39 -39.29 -0.29 5.34 16 34 H 0.09 1.38 8.06 -51.93 -0.42 0.96 16 35 H 0.04 0.67 7.44 -51.93 -0.39 0.28 16 36 H 0.39 9.44 7.90 -40.82 -0.32 9.12 16 37 H 0.27 7.00 8.31 -40.82 -0.34 6.67 16 38 H 0.05 0.54 6.56 -51.93 -0.34 0.20 16 39 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.08 1.10 7.13 -51.93 -0.37 0.73 16 41 H 0.40 2.70 6.58 -40.82 -0.27 2.43 16 42 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.09 0.66 8.09 -51.93 -0.42 0.24 16 44 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 46 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 48 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 49 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 50 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 51 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 52 H 0.10 0.97 7.44 -51.93 -0.39 0.58 16 LS Contribution 412.60 15.07 6.22 6.22 Total: -1.00 -32.68 412.60 -9.29 -41.97 By element: Atomic # 1 Polarization: 23.02 SS G_CDS: -8.79 Total: 14.23 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: -1.69 Total: 1.25 kcal Atomic # 7 Polarization: -55.76 SS G_CDS: -0.17 Total: -55.92 kcal Atomic # 8 Polarization: -24.00 SS G_CDS: 0.17 Total: -23.82 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -32.68 -9.29 -41.97 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570626564.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.267 kcal (2) G-P(sol) polarization free energy of solvation -32.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds