Wall clock time and date at job start Tue Mar 31 2020 20:47:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47326 * 2 1 4 4 C 1.53003 * 109.47107 * 239.99283 * 2 1 3 5 5 N 1.46494 * 109.47046 * 184.99943 * 4 2 1 6 6 C 1.46498 * 120.00450 * 270.00298 * 5 4 2 7 7 C 1.34783 * 120.00063 * 90.00184 * 5 4 2 8 8 O 1.21276 * 119.99558 * 2.52704 * 7 5 4 9 9 C 1.50696 * 120.00274 * 182.52172 * 7 5 4 10 10 C 1.52998 * 109.63973 * 309.36855 * 9 7 5 11 11 C 1.53017 * 109.64434 * 188.94610 * 9 7 5 12 12 C 1.50070 * 110.14845 * 289.54133 * 11 9 7 13 13 C 1.29443 * 124.07625 * 342.86800 * 12 11 9 14 14 C 1.50071 * 124.07019 * 0.49255 * 13 12 11 15 15 C 1.53033 * 110.14381 * 342.82935 * 14 13 12 16 16 N 1.46903 * 109.47148 * 119.99657 * 2 1 3 17 17 C 1.46904 * 111.00003 * 275.00137 * 16 2 1 18 18 C 1.50701 * 109.46915 * 179.97438 * 17 16 2 19 19 O 1.21283 * 120.00366 * 359.97438 * 18 17 16 20 20 N 1.34774 * 119.99483 * 179.97438 * 18 17 16 21 21 C 1.37100 * 119.99946 * 179.97438 * 20 18 17 22 22 H 1.07998 * 119.99850 * 0.02562 * 21 20 18 23 23 C 1.38949 * 120.00514 * 180.02562 * 21 20 18 24 24 N 1.31419 * 119.99587 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 120.00497 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47080 * 89.99559 * 25 23 21 27 27 H 1.48503 * 109.47109 * 210.00163 * 25 23 21 28 28 H 1.48503 * 109.46536 * 329.99953 * 25 23 21 29 29 H 1.09000 * 109.47132 * 300.00599 * 1 2 3 30 30 H 1.08997 * 109.47151 * 60.00028 * 1 2 3 31 31 H 1.09000 * 109.47330 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46482 * 65.00217 * 4 2 1 33 33 H 1.08998 * 109.47034 * 305.00078 * 4 2 1 34 34 H 1.09004 * 109.47380 * 264.67652 * 6 5 4 35 35 H 1.09000 * 109.46957 * 24.67091 * 6 5 4 36 36 H 1.09001 * 109.47906 * 144.67213 * 6 5 4 37 37 H 1.08997 * 109.47269 * 316.86055 * 10 9 7 38 38 H 1.09001 * 109.47131 * 76.86640 * 10 9 7 39 39 H 1.09001 * 109.47056 * 196.86087 * 10 9 7 40 40 H 1.09002 * 109.35533 * 49.74910 * 11 9 7 41 41 H 1.09000 * 109.36076 * 169.33460 * 11 9 7 42 42 H 1.07997 * 117.96500 * 162.88844 * 12 11 9 43 43 H 1.07999 * 117.96501 * 180.46626 * 13 12 11 44 44 H 1.08999 * 109.36144 * 103.05655 * 14 13 12 45 45 H 1.08999 * 109.35403 * 222.77206 * 14 13 12 46 46 H 1.09001 * 109.65820 * 289.78322 * 15 14 13 47 47 H 1.08996 * 109.64030 * 169.14605 * 15 14 13 48 48 H 1.00893 * 111.00001 * 151.04406 * 16 2 1 49 49 H 1.09006 * 109.46679 * 299.99467 * 17 16 2 50 50 H 1.08992 * 109.47285 * 59.99580 * 17 16 2 51 51 H 0.97002 * 120.00699 * 359.97438 * 20 18 17 52 52 H 0.96998 * 120.00000 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7214 -1.2492 5 7 3.5000 -0.8265 -1.1905 6 6 4.3343 0.2338 -1.7612 7 6 4.0757 -1.8988 -0.6113 8 8 3.3860 -2.7982 -0.1798 9 6 5.5764 -1.9802 -0.5002 10 6 6.2088 -1.7066 -1.8662 11 6 5.9815 -3.3739 -0.0156 12 6 5.5939 -3.5539 1.4230 13 6 5.3016 -2.5790 2.2228 14 6 5.2991 -1.1332 1.8203 15 6 6.0792 -0.9478 0.5169 16 7 2.0197 -0.6924 1.1995 17 6 2.0824 0.2227 2.3469 18 6 2.5873 -0.5217 3.5561 19 8 2.8669 -1.6987 3.4706 20 7 2.7282 0.1207 4.7325 21 6 3.1870 -0.5565 5.8327 22 1 3.4359 -1.6046 5.7566 23 6 3.3318 0.1056 7.0457 24 7 3.0293 1.3811 7.1382 25 14 3.9576 -0.8170 8.5446 26 1 5.4386 -0.7239 8.6004 27 1 3.3771 -0.2174 9.7729 28 1 3.5544 -2.2432 8.4518 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.7516 -0.1585 -2.1369 33 1 1.6054 -1.7199 -1.2950 34 1 4.6209 -0.0366 -2.7775 35 1 3.7731 1.1681 -1.7785 36 1 5.2298 0.3591 -1.1524 37 1 5.6507 -2.2369 -2.6377 38 1 6.1838 -0.6362 -2.0704 39 1 7.2427 -2.0519 -1.8636 40 1 5.4790 -4.1274 -0.6221 41 1 7.0603 -3.4922 -0.1166 42 1 5.5569 -4.5593 1.8156 43 1 5.0430 -2.8211 3.2431 44 1 4.2713 -0.7997 1.6772 45 1 5.7657 -0.5388 2.6058 46 1 7.1424 -1.1023 0.7006 47 1 5.9134 0.0579 0.1306 48 1 2.9172 -1.1205 1.0288 49 1 2.7589 1.0463 2.1182 50 1 1.0871 0.6165 2.5525 51 1 2.5050 1.0623 4.8008 52 1 3.1300 1.8433 7.9851 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571389685.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:44 Heat of formation + Delta-G solvation = -54.992761 kcal Electronic energy + Delta-G solvation = -32720.415301 eV Core-core repulsion = 28720.098518 eV Total energy + Delta-G solvation = -4000.316783 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.23580 -40.11936 -38.86793 -37.55118 -36.39345 -35.78099 -33.78382 -33.20544 -32.34235 -31.52439 -28.62102 -28.03617 -27.28786 -27.14091 -25.74930 -24.14826 -23.24952 -21.41017 -21.15793 -20.51152 -19.87838 -18.78161 -18.10594 -17.47409 -17.40281 -17.07144 -16.51869 -16.37111 -16.12252 -15.93743 -15.53696 -15.39353 -15.02459 -14.69912 -14.62319 -14.23992 -14.22412 -13.81768 -13.68631 -13.60067 -13.49475 -13.35529 -13.14065 -12.99340 -12.95932 -12.89644 -12.86249 -12.62085 -12.53785 -12.41276 -12.26780 -12.14632 -12.13697 -11.94418 -11.46198 -11.31799 -10.94231 -10.50875 -10.23422 -9.96129 -9.75569 -9.56363 -9.23331 -8.45239 -5.92137 1.34814 1.37959 1.50627 1.54976 1.70911 2.05606 2.09707 2.27980 2.96068 3.21733 3.43224 3.50989 3.62352 3.73079 3.92096 4.06277 4.13315 4.19923 4.25792 4.29276 4.36033 4.39563 4.41589 4.47170 4.52576 4.55312 4.59150 4.64036 4.71093 4.80577 4.86213 4.87708 4.89714 4.91457 4.93815 5.01305 5.07254 5.14806 5.21472 5.34727 5.36587 5.37593 5.42070 5.62530 5.80685 5.94861 6.18448 6.21535 6.41606 6.61778 6.64466 7.16102 7.29185 7.59281 8.16833 8.72702 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.012869 B = 0.004249 C = 0.003542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2175.295250 B = 6587.525855 C = 7903.290343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.060 3.940 3 H 0.058 0.942 4 C 0.112 3.888 5 N -0.623 5.623 6 C 0.051 3.949 7 C 0.509 3.491 8 O -0.555 6.555 9 C -0.076 4.076 10 C -0.150 4.150 11 C -0.057 4.057 12 C -0.161 4.161 13 C -0.135 4.135 14 C -0.100 4.100 15 C -0.106 4.106 16 N -0.690 5.690 17 C 0.058 3.942 18 C 0.439 3.561 19 O -0.594 6.594 20 N -0.577 5.577 21 C -0.322 4.322 22 H 0.074 0.926 23 C -0.012 4.012 24 N -0.922 5.922 25 Si 0.987 3.013 26 H -0.270 1.270 27 H -0.270 1.270 28 H -0.278 1.278 29 H 0.048 0.952 30 H 0.089 0.911 31 H 0.044 0.956 32 H 0.125 0.875 33 H 0.064 0.936 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.060 0.940 38 H 0.100 0.900 39 H 0.085 0.915 40 H 0.068 0.932 41 H 0.106 0.894 42 H 0.088 0.912 43 H 0.058 0.942 44 H 0.067 0.933 45 H 0.051 0.949 46 H 0.097 0.903 47 H 0.097 0.903 48 H 0.357 0.643 49 H 0.054 0.946 50 H 0.096 0.904 51 H 0.393 0.607 52 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.138 3.760 -23.445 24.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.050 4.050 3 H 0.076 0.924 4 C -0.011 4.011 5 N -0.357 5.357 6 C -0.090 4.090 7 C 0.298 3.702 8 O -0.432 6.432 9 C -0.080 4.080 10 C -0.206 4.206 11 C -0.094 4.094 12 C -0.179 4.179 13 C -0.153 4.153 14 C -0.137 4.137 15 C -0.143 4.143 16 N -0.333 5.333 17 C -0.075 4.075 18 C 0.226 3.774 19 O -0.478 6.478 20 N -0.215 5.215 21 C -0.452 4.452 22 H 0.092 0.908 23 C -0.212 4.212 24 N -0.563 5.563 25 Si 0.811 3.189 26 H -0.196 1.196 27 H -0.194 1.194 28 H -0.203 1.203 29 H 0.067 0.933 30 H 0.108 0.892 31 H 0.063 0.937 32 H 0.143 0.857 33 H 0.082 0.918 34 H 0.106 0.894 35 H 0.107 0.893 36 H 0.106 0.894 37 H 0.079 0.921 38 H 0.118 0.882 39 H 0.104 0.896 40 H 0.086 0.914 41 H 0.124 0.876 42 H 0.106 0.894 43 H 0.077 0.923 44 H 0.084 0.916 45 H 0.069 0.931 46 H 0.115 0.885 47 H 0.115 0.885 48 H 0.186 0.814 49 H 0.072 0.928 50 H 0.114 0.886 51 H 0.226 0.774 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 5.381 2.344 -22.983 23.721 hybrid contribution 0.252 0.264 1.676 1.715 sum 5.633 2.608 -21.308 22.193 Atomic orbital electron populations 1.21733 0.93270 1.01795 1.02410 1.22149 0.97072 0.96332 0.89456 0.92424 1.21777 0.79598 1.01849 0.97863 1.47996 1.06939 1.21832 1.58898 1.22739 0.96158 0.90115 0.99998 1.21109 0.91372 0.81503 0.76251 1.90789 1.65549 1.39478 1.47391 1.20911 0.90345 0.97599 0.99107 1.22323 1.01707 1.04808 0.91812 1.20348 1.01932 0.95150 0.92007 1.21880 1.02074 0.97492 0.96465 1.21621 0.99469 0.95619 0.98599 1.20629 1.00728 0.94207 0.98185 1.21939 1.01098 0.98879 0.92365 1.60368 1.37141 1.32067 1.03772 1.21621 1.01589 0.93843 0.90405 1.20695 0.83305 0.88297 0.85125 1.90568 1.54820 1.17334 1.85116 1.41881 1.59170 1.12330 1.08135 1.19546 1.41570 0.95588 0.88483 0.90822 1.25928 0.97557 0.96593 1.01078 1.69674 1.49143 1.09565 1.27964 0.85018 0.78565 0.77895 0.77402 1.19576 1.19425 1.20305 0.93317 0.89192 0.93677 0.85689 0.91778 0.89357 0.89346 0.89411 0.92129 0.88178 0.89621 0.91383 0.87565 0.89421 0.92331 0.91553 0.93069 0.88486 0.88461 0.81369 0.92789 0.88633 0.77369 0.91453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.10 9.41 71.98 0.68 -2.43 16 2 C 0.06 1.56 2.95 44.92 0.13 1.69 16 3 H 0.06 1.28 7.80 -2.39 -0.02 1.27 16 4 C 0.11 2.46 5.18 86.38 0.45 2.91 16 5 N -0.62 -13.37 2.66 -846.77 -2.25 -15.62 16 6 C 0.05 0.57 8.54 127.77 1.09 1.66 16 7 C 0.51 14.65 3.63 87.65 0.32 14.97 16 8 O -0.56 -22.19 13.24 -3.02 -0.04 -22.23 16 9 C -0.08 -1.71 0.50 -52.79 -0.03 -1.74 16 10 C -0.15 -1.85 7.48 71.98 0.54 -1.31 16 11 C -0.06 -1.48 4.54 29.66 0.13 -1.35 16 12 C -0.16 -5.74 8.78 27.04 0.24 -5.50 16 13 C -0.13 -5.59 8.22 27.04 0.22 -5.37 16 14 C -0.10 -3.62 4.98 29.66 0.15 -3.47 16 15 C -0.11 -2.45 4.73 30.74 0.15 -2.31 16 16 N -0.69 -25.81 5.85 -495.56 -2.90 -28.71 16 17 C 0.06 2.26 5.31 85.56 0.45 2.71 16 18 C 0.44 22.19 6.94 87.66 0.61 22.80 16 19 O -0.59 -34.35 12.81 -3.04 -0.04 -34.39 16 20 N -0.58 -30.89 5.29 -307.00 -1.62 -32.52 16 21 C -0.32 -18.94 9.68 84.04 0.81 -18.13 16 22 H 0.07 4.67 7.16 -2.91 -0.02 4.65 16 23 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 24 N -0.92 -51.07 13.05 21.66 0.28 -50.78 16 25 Si 0.99 44.76 29.55 68.60 2.03 46.79 16 26 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 27 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 28 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 29 H 0.05 1.21 7.45 -2.39 -0.02 1.19 16 30 H 0.09 1.39 8.14 -2.39 -0.02 1.38 16 31 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.13 1.61 8.07 -2.39 -0.02 1.59 16 33 H 0.06 1.80 7.39 -2.39 -0.02 1.79 16 34 H 0.09 0.57 7.07 -2.38 -0.02 0.55 16 35 H 0.09 0.70 8.03 -2.39 -0.02 0.68 16 36 H 0.09 0.94 3.15 -2.39 -0.01 0.93 16 37 H 0.06 0.78 8.03 -2.39 -0.02 0.76 16 38 H 0.10 0.74 4.57 -2.39 -0.01 0.73 16 39 H 0.08 0.79 7.87 -2.39 -0.02 0.77 16 40 H 0.07 1.84 7.91 -2.39 -0.02 1.82 16 41 H 0.11 2.04 7.92 -2.39 -0.02 2.02 16 42 H 0.09 3.17 8.06 -2.91 -0.02 3.14 16 43 H 0.06 2.97 7.39 -2.91 -0.02 2.95 16 44 H 0.07 2.61 2.48 -2.39 -0.01 2.60 16 45 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 46 H 0.10 1.90 8.12 -2.39 -0.02 1.88 16 47 H 0.10 1.71 5.35 -2.39 -0.01 1.70 16 48 H 0.36 13.84 1.74 -89.70 -0.16 13.68 16 49 H 0.05 1.87 8.06 -2.38 -0.02 1.85 16 50 H 0.10 3.45 7.44 -2.39 -0.02 3.43 16 51 H 0.39 20.13 7.90 -92.71 -0.73 19.40 16 52 H 0.28 14.32 8.31 -92.71 -0.77 13.55 16 Total: -1.00 -81.07 381.83 1.93 -79.14 By element: Atomic # 1 Polarization: 53.31 SS G_CDS: 0.06 Total: 53.37 kcal Atomic # 6 Polarization: -1.47 SS G_CDS: 6.41 Total: 4.94 kcal Atomic # 7 Polarization: -121.14 SS G_CDS: -6.49 Total: -127.63 kcal Atomic # 8 Polarization: -56.53 SS G_CDS: -0.08 Total: -56.61 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -81.07 1.93 -79.14 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571389685.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.151 kcal (2) G-P(sol) polarization free energy of solvation -81.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds