Wall clock time and date at job start Tue Mar 31 2020 20:53:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.47249 * 2 1 4 4 C 1.52996 * 109.47328 * 120.00044 * 2 1 3 5 5 N 1.46503 * 109.47287 * 177.43656 * 4 2 1 6 6 C 1.46507 * 119.99947 * 263.74553 * 5 4 2 7 7 C 1.34770 * 119.99960 * 83.74076 * 5 4 2 8 8 O 1.21283 * 120.00075 * 354.75431 * 7 5 4 9 9 C 1.50702 * 120.00042 * 174.75314 * 7 5 4 10 10 H 1.08999 * 110.05063 * 22.99184 * 9 7 5 11 11 C 1.54383 * 110.06774 * 261.50451 * 9 7 5 12 12 C 1.55011 * 104.17975 * 217.23710 * 11 9 7 13 13 C 1.54988 * 102.85431 * 37.66707 * 12 11 9 14 14 C 1.53478 * 110.06958 * 144.48144 * 9 7 5 15 15 C 1.52555 * 121.08516 * 335.17461 * 14 9 7 16 16 C 1.52571 * 121.05145 * 263.45985 * 14 9 7 17 17 N 1.46899 * 109.46949 * 240.00313 * 2 1 3 18 18 C 1.46904 * 111.00163 * 81.37037 * 17 2 1 19 19 C 1.50702 * 109.47095 * 180.02562 * 18 17 2 20 20 O 1.21298 * 119.99897 * 359.97438 * 19 18 17 21 21 N 1.34774 * 120.00257 * 180.02562 * 19 18 17 22 22 C 1.37088 * 120.00522 * 179.97438 * 21 19 18 23 23 H 1.08002 * 120.00063 * 0.02562 * 22 21 19 24 24 C 1.38955 * 120.00310 * 179.72263 * 22 21 19 25 25 N 1.31408 * 119.99984 * 0.27313 * 24 22 21 26 26 Si 1.86804 * 120.00130 * 180.27815 * 24 22 21 27 27 H 1.48497 * 109.47150 * 359.97438 * 26 24 22 28 28 H 1.48492 * 109.47248 * 119.99823 * 26 24 22 29 29 H 1.48505 * 109.46817 * 239.99798 * 26 24 22 30 30 H 1.09003 * 109.46953 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46649 * 299.99677 * 1 2 3 32 32 H 1.08994 * 109.47013 * 59.99982 * 1 2 3 33 33 H 1.08994 * 109.47342 * 297.43844 * 4 2 1 34 34 H 1.09003 * 109.47095 * 57.43810 * 4 2 1 35 35 H 1.08995 * 109.47103 * 95.54398 * 6 5 4 36 36 H 1.08998 * 109.46848 * 215.54356 * 6 5 4 37 37 H 1.08997 * 109.46813 * 335.53932 * 6 5 4 38 38 H 1.09004 * 110.48456 * 335.88600 * 11 9 7 39 39 H 1.09002 * 110.48797 * 98.51750 * 11 9 7 40 40 H 1.09002 * 110.70326 * 279.33310 * 12 11 9 41 41 H 1.09002 * 110.90935 * 156.09465 * 12 11 9 42 42 H 1.08999 * 110.51262 * 203.81762 * 13 12 11 43 43 H 1.08997 * 110.62928 * 81.15990 * 13 12 11 44 44 H 1.08997 * 117.50638 * 357.02942 * 15 14 9 45 45 H 1.08993 * 117.51153 * 142.11199 * 15 14 9 46 46 H 1.08998 * 117.51212 * 217.93376 * 16 14 9 47 47 H 1.08996 * 117.51365 * 2.99037 * 16 14 9 48 48 H 1.00903 * 111.00114 * 205.32502 * 17 2 1 49 49 H 1.08994 * 109.47017 * 60.00362 * 18 17 2 50 50 H 1.09001 * 109.46589 * 299.99432 * 18 17 2 51 51 H 0.97001 * 119.99476 * 359.97438 * 21 19 18 52 52 H 0.97000 * 120.00473 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 3.5038 -0.7750 1.2187 6 6 4.1825 -1.9697 0.7104 7 6 4.2259 0.2747 1.6581 8 8 3.6673 1.2990 1.9893 9 6 5.7276 0.1757 1.7378 10 1 6.0880 -0.5953 1.0569 11 6 6.1610 -0.1493 3.1835 12 6 7.4630 0.6681 3.3824 13 6 7.1640 1.9838 2.6196 14 6 6.3639 1.5276 1.3870 15 6 5.6306 2.5401 0.5126 16 6 6.8692 1.8173 -0.0232 17 7 2.0197 -0.6924 -1.1995 18 6 2.0011 0.1994 -2.3667 19 6 2.5084 -0.5443 -3.5753 20 8 2.8520 -1.7032 -3.4741 21 7 2.5812 0.0784 -4.7683 22 6 3.0430 -0.5979 -5.8676 23 1 3.3482 -1.6300 -5.7778 24 6 3.1127 0.0424 -7.0988 25 7 2.7408 1.2980 -7.2083 26 14 3.7347 -0.8816 -8.5984 27 1 4.0884 -2.2711 -8.2121 28 1 2.6739 -0.9108 -9.6371 29 1 4.9371 -0.1971 -9.1380 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3632 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.7148 -0.1816 2.1386 34 1 1.6397 -1.7348 1.2724 35 1 4.4338 -1.8255 -0.3403 36 1 5.0948 -2.1401 1.2821 37 1 3.5240 -2.8323 0.8116 38 1 5.3974 0.1717 3.8920 39 1 6.3589 -1.2157 3.2918 40 1 8.3143 0.1505 2.9404 41 1 7.6401 0.8665 4.4395 42 1 8.0919 2.4679 2.3150 43 1 6.5671 2.6571 3.2347 44 1 4.6621 2.2471 0.1073 45 1 5.7342 3.5945 0.7683 46 1 7.7876 2.3963 -0.1199 47 1 6.7160 1.0487 -0.7807 48 1 2.9430 -1.0700 -1.0475 49 1 2.6402 1.0614 -2.1755 50 1 0.9810 0.5368 -2.5499 51 1 2.3067 1.0053 -4.8490 52 1 2.7890 1.7450 -8.0678 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571393318.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:53:03 Heat of formation + Delta-G solvation = -48.974984 kcal Electronic energy + Delta-G solvation = -30807.337749 eV Core-core repulsion = 26807.281916 eV Total energy + Delta-G solvation = -4000.055833 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.82448 -38.74706 -38.09016 -36.62639 -34.91175 -34.27390 -33.85895 -31.39560 -31.00607 -29.62514 -27.39289 -26.64587 -26.18721 -25.31200 -23.89518 -22.47734 -21.53009 -20.72401 -19.88748 -19.23911 -18.30522 -17.88520 -17.35121 -16.48495 -16.29272 -15.57982 -15.52246 -15.24193 -15.20737 -14.52647 -14.43607 -14.34193 -13.85531 -13.65701 -13.44036 -13.12415 -12.90369 -12.79044 -12.71743 -12.69172 -12.41815 -11.92356 -11.83079 -11.73657 -11.66223 -11.61821 -11.43684 -11.36702 -11.32702 -11.10553 -11.07238 -10.94491 -10.79191 -10.34491 -10.32082 -10.22005 -9.97363 -9.52600 -9.51338 -8.74603 -8.41969 -8.02841 -7.94657 -6.40921 -3.81788 2.52388 2.84773 3.16342 3.26769 3.33807 3.70011 3.91956 4.10107 4.11694 4.34308 4.39312 4.51667 4.71478 4.81437 4.91370 4.93910 4.98159 5.01089 5.11543 5.13799 5.25140 5.27883 5.36161 5.37014 5.40304 5.53451 5.56348 5.59525 5.66388 5.67515 5.68845 5.70491 5.73943 5.81349 5.82986 5.89267 5.97036 6.02189 6.04112 6.04524 6.09770 6.16963 6.24838 6.31668 6.49483 7.21605 7.31918 7.55703 7.73852 8.07260 8.10635 8.62034 9.18432 9.55413 10.06615 10.76888 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.011938 B = 0.003044 C = 0.002684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2344.818546 B = 9194.976136 C =10428.556803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.065 3.935 3 H 0.047 0.953 4 C 0.119 3.881 5 N -0.620 5.620 6 C 0.071 3.929 7 C 0.521 3.479 8 O -0.528 6.528 9 C -0.081 4.081 10 H 0.095 0.905 11 C -0.105 4.105 12 C -0.119 4.119 13 C -0.086 4.086 14 C -0.116 4.116 15 C -0.149 4.149 16 C -0.171 4.171 17 N -0.663 5.663 18 C 0.050 3.950 19 C 0.442 3.558 20 O -0.585 6.585 21 N -0.563 5.563 22 C -0.298 4.298 23 H 0.103 0.897 24 C 0.022 3.978 25 N -0.901 5.901 26 Si 0.929 3.071 27 H -0.268 1.268 28 H -0.281 1.281 29 H -0.282 1.282 30 H 0.063 0.937 31 H 0.054 0.946 32 H 0.058 0.942 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.065 0.935 36 H 0.070 0.930 37 H 0.081 0.919 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.066 0.934 43 H 0.071 0.929 44 H 0.094 0.906 45 H 0.093 0.907 46 H 0.096 0.904 47 H 0.095 0.905 48 H 0.346 0.654 49 H 0.039 0.961 50 H 0.085 0.915 51 H 0.392 0.608 52 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.832 -0.238 21.407 22.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.046 4.046 3 H 0.065 0.935 4 C -0.004 4.004 5 N -0.354 5.354 6 C -0.072 4.072 7 C 0.309 3.691 8 O -0.404 6.404 9 C -0.103 4.103 10 H 0.113 0.887 11 C -0.143 4.143 12 C -0.157 4.157 13 C -0.123 4.123 14 C -0.117 4.117 15 C -0.186 4.186 16 C -0.208 4.208 17 N -0.298 5.298 18 C -0.083 4.083 19 C 0.228 3.772 20 O -0.469 6.469 21 N -0.200 5.200 22 C -0.428 4.428 23 H 0.121 0.879 24 C -0.180 4.180 25 N -0.542 5.542 26 Si 0.756 3.244 27 H -0.192 1.192 28 H -0.207 1.207 29 H -0.208 1.208 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.101 0.899 34 H 0.105 0.895 35 H 0.084 0.916 36 H 0.089 0.911 37 H 0.099 0.901 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.089 0.911 41 H 0.088 0.912 42 H 0.085 0.915 43 H 0.090 0.910 44 H 0.112 0.888 45 H 0.112 0.888 46 H 0.114 0.886 47 H 0.113 0.887 48 H 0.168 0.832 49 H 0.057 0.943 50 H 0.103 0.897 51 H 0.225 0.775 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.160 -0.652 21.340 21.964 hybrid contribution 0.754 0.732 -0.955 1.420 sum 5.913 0.080 20.385 21.226 Atomic orbital electron populations 1.21730 0.94056 1.02416 1.01378 1.21916 0.96163 0.96614 0.89935 0.93541 1.21717 0.78689 1.01958 0.98035 1.47991 1.06823 1.16922 1.63642 1.21999 0.98155 0.87344 0.99678 1.20590 0.89442 0.82693 0.76417 1.90682 1.72612 1.28725 1.48365 1.21504 0.91411 0.97919 0.99433 0.88700 1.22268 0.97966 1.00276 0.93832 1.22461 0.97079 0.95908 1.00232 1.21857 0.98747 0.97201 0.94483 1.21420 1.02592 0.95305 0.92352 1.22858 0.96308 0.97346 1.02066 1.23117 0.98774 1.03729 0.95218 1.60280 1.32476 1.35255 1.01816 1.21706 1.01418 0.94006 0.91138 1.19806 0.84993 0.88079 0.84336 1.90500 1.53972 1.17332 1.85144 1.41872 1.57050 1.14020 1.07054 1.19741 1.39265 0.97930 0.85870 0.87896 1.25267 0.97637 0.95869 0.99200 1.69622 1.47969 1.10419 1.26225 0.85809 0.78247 0.79583 0.80757 1.19222 1.20744 1.20773 0.91833 0.92717 0.92323 0.89905 0.89487 0.91606 0.91101 0.90058 0.91013 0.90903 0.91108 0.91196 0.91488 0.90996 0.88783 0.88830 0.88592 0.88673 0.83164 0.94279 0.89652 0.77483 0.91925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 9.37 37.16 0.35 -1.34 16 2 C 0.06 0.90 2.87 -67.71 -0.19 0.71 16 3 H 0.05 0.73 7.69 -51.93 -0.40 0.33 16 4 C 0.12 1.39 5.02 -4.04 -0.02 1.37 16 5 N -0.62 -7.20 2.48 -181.57 -0.45 -7.65 16 6 C 0.07 0.70 8.82 59.85 0.53 1.22 16 7 C 0.52 6.66 5.73 -10.99 -0.06 6.59 16 8 O -0.53 -8.31 14.50 5.55 0.08 -8.23 16 9 C -0.08 -0.86 2.45 -90.80 -0.22 -1.08 16 10 H 0.09 0.92 6.18 -51.93 -0.32 0.60 16 11 C -0.11 -0.90 6.37 -24.94 -0.16 -1.05 16 12 C -0.12 -0.91 6.91 -24.62 -0.17 -1.08 16 13 C -0.09 -0.78 6.58 -25.23 -0.17 -0.95 16 14 C -0.12 -1.28 2.06 -154.25 -0.32 -1.60 16 15 C -0.15 -1.90 8.94 -26.91 -0.24 -2.14 16 16 C -0.17 -1.94 10.23 -26.90 -0.28 -2.22 16 17 N -0.66 -11.14 5.92 -107.99 -0.64 -11.78 16 18 C 0.05 0.94 5.97 -4.97 -0.03 0.91 16 19 C 0.44 10.64 7.82 -10.99 -0.09 10.55 16 20 O -0.59 -15.82 15.78 5.54 0.09 -15.73 16 21 N -0.56 -14.53 5.29 -10.96 -0.06 -14.59 16 22 C -0.30 -8.38 9.68 -14.94 -0.14 -8.53 16 23 H 0.10 3.02 7.16 -52.49 -0.38 2.65 16 24 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 25 N -0.90 -24.77 13.05 55.50 0.72 -24.04 16 26 Si 0.93 21.12 29.55 -169.99 -5.02 16.10 16 27 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 28 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 29 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.76 7.23 -51.93 -0.38 0.39 16 33 H 0.08 0.97 7.70 -51.93 -0.40 0.57 16 34 H 0.09 0.90 7.78 -51.93 -0.40 0.50 16 35 H 0.07 0.77 6.79 -51.93 -0.35 0.42 16 36 H 0.07 0.53 6.48 -51.93 -0.34 0.19 16 37 H 0.08 0.71 7.78 -51.93 -0.40 0.31 16 38 H 0.07 0.68 7.85 -51.93 -0.41 0.28 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.07 0.55 8.11 -51.93 -0.42 0.13 16 43 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.09 1.43 6.81 -51.93 -0.35 1.07 16 45 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 46 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 47 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 48 H 0.35 5.90 4.87 -39.29 -0.19 5.71 16 49 H 0.04 0.71 8.06 -51.93 -0.42 0.29 16 50 H 0.09 1.51 7.20 -51.93 -0.37 1.14 16 51 H 0.39 9.77 7.90 -40.82 -0.32 9.45 16 52 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 409.40 15.07 6.17 6.17 Total: -1.00 -32.53 409.40 -9.22 -41.75 By element: Atomic # 1 Polarization: 24.93 SS G_CDS: -8.80 Total: 16.13 kcal Atomic # 6 Polarization: 3.18 SS G_CDS: -1.31 Total: 1.87 kcal Atomic # 7 Polarization: -57.63 SS G_CDS: -0.42 Total: -58.05 kcal Atomic # 8 Polarization: -24.13 SS G_CDS: 0.17 Total: -23.96 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -32.53 -9.22 -41.75 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571393318.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.228 kcal (2) G-P(sol) polarization free energy of solvation -32.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds