Wall clock time and date at job start Tue Mar 31 2020 20:53:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.47249 * 2 1 4 4 C 1.52996 * 109.47328 * 120.00044 * 2 1 3 5 5 N 1.46503 * 109.47287 * 177.43656 * 4 2 1 6 6 C 1.46507 * 119.99947 * 263.74553 * 5 4 2 7 7 C 1.34770 * 119.99960 * 83.74076 * 5 4 2 8 8 O 1.21283 * 120.00075 * 354.75431 * 7 5 4 9 9 C 1.50702 * 120.00042 * 174.75314 * 7 5 4 10 10 H 1.08999 * 110.05063 * 22.99184 * 9 7 5 11 11 C 1.54383 * 110.06774 * 261.50451 * 9 7 5 12 12 C 1.55011 * 104.17975 * 217.23710 * 11 9 7 13 13 C 1.54988 * 102.85431 * 37.66707 * 12 11 9 14 14 C 1.53478 * 110.06958 * 144.48144 * 9 7 5 15 15 C 1.52555 * 121.08516 * 335.17461 * 14 9 7 16 16 C 1.52571 * 121.05145 * 263.45985 * 14 9 7 17 17 N 1.46899 * 109.46949 * 240.00313 * 2 1 3 18 18 C 1.46904 * 111.00163 * 81.37037 * 17 2 1 19 19 C 1.50702 * 109.47095 * 180.02562 * 18 17 2 20 20 O 1.21298 * 119.99897 * 359.97438 * 19 18 17 21 21 N 1.34774 * 120.00257 * 180.02562 * 19 18 17 22 22 C 1.37088 * 120.00522 * 179.97438 * 21 19 18 23 23 H 1.08002 * 120.00063 * 0.02562 * 22 21 19 24 24 C 1.38955 * 120.00310 * 179.72263 * 22 21 19 25 25 N 1.31408 * 119.99984 * 0.27313 * 24 22 21 26 26 Si 1.86804 * 120.00130 * 180.27815 * 24 22 21 27 27 H 1.48497 * 109.47150 * 359.97438 * 26 24 22 28 28 H 1.48492 * 109.47248 * 119.99823 * 26 24 22 29 29 H 1.48505 * 109.46817 * 239.99798 * 26 24 22 30 30 H 1.09003 * 109.46953 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46649 * 299.99677 * 1 2 3 32 32 H 1.08994 * 109.47013 * 59.99982 * 1 2 3 33 33 H 1.08994 * 109.47342 * 297.43844 * 4 2 1 34 34 H 1.09003 * 109.47095 * 57.43810 * 4 2 1 35 35 H 1.08995 * 109.47103 * 95.54398 * 6 5 4 36 36 H 1.08998 * 109.46848 * 215.54356 * 6 5 4 37 37 H 1.08997 * 109.46813 * 335.53932 * 6 5 4 38 38 H 1.09004 * 110.48456 * 335.88600 * 11 9 7 39 39 H 1.09002 * 110.48797 * 98.51750 * 11 9 7 40 40 H 1.09002 * 110.70326 * 279.33310 * 12 11 9 41 41 H 1.09002 * 110.90935 * 156.09465 * 12 11 9 42 42 H 1.08999 * 110.51262 * 203.81762 * 13 12 11 43 43 H 1.08997 * 110.62928 * 81.15990 * 13 12 11 44 44 H 1.08997 * 117.50638 * 357.02942 * 15 14 9 45 45 H 1.08993 * 117.51153 * 142.11199 * 15 14 9 46 46 H 1.08998 * 117.51212 * 217.93376 * 16 14 9 47 47 H 1.08996 * 117.51365 * 2.99037 * 16 14 9 48 48 H 1.00903 * 111.00114 * 205.32502 * 17 2 1 49 49 H 1.08994 * 109.47017 * 60.00362 * 18 17 2 50 50 H 1.09001 * 109.46589 * 299.99432 * 18 17 2 51 51 H 0.97001 * 119.99476 * 359.97438 * 21 19 18 52 52 H 0.97000 * 120.00473 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 3.5038 -0.7750 1.2187 6 6 4.1825 -1.9697 0.7104 7 6 4.2259 0.2747 1.6581 8 8 3.6673 1.2990 1.9893 9 6 5.7276 0.1757 1.7378 10 1 6.0880 -0.5953 1.0569 11 6 6.1610 -0.1493 3.1835 12 6 7.4630 0.6681 3.3824 13 6 7.1640 1.9838 2.6196 14 6 6.3639 1.5276 1.3870 15 6 5.6306 2.5401 0.5126 16 6 6.8692 1.8173 -0.0232 17 7 2.0197 -0.6924 -1.1995 18 6 2.0011 0.1994 -2.3667 19 6 2.5084 -0.5443 -3.5753 20 8 2.8520 -1.7032 -3.4741 21 7 2.5812 0.0784 -4.7683 22 6 3.0430 -0.5979 -5.8676 23 1 3.3482 -1.6300 -5.7778 24 6 3.1127 0.0424 -7.0988 25 7 2.7408 1.2980 -7.2083 26 14 3.7347 -0.8816 -8.5984 27 1 4.0884 -2.2711 -8.2121 28 1 2.6739 -0.9108 -9.6371 29 1 4.9371 -0.1971 -9.1380 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3632 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.7148 -0.1816 2.1386 34 1 1.6397 -1.7348 1.2724 35 1 4.4338 -1.8255 -0.3403 36 1 5.0948 -2.1401 1.2821 37 1 3.5240 -2.8323 0.8116 38 1 5.3974 0.1717 3.8920 39 1 6.3589 -1.2157 3.2918 40 1 8.3143 0.1505 2.9404 41 1 7.6401 0.8665 4.4395 42 1 8.0919 2.4679 2.3150 43 1 6.5671 2.6571 3.2347 44 1 4.6621 2.2471 0.1073 45 1 5.7342 3.5945 0.7683 46 1 7.7876 2.3963 -0.1199 47 1 6.7160 1.0487 -0.7807 48 1 2.9430 -1.0700 -1.0475 49 1 2.6402 1.0614 -2.1755 50 1 0.9810 0.5368 -2.5499 51 1 2.3067 1.0053 -4.8490 52 1 2.7890 1.7450 -8.0678 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571393318.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:53:02 Heat of formation + Delta-G solvation = -69.827223 kcal Electronic energy + Delta-G solvation = -30808.241970 eV Core-core repulsion = 26807.281916 eV Total energy + Delta-G solvation = -4000.960054 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.76138 -40.28168 -39.39159 -37.85290 -36.14258 -35.79305 -35.07960 -33.32886 -32.41914 -30.47000 -28.31788 -28.17596 -27.14216 -26.39535 -25.58389 -23.45049 -22.38815 -21.64445 -21.17503 -20.83844 -19.94712 -19.22433 -18.35253 -17.88219 -17.39555 -17.09376 -16.55981 -16.43072 -16.36533 -16.06645 -15.83789 -15.63093 -15.28112 -15.03557 -14.46989 -14.25412 -14.18378 -13.86363 -13.67073 -13.54941 -13.51806 -13.48033 -13.35093 -12.92160 -12.85651 -12.77119 -12.62972 -12.50229 -12.42264 -12.40254 -12.11321 -12.02941 -11.95696 -11.84111 -11.62664 -11.53576 -11.21034 -10.90156 -10.48664 -10.38430 -10.04873 -9.72369 -9.44007 -8.48601 -5.98008 1.35475 1.40946 1.54671 1.55640 1.93838 1.99455 2.27174 2.78303 2.84867 3.17924 3.29901 3.44201 3.62427 3.64807 3.84526 3.90449 3.98188 4.11966 4.16994 4.23292 4.23653 4.27473 4.34698 4.38441 4.40729 4.47678 4.54678 4.59144 4.68218 4.70075 4.74133 4.75057 4.84982 4.87470 4.91459 4.95581 5.00591 5.02759 5.08122 5.14435 5.15683 5.26121 5.29429 5.38977 5.41739 5.52367 5.83385 6.03691 6.30480 6.38806 6.55741 7.09024 7.13230 7.51265 8.05254 8.69157 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.011938 B = 0.003044 C = 0.002684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2344.818546 B = 9194.976136 C =10428.556803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.068 3.932 3 H 0.025 0.975 4 C 0.121 3.879 5 N -0.619 5.619 6 C 0.069 3.931 7 C 0.516 3.484 8 O -0.564 6.564 9 C -0.084 4.084 10 H 0.105 0.895 11 C -0.101 4.101 12 C -0.113 4.113 13 C -0.087 4.087 14 C -0.111 4.111 15 C -0.170 4.170 16 C -0.166 4.166 17 N -0.666 5.666 18 C 0.064 3.936 19 C 0.441 3.559 20 O -0.616 6.616 21 N -0.572 5.572 22 C -0.332 4.332 23 H 0.082 0.918 24 C -0.014 4.014 25 N -0.922 5.922 26 Si 0.995 3.005 27 H -0.270 1.270 28 H -0.271 1.271 29 H -0.271 1.271 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.048 0.952 33 H 0.086 0.914 34 H 0.106 0.894 35 H 0.043 0.957 36 H 0.098 0.902 37 H 0.095 0.905 38 H 0.059 0.941 39 H 0.096 0.904 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.079 0.921 43 H 0.062 0.938 44 H 0.063 0.937 45 H 0.096 0.904 46 H 0.113 0.887 47 H 0.083 0.917 48 H 0.344 0.656 49 H 0.044 0.956 50 H 0.100 0.900 51 H 0.394 0.606 52 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.824 -1.144 22.365 23.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.043 4.043 3 H 0.043 0.957 4 C -0.002 4.002 5 N -0.352 5.352 6 C -0.073 4.073 7 C 0.305 3.695 8 O -0.442 6.442 9 C -0.106 4.106 10 H 0.123 0.877 11 C -0.139 4.139 12 C -0.150 4.150 13 C -0.124 4.124 14 C -0.112 4.112 15 C -0.207 4.207 16 C -0.202 4.202 17 N -0.301 5.301 18 C -0.069 4.069 19 C 0.228 3.772 20 O -0.503 6.503 21 N -0.209 5.209 22 C -0.462 4.462 23 H 0.100 0.900 24 C -0.214 4.214 25 N -0.563 5.563 26 Si 0.819 3.181 27 H -0.195 1.195 28 H -0.196 1.196 29 H -0.196 1.196 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.067 0.933 33 H 0.104 0.896 34 H 0.124 0.876 35 H 0.061 0.939 36 H 0.116 0.884 37 H 0.113 0.887 38 H 0.078 0.922 39 H 0.114 0.886 40 H 0.102 0.898 41 H 0.103 0.897 42 H 0.097 0.903 43 H 0.081 0.919 44 H 0.081 0.919 45 H 0.114 0.886 46 H 0.131 0.869 47 H 0.102 0.898 48 H 0.166 0.834 49 H 0.062 0.938 50 H 0.118 0.882 51 H 0.228 0.772 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.142 -1.556 22.309 23.191 hybrid contribution 0.402 1.040 -1.237 1.665 sum 6.544 -0.516 21.072 22.070 Atomic orbital electron populations 1.21711 0.92592 1.02926 1.01932 1.21981 0.97234 0.95413 0.89639 0.95713 1.21723 0.78989 1.02717 0.96778 1.48079 1.06866 1.17273 1.62988 1.22112 0.99610 0.86912 0.98652 1.21038 0.90461 0.82283 0.75709 1.90661 1.73441 1.30053 1.50093 1.21631 0.89709 0.97920 1.01291 0.87739 1.22297 0.98019 1.01904 0.91712 1.22474 0.96884 0.94601 1.01027 1.21906 0.98732 0.98195 0.93555 1.21611 1.01733 0.94995 0.92832 1.22744 0.95528 0.98095 1.04298 1.23125 0.98540 1.03195 0.95386 1.60346 1.32450 1.35122 1.02222 1.21534 1.01878 0.93658 0.89787 1.20630 0.83593 0.87868 0.85069 1.90466 1.55066 1.18916 1.85804 1.41942 1.57490 1.14083 1.07371 1.19728 1.41408 0.97601 0.87437 0.89999 1.26100 0.97123 0.96687 1.01470 1.69691 1.47894 1.11367 1.27303 0.84838 0.78139 0.78118 0.77046 1.19474 1.19646 1.19575 0.91272 0.90686 0.93298 0.89594 0.87581 0.93871 0.88373 0.88680 0.92208 0.88555 0.89771 0.89669 0.90265 0.91900 0.91885 0.88563 0.86883 0.89803 0.83437 0.93761 0.88219 0.77244 0.91285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.15 9.37 71.98 0.67 -2.47 16 2 C 0.07 1.87 2.87 44.92 0.13 2.00 16 3 H 0.02 0.80 7.69 -2.39 -0.02 0.78 16 4 C 0.12 2.73 5.02 86.38 0.43 3.16 16 5 N -0.62 -14.00 2.48 -846.76 -2.10 -16.10 16 6 C 0.07 1.27 8.82 127.77 1.13 2.40 16 7 C 0.52 13.16 5.73 87.66 0.50 13.66 16 8 O -0.56 -18.21 14.50 -3.04 -0.04 -18.26 16 9 C -0.08 -1.69 2.45 -10.91 -0.03 -1.72 16 10 H 0.10 1.87 6.18 -2.39 -0.01 1.86 16 11 C -0.10 -1.49 6.37 31.75 0.20 -1.29 16 12 C -0.11 -1.40 6.91 31.96 0.22 -1.18 16 13 C -0.09 -1.45 6.58 31.57 0.21 -1.25 16 14 C -0.11 -2.41 2.06 -52.02 -0.11 -2.51 16 15 C -0.17 -4.53 8.94 30.48 0.27 -4.26 16 16 C -0.17 -3.74 10.23 30.48 0.31 -3.43 16 17 N -0.67 -22.46 5.92 -495.58 -2.94 -25.39 16 18 C 0.06 2.46 5.97 85.56 0.51 2.97 16 19 C 0.44 21.73 7.82 87.66 0.69 22.42 16 20 O -0.62 -34.13 15.78 -3.09 -0.05 -34.18 16 21 N -0.57 -30.27 5.29 -306.98 -1.62 -31.89 16 22 C -0.33 -19.08 9.68 84.04 0.81 -18.27 16 23 H 0.08 4.97 7.16 -2.91 -0.02 4.95 16 24 C -0.01 -0.77 5.50 84.93 0.47 -0.30 16 25 N -0.92 -50.60 13.05 21.66 0.28 -50.32 16 26 Si 1.00 43.09 29.55 68.60 2.03 45.12 16 27 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 28 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 29 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 30 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.05 1.24 7.23 -2.39 -0.02 1.22 16 33 H 0.09 1.93 7.70 -2.39 -0.02 1.91 16 34 H 0.11 2.00 7.78 -2.39 -0.02 1.98 16 35 H 0.04 1.01 6.79 -2.39 -0.02 0.99 16 36 H 0.10 1.25 6.48 -2.39 -0.02 1.23 16 37 H 0.09 1.49 7.78 -2.39 -0.02 1.47 16 38 H 0.06 1.04 7.85 -2.38 -0.02 1.03 16 39 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.08 1.13 8.11 -2.39 -0.02 1.11 16 43 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.06 2.07 6.81 -2.39 -0.02 2.05 16 45 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 46 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 47 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 48 H 0.34 11.86 4.87 -89.69 -0.44 11.42 16 49 H 0.04 1.66 8.06 -2.39 -0.02 1.64 16 50 H 0.10 3.54 7.20 -2.39 -0.02 3.53 16 51 H 0.39 20.16 7.90 -92.71 -0.73 19.43 16 52 H 0.28 14.21 8.31 -92.71 -0.77 13.44 16 Total: -1.00 -71.50 409.40 1.74 -69.77 By element: Atomic # 1 Polarization: 51.56 SS G_CDS: -0.24 Total: 51.32 kcal Atomic # 6 Polarization: 3.52 SS G_CDS: 6.42 Total: 9.94 kcal Atomic # 7 Polarization: -117.33 SS G_CDS: -6.38 Total: -123.71 kcal Atomic # 8 Polarization: -52.34 SS G_CDS: -0.09 Total: -52.44 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Total: -71.50 1.74 -69.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571393318.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.061 kcal (2) G-P(sol) polarization free energy of solvation -71.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds