Wall clock time and date at job start Tue Mar 31 2020 20:31:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 N 1.46901 * 109.46860 * 120.00150 * 2 1 3 5 5 C 1.46900 * 110.99890 * 274.99873 * 4 2 1 6 6 C 1.50698 * 109.47212 * 179.97438 * 5 4 2 7 7 O 1.21289 * 119.99874 * 0.02562 * 6 5 4 8 8 N 1.34785 * 119.99756 * 180.02562 * 6 5 4 9 9 C 1.37103 * 119.99449 * 180.02562 * 8 6 5 10 10 H 1.07993 * 120.00223 * 0.02562 * 9 8 6 11 11 C 1.38947 * 119.99562 * 179.97438 * 9 8 6 12 12 N 1.31418 * 120.00268 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 119.99995 * 179.97438 * 11 9 8 14 14 H 1.48506 * 109.46653 * 60.00172 * 13 11 9 15 15 H 1.48501 * 109.47252 * 179.97438 * 13 11 9 16 16 H 1.48491 * 109.47269 * 300.00396 * 13 11 9 17 17 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 18 18 H 1.09008 * 109.47142 * 174.99740 * 17 2 1 19 19 C 1.52997 * 109.47427 * 295.00153 * 17 2 1 20 20 N 1.46507 * 109.46803 * 55.00556 * 17 2 1 21 21 C 1.34773 * 119.99904 * 154.99883 * 20 17 2 22 22 O 1.21285 * 119.99983 * 359.97438 * 21 20 17 23 23 C 1.50692 * 120.00139 * 179.97438 * 21 20 17 24 24 C 1.53954 * 113.58354 * 279.24550 * 23 21 20 25 25 C 1.53071 * 86.72707 * 220.68698 * 24 23 21 26 26 C 1.52905 * 121.17409 * 150.58067 * 25 24 23 27 27 C 1.53949 * 86.78273 * 100.75252 * 26 25 24 28 28 C 1.52901 * 121.06987 * 259.11972 * 25 24 23 29 29 C 1.52912 * 88.06739 * 24.83306 * 25 24 23 30 30 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 31 31 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 32 32 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 33 33 H 1.00898 * 111.00476 * 38.95263 * 4 2 1 34 34 H 1.09002 * 109.47391 * 300.00224 * 5 4 2 35 35 H 1.09005 * 109.47266 * 59.99895 * 5 4 2 36 36 H 0.96998 * 119.99906 * 359.97438 * 8 6 5 37 37 H 0.97001 * 120.00124 * 180.02562 * 12 11 9 38 38 H 1.09003 * 109.46799 * 60.00212 * 19 17 2 39 39 H 1.09004 * 109.47198 * 179.97438 * 19 17 2 40 40 H 1.09001 * 109.47187 * 300.00018 * 19 17 2 41 41 H 0.96995 * 119.99581 * 334.99203 * 20 17 2 42 42 H 1.09001 * 112.82422 * 50.33134 * 23 21 20 43 43 H 1.09004 * 113.65862 * 335.13673 * 24 23 21 44 44 H 1.09002 * 113.66328 * 106.18705 * 24 23 21 45 45 H 1.08998 * 113.66528 * 215.22083 * 26 25 24 46 46 H 1.08998 * 113.66493 * 346.28652 * 26 25 24 47 47 H 1.08997 * 113.58194 * 270.13477 * 27 26 25 48 48 H 1.09000 * 113.65521 * 139.34764 * 27 26 25 49 49 H 1.09007 * 113.66487 * 13.62967 * 28 25 24 50 50 H 1.08999 * 113.66757 * 144.68765 * 28 25 24 51 51 H 1.09001 * 113.65815 * 220.69450 * 29 25 24 52 52 H 1.08996 * 113.66606 * 89.64102 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 2.0824 0.2225 2.3469 6 6 2.5872 -0.5219 3.5561 7 8 2.8676 -1.6988 3.4702 8 7 2.7271 0.1203 4.7328 9 6 3.1869 -0.5569 5.8327 10 1 3.4373 -1.6046 5.7561 11 6 3.3316 0.1052 7.0457 12 7 3.0273 1.3802 7.1388 13 14 3.9573 -0.8175 8.5446 14 1 5.3134 -1.3544 8.2648 15 1 4.0214 0.1077 9.7044 16 1 3.0354 -1.9392 8.8558 17 6 2.0401 -0.7213 -1.2492 18 1 3.1264 -0.6444 -1.2951 19 6 1.6353 -2.1955 -1.1879 20 7 1.4560 -0.1036 -2.4424 21 6 2.0914 -0.1938 -3.6275 22 8 3.1470 -0.7859 -3.7061 23 6 1.4904 0.4410 -4.8549 24 6 0.3858 -0.4084 -5.5096 25 6 0.9904 0.0007 -6.8550 26 6 0.8951 -0.9142 -8.0765 27 6 -0.2612 -0.0156 -8.5512 28 6 0.3589 1.1074 -7.7000 29 6 2.3202 0.2188 -6.1324 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.4495 -1.4979 1.4101 34 1 2.7588 1.0462 2.1183 35 1 1.0870 0.6163 2.5525 36 1 2.5032 1.0616 4.8013 37 1 3.1287 1.8425 7.9855 38 1 0.5490 -2.2724 -1.1421 39 1 1.9983 -2.7093 -2.0781 40 1 2.0699 -2.6550 -0.3002 41 1 0.6119 0.3701 -2.3794 42 1 1.2043 1.4808 -4.6962 43 1 0.4703 -1.4743 -5.2978 44 1 -0.6196 -0.0208 -5.3449 45 1 1.7726 -0.8752 -8.7218 46 1 0.5881 -1.9324 -7.8376 47 1 -1.2397 -0.3408 -8.1977 48 1 -0.2450 0.1890 -9.6217 49 1 -0.3765 1.7043 -7.1604 50 1 1.0857 1.7147 -8.2396 51 1 2.8581 1.1067 -6.4647 52 1 2.9494 -0.6705 -6.0961 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570626564.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:41 Heat of formation + Delta-G solvation = -61.381326 kcal Electronic energy + Delta-G solvation = -28908.813367 eV Core-core repulsion = 24908.219555 eV Total energy + Delta-G solvation = -4000.593812 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.85286 -40.49599 -40.02168 -38.49612 -36.05724 -35.52207 -35.32965 -33.27533 -32.01828 -30.07715 -28.00511 -27.00679 -26.66639 -26.47936 -25.99517 -24.85280 -22.79413 -21.16798 -20.96364 -20.71813 -19.92685 -18.88380 -18.40351 -17.66594 -17.13119 -16.85440 -16.56931 -16.39522 -16.12471 -16.04676 -15.83481 -15.66641 -15.24265 -15.08881 -14.71496 -14.32318 -13.99645 -13.80397 -13.67132 -13.52800 -13.46367 -13.30625 -13.16542 -13.05172 -12.99114 -12.87243 -12.86724 -12.55924 -12.43030 -12.12487 -11.90990 -11.89278 -11.82194 -11.75617 -11.50007 -11.21815 -10.98654 -10.96156 -10.51292 -10.35048 -10.07887 -10.01151 -9.30518 -8.46368 -5.95067 1.39848 1.41884 1.52579 1.65552 2.05941 2.12801 2.30924 3.00052 3.20992 3.43339 3.50172 3.55714 3.61853 3.70715 3.78322 3.87056 3.91515 4.00171 4.21515 4.24101 4.30639 4.43593 4.46218 4.46601 4.55541 4.60270 4.62469 4.74447 4.75432 4.82618 4.86862 4.89657 4.94259 4.96912 5.02539 5.04035 5.08119 5.12206 5.15372 5.22674 5.36454 5.40953 5.41428 5.53123 5.57255 5.64017 5.89421 6.10268 6.40935 6.60376 6.62256 7.12963 7.32827 7.56724 8.12342 8.70627 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.039002 B = 0.001611 C = 0.001598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.740936 B =17377.782345 C =17520.629407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.084 3.916 3 H 0.089 0.911 4 N -0.677 5.677 5 C 0.068 3.932 6 C 0.436 3.564 7 O -0.624 6.624 8 N -0.572 5.572 9 C -0.336 4.336 10 H 0.078 0.922 11 C -0.011 4.011 12 N -0.919 5.919 13 Si 0.992 3.008 14 H -0.274 1.274 15 H -0.270 1.270 16 H -0.271 1.271 17 C 0.159 3.841 18 H 0.058 0.942 19 C -0.154 4.154 20 N -0.708 5.708 21 C 0.517 3.483 22 O -0.588 6.588 23 C -0.128 4.128 24 C -0.089 4.089 25 C -0.105 4.105 26 C -0.135 4.135 27 C -0.136 4.136 28 C -0.111 4.111 29 C -0.111 4.111 30 H 0.061 0.939 31 H 0.087 0.913 32 H 0.065 0.935 33 H 0.349 0.651 34 H 0.101 0.899 35 H 0.073 0.927 36 H 0.397 0.603 37 H 0.278 0.722 38 H 0.074 0.926 39 H 0.039 0.961 40 H 0.061 0.939 41 H 0.414 0.586 42 H 0.139 0.861 43 H 0.074 0.926 44 H 0.101 0.899 45 H 0.080 0.920 46 H 0.062 0.938 47 H 0.085 0.915 48 H 0.071 0.929 49 H 0.081 0.919 50 H 0.087 0.913 51 H 0.076 0.924 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.671 4.661 -29.297 32.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.026 4.026 3 H 0.107 0.893 4 N -0.310 5.310 5 C -0.064 4.064 6 C 0.224 3.776 7 O -0.510 6.510 8 N -0.210 5.210 9 C -0.466 4.466 10 H 0.096 0.904 11 C -0.211 4.211 12 N -0.560 5.560 13 Si 0.816 3.184 14 H -0.200 1.200 15 H -0.194 1.194 16 H -0.196 1.196 17 C 0.053 3.947 18 H 0.076 0.924 19 C -0.213 4.213 20 N -0.362 5.362 21 C 0.305 3.695 22 O -0.468 6.468 23 C -0.149 4.149 24 C -0.127 4.127 25 C -0.106 4.106 26 C -0.173 4.173 27 C -0.173 4.173 28 C -0.148 4.148 29 C -0.149 4.149 30 H 0.080 0.920 31 H 0.105 0.895 32 H 0.084 0.916 33 H 0.169 0.831 34 H 0.120 0.880 35 H 0.091 0.909 36 H 0.231 0.769 37 H 0.087 0.913 38 H 0.093 0.907 39 H 0.059 0.941 40 H 0.080 0.920 41 H 0.252 0.748 42 H 0.157 0.843 43 H 0.093 0.907 44 H 0.119 0.881 45 H 0.099 0.901 46 H 0.081 0.919 47 H 0.103 0.897 48 H 0.090 0.910 49 H 0.100 0.900 50 H 0.105 0.895 51 H 0.095 0.905 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -11.077 3.688 -29.378 31.613 hybrid contribution -0.500 0.097 1.398 1.488 sum -11.577 3.784 -27.980 30.517 Atomic orbital electron populations 1.22549 0.94810 1.03240 1.03535 1.21708 0.94536 0.97746 0.88609 0.89270 1.59954 1.58955 1.09276 1.02814 1.21538 1.01330 0.95158 0.88404 1.20920 0.83461 0.88032 0.85191 1.90496 1.56637 1.18436 1.85464 1.41916 1.58320 1.12594 1.08148 1.19634 1.42342 0.96003 0.88600 0.90404 1.26011 0.97172 0.96613 1.01312 1.69662 1.48507 1.09623 1.28185 0.85006 0.78657 0.77875 0.76896 1.19952 1.19408 1.19641 1.20609 0.97618 0.92698 0.83757 0.92357 1.22069 1.02156 0.95628 1.01401 1.46060 1.26185 1.56595 1.07334 1.21149 0.83933 0.79125 0.85285 1.90696 1.24880 1.45068 1.86179 1.22836 0.99323 1.02163 0.90562 1.22585 0.97926 0.99192 0.92996 1.22475 0.95814 0.99018 0.93246 1.22799 0.99411 0.98109 0.96937 1.22820 0.97930 0.96492 1.00082 1.22668 0.99696 0.95430 0.96986 1.22681 0.96388 1.02157 0.93687 0.91959 0.89461 0.91630 0.83141 0.88047 0.90941 0.76932 0.91296 0.90691 0.94137 0.92048 0.74755 0.84322 0.90739 0.88101 0.90131 0.91918 0.89670 0.90992 0.90030 0.89474 0.90525 0.91314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.73 8.68 71.98 0.62 -2.11 16 2 C 0.08 1.80 2.64 44.92 0.12 1.92 16 3 H 0.09 1.81 7.80 -2.39 -0.02 1.79 16 4 N -0.68 -20.53 5.23 -495.56 -2.59 -23.12 16 5 C 0.07 2.25 5.96 85.56 0.51 2.76 16 6 C 0.44 20.67 7.82 87.66 0.69 21.35 16 7 O -0.62 -34.73 15.78 -3.06 -0.05 -34.78 16 8 N -0.57 -29.30 5.29 -306.98 -1.62 -30.92 16 9 C -0.34 -19.19 9.68 84.04 0.81 -18.37 16 10 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 11 C -0.01 -0.60 5.50 84.92 0.47 -0.13 16 12 N -0.92 -49.42 13.05 21.66 0.28 -49.13 16 13 Si 0.99 43.09 29.55 68.60 2.03 45.12 16 14 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 15 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 16 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 17 C 0.16 3.71 2.63 44.99 0.12 3.83 16 18 H 0.06 1.82 7.58 -2.38 -0.02 1.80 16 19 C -0.15 -3.72 8.86 71.98 0.64 -3.08 16 20 N -0.71 -12.23 4.99 -442.52 -2.21 -14.43 16 21 C 0.52 11.08 7.32 87.66 0.64 11.72 16 22 O -0.59 -18.88 15.56 -3.05 -0.05 -18.92 16 23 C -0.13 -1.71 4.14 -10.91 -0.05 -1.76 16 24 C -0.09 -0.95 7.40 30.94 0.23 -0.72 16 25 C -0.11 -1.17 1.11 -52.26 -0.06 -1.22 16 26 C -0.14 -1.51 7.84 30.88 0.24 -1.26 16 27 C -0.14 -1.08 8.08 31.23 0.25 -0.83 16 28 C -0.11 -0.85 7.84 30.88 0.24 -0.61 16 29 C -0.11 -1.74 7.16 30.89 0.22 -1.52 16 30 H 0.06 0.98 7.45 -2.39 -0.02 0.96 16 31 H 0.09 0.78 6.29 -2.39 -0.02 0.76 16 32 H 0.06 1.01 6.55 -2.39 -0.02 1.00 16 33 H 0.35 11.05 7.39 -89.70 -0.66 10.39 16 34 H 0.10 3.08 8.06 -2.39 -0.02 3.06 16 35 H 0.07 2.02 7.44 -2.38 -0.02 2.00 16 36 H 0.40 19.16 7.90 -92.71 -0.73 18.43 16 37 H 0.28 14.01 8.31 -92.71 -0.77 13.24 16 38 H 0.07 1.44 6.56 -2.39 -0.02 1.43 16 39 H 0.04 1.08 8.14 -2.38 -0.02 1.06 16 40 H 0.06 1.73 7.13 -2.39 -0.02 1.71 16 41 H 0.41 4.19 6.58 -92.71 -0.61 3.58 16 42 H 0.14 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.07 1.03 8.09 -2.39 -0.02 1.01 16 44 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 45 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 46 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 47 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 48 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 49 H 0.08 0.45 8.14 -2.38 -0.02 0.43 16 50 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 51 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 52 H 0.07 1.48 7.44 -2.39 -0.02 1.46 16 Total: -1.00 -74.12 412.60 0.43 -73.69 By element: Atomic # 1 Polarization: 43.62 SS G_CDS: -1.06 Total: 42.56 kcal Atomic # 6 Polarization: 4.25 SS G_CDS: 5.70 Total: 9.95 kcal Atomic # 7 Polarization: -111.47 SS G_CDS: -6.14 Total: -117.61 kcal Atomic # 8 Polarization: -53.61 SS G_CDS: -0.10 Total: -53.71 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Total: -74.12 0.43 -73.69 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570626564.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.308 kcal (2) G-P(sol) polarization free energy of solvation -74.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds