Wall clock time and date at job start Tue Mar 31 2020 20:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09007 * 109.47426 * 2 1 4 4 N 1.46506 * 109.47360 * 240.00073 * 2 1 3 5 5 C 1.34783 * 119.99378 * 84.99730 * 4 2 1 6 6 O 1.21275 * 120.00463 * 0.02562 * 5 4 2 7 7 C 1.50699 * 119.99545 * 180.02562 * 5 4 2 8 8 C 1.53782 * 113.61510 * 179.97438 * 7 5 4 9 9 C 1.53781 * 87.08260 * 220.02009 * 8 7 5 10 10 C 1.53786 * 87.17350 * 25.39213 * 9 8 7 11 11 C 1.52997 * 109.47412 * 120.00231 * 2 1 3 12 12 H 1.09011 * 109.50613 * 180.02562 * 11 2 1 13 13 C 1.53122 * 109.50299 * 60.00112 * 11 2 1 14 14 C 1.53117 * 109.15860 * 182.40640 * 13 11 2 15 15 C 1.53038 * 109.28056 * 57.65672 * 14 13 11 16 16 N 1.46850 * 109.52114 * 300.81385 * 15 14 13 17 17 C 1.46895 * 111.00036 * 185.83976 * 16 15 14 18 18 C 1.50703 * 109.47033 * 66.05173 * 17 16 15 19 19 O 1.21289 * 119.99827 * 359.97438 * 18 17 16 20 20 N 1.34774 * 119.99540 * 180.02562 * 18 17 16 21 21 C 1.37099 * 119.99670 * 180.02562 * 20 18 17 22 22 H 1.08006 * 120.00021 * 359.97438 * 21 20 18 23 23 C 1.38956 * 120.00414 * 180.02562 * 21 20 18 24 24 N 1.31402 * 120.00401 * 179.97438 * 23 21 20 25 25 Si 1.86798 * 119.99443 * 359.97438 * 23 21 20 26 26 H 1.48498 * 109.47447 * 90.00119 * 25 23 21 27 27 H 1.48500 * 109.47038 * 210.00516 * 25 23 21 28 28 H 1.48503 * 109.47371 * 329.99778 * 25 23 21 29 29 C 1.46847 * 111.19412 * 61.74295 * 16 15 14 30 30 H 1.08998 * 109.47289 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47274 * 299.99972 * 1 2 3 32 32 H 1.09003 * 109.47294 * 59.99812 * 1 2 3 33 33 H 0.96987 * 120.00260 * 265.00213 * 4 2 1 34 34 H 1.08997 * 112.90858 * 311.25548 * 7 5 4 35 35 H 1.09001 * 113.61250 * 105.46827 * 8 7 5 36 36 H 1.08996 * 113.68722 * 334.58141 * 8 7 5 37 37 H 1.09002 * 113.61445 * 139.98212 * 9 8 7 38 38 H 1.09002 * 113.61408 * 270.79943 * 9 8 7 39 39 H 1.08993 * 113.61491 * 89.15923 * 10 9 8 40 40 H 1.09000 * 113.61138 * 220.06261 * 10 9 8 41 41 H 1.08999 * 109.51721 * 302.30897 * 13 11 2 42 42 H 1.09000 * 109.52222 * 62.50148 * 13 11 2 43 43 H 1.09000 * 109.50458 * 177.59465 * 14 13 11 44 44 H 1.08996 * 109.50634 * 297.70956 * 14 13 11 45 45 H 1.08998 * 109.46536 * 60.83182 * 15 14 13 46 46 H 1.08996 * 109.46182 * 180.80771 * 15 14 13 47 47 H 1.09000 * 109.46992 * 186.04784 * 17 16 15 48 48 H 1.08995 * 109.47418 * 306.04889 * 17 16 15 49 49 H 0.96998 * 120.00954 * 359.97438 * 20 18 17 50 50 H 0.96996 * 120.00317 * 179.97438 * 24 23 21 51 51 H 1.09003 * 109.46355 * 178.23896 * 29 16 15 52 52 H 1.09003 * 109.46293 * 58.27235 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0181 -2.3572 6 8 1.8589 1.1587 -2.4115 7 6 2.6488 -0.7286 -3.5878 8 6 2.7378 0.1761 -4.8282 9 6 2.2033 -1.0162 -5.6391 10 6 1.5568 -1.5149 -4.3359 11 6 2.0400 -0.7213 1.2492 12 1 3.1301 -0.7212 1.2499 13 6 1.5300 -2.1651 1.2498 14 6 1.9946 -2.8615 2.5319 15 6 1.4821 -2.0816 3.7448 16 7 1.9981 -0.7075 3.6984 17 6 1.6406 0.0305 4.9172 18 6 2.3492 -0.5788 6.0994 19 8 3.0798 -1.5341 5.9422 20 7 2.1703 -0.0627 7.3315 21 6 2.8153 -0.6166 8.4070 22 1 3.4666 -1.4668 8.2670 23 6 2.6305 -0.0849 9.6775 24 7 3.2484 -0.6162 10.7083 25 14 1.5037 1.3850 9.9198 26 1 0.1222 0.9109 10.1879 27 1 1.9826 2.1914 11.0712 28 1 1.5105 2.2216 8.6928 29 6 1.5263 -0.0034 2.4993 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 2.2490 -1.6317 -1.1527 34 1 3.5534 -1.3082 -3.4038 35 1 3.7573 0.4599 -5.0893 36 1 2.0559 1.0259 -4.8002 37 1 1.4807 -0.7346 -6.4050 38 1 2.9865 -1.6733 -6.0173 39 1 0.5508 -1.1288 -4.1719 40 1 1.6243 -2.5944 -4.2002 41 1 0.4408 -2.1666 1.2087 42 1 1.9290 -2.6927 0.3836 43 1 1.5989 -3.8768 2.5585 44 1 3.0839 -2.8943 2.5540 45 1 0.3924 -2.0610 3.7294 46 1 1.8233 -2.5668 4.6592 47 1 1.9404 1.0731 4.8117 48 1 0.5631 -0.0238 5.0719 49 1 1.5857 0.7011 7.4574 50 1 3.1197 -0.2448 11.5951 51 1 1.8994 1.0208 2.5091 52 1 0.4364 0.0074 2.4897 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001661978442.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:51 Heat of formation + Delta-G solvation = -53.701653 kcal Electronic energy + Delta-G solvation = -29658.520452 eV Core-core repulsion = 25658.259656 eV Total energy + Delta-G solvation = -4000.260796 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.74810 -39.61124 -38.33915 -37.55411 -35.74865 -33.96519 -32.95998 -31.94106 -31.61995 -28.97448 -27.65992 -27.08035 -26.05458 -24.69876 -24.29618 -22.86780 -21.69410 -20.80268 -19.75698 -19.36329 -19.14049 -18.26985 -17.75507 -16.52125 -15.99132 -15.85638 -15.48852 -15.15924 -15.08477 -14.91496 -14.79422 -14.49221 -14.13661 -13.76468 -13.41313 -13.27697 -13.22272 -13.03066 -12.88477 -12.80843 -12.55065 -12.41911 -12.29849 -12.06306 -11.83779 -11.60450 -11.52148 -11.47746 -11.13845 -11.00746 -10.97379 -10.83821 -10.61342 -10.56793 -10.40940 -10.24691 -9.97246 -9.89152 -9.52016 -9.31066 -8.53773 -8.17442 -7.91907 -6.30705 -3.81935 2.37942 2.90547 3.03200 3.06918 3.15409 3.74760 3.90322 4.08176 4.10704 4.15670 4.29947 4.38246 4.54493 4.59587 4.72165 4.78786 4.80704 5.06190 5.12369 5.13379 5.21486 5.22187 5.23318 5.34026 5.36014 5.42044 5.43622 5.49891 5.54315 5.55515 5.60012 5.65076 5.66378 5.70171 5.80849 5.84888 5.90630 5.93240 5.97625 5.98532 6.06761 6.17633 6.28336 6.42160 6.50176 7.21338 7.26312 7.37106 7.59462 8.00341 8.15234 8.61017 8.95916 9.43241 9.84468 10.82438 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.029669 B = 0.001929 C = 0.001878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.518962 B =14510.176153 C =14903.484736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.147 3.853 3 H 0.088 0.912 4 N -0.722 5.722 5 C 0.522 3.478 6 O -0.541 6.541 7 C -0.141 4.141 8 C -0.118 4.118 9 C -0.143 4.143 10 C -0.123 4.123 11 C -0.090 4.090 12 H 0.087 0.913 13 C -0.117 4.117 14 C -0.113 4.113 15 C 0.051 3.949 16 N -0.514 5.514 17 C 0.044 3.956 18 C 0.453 3.547 19 O -0.558 6.558 20 N -0.592 5.592 21 C -0.304 4.304 22 H 0.120 0.880 23 C 0.041 3.959 24 N -0.882 5.882 25 Si 0.879 3.121 26 H -0.271 1.271 27 H -0.277 1.277 28 H -0.269 1.269 29 C 0.062 3.938 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.057 0.943 33 H 0.400 0.600 34 H 0.112 0.888 35 H 0.071 0.929 36 H 0.094 0.906 37 H 0.071 0.929 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.075 0.925 41 H 0.064 0.936 42 H 0.057 0.943 43 H 0.064 0.936 44 H 0.073 0.927 45 H 0.021 0.979 46 H 0.103 0.897 47 H 0.089 0.911 48 H 0.048 0.952 49 H 0.370 0.630 50 H 0.273 0.727 51 H 0.074 0.926 52 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.701 -0.784 -29.117 29.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.042 3.958 3 H 0.106 0.894 4 N -0.374 5.374 5 C 0.309 3.691 6 O -0.418 6.418 7 C -0.162 4.162 8 C -0.156 4.156 9 C -0.180 4.180 10 C -0.161 4.161 11 C -0.109 4.109 12 H 0.105 0.895 13 C -0.155 4.155 14 C -0.150 4.150 15 C -0.076 4.076 16 N -0.238 5.238 17 C -0.088 4.088 18 C 0.239 3.761 19 O -0.440 6.440 20 N -0.231 5.231 21 C -0.433 4.433 22 H 0.137 0.863 23 C -0.162 4.162 24 N -0.522 5.522 25 Si 0.706 3.294 26 H -0.197 1.197 27 H -0.202 1.202 28 H -0.195 1.195 29 C -0.067 4.067 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.076 0.924 33 H 0.235 0.765 34 H 0.130 0.870 35 H 0.090 0.910 36 H 0.113 0.887 37 H 0.090 0.910 38 H 0.101 0.899 39 H 0.103 0.897 40 H 0.094 0.906 41 H 0.082 0.918 42 H 0.076 0.924 43 H 0.082 0.918 44 H 0.092 0.908 45 H 0.039 0.961 46 H 0.121 0.879 47 H 0.108 0.892 48 H 0.066 0.934 49 H 0.203 0.797 50 H 0.084 0.916 51 H 0.093 0.907 52 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -5.854 -0.609 -29.028 29.619 hybrid contribution -1.590 0.817 0.626 1.894 sum -7.444 0.208 -28.402 29.362 Atomic orbital electron populations 1.22280 0.95419 1.02280 1.02454 1.20930 0.94076 0.97284 0.83537 0.89359 1.46175 1.67422 1.14156 1.09641 1.20520 0.77220 0.87128 0.84249 1.90687 1.50154 1.16042 1.84907 1.22856 1.00872 0.99775 0.92713 1.22794 1.02501 0.97262 0.93022 1.22836 1.00542 0.98084 0.96552 1.22849 0.97789 0.99853 0.95626 1.21412 1.01784 0.95094 0.92619 0.89492 1.21722 1.00748 0.94915 0.98091 1.21530 1.02173 0.97965 0.93374 1.22272 0.95590 0.88979 1.00790 1.61427 1.60082 1.02136 1.00201 1.21865 0.97957 0.98521 0.90422 1.19646 0.86329 0.86842 0.83297 1.90523 1.40363 1.28766 1.84369 1.42220 1.43559 1.30252 1.07105 1.19423 1.24908 1.14959 0.83974 0.86282 1.25031 0.97758 0.98115 0.95255 1.69614 1.42099 1.41022 0.99453 0.86681 0.81349 0.82786 0.78629 1.19695 1.20187 1.19476 1.22109 0.97380 0.97671 0.89495 0.92126 0.91302 0.92421 0.76516 0.86967 0.91010 0.88715 0.90993 0.89855 0.89721 0.90634 0.91757 0.92449 0.91752 0.90829 0.96091 0.87874 0.89249 0.93431 0.79744 0.91639 0.90724 0.94574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.48 8.78 37.15 0.33 -1.15 16 2 C 0.15 1.38 2.41 -67.93 -0.16 1.21 16 3 H 0.09 0.99 7.58 -51.92 -0.39 0.60 16 4 N -0.72 -5.93 5.00 -53.81 -0.27 -6.20 16 5 C 0.52 5.09 7.33 -10.98 -0.08 5.01 16 6 O -0.54 -7.41 15.56 5.56 0.09 -7.32 16 7 C -0.14 -0.95 4.15 -90.86 -0.38 -1.33 16 8 C -0.12 -0.82 7.41 -25.92 -0.19 -1.01 16 9 C -0.14 -0.73 8.08 -25.92 -0.21 -0.94 16 10 C -0.12 -0.67 7.65 -25.82 -0.20 -0.87 16 11 C -0.09 -0.90 2.34 -90.54 -0.21 -1.11 16 12 H 0.09 0.99 8.14 -51.92 -0.42 0.56 16 13 C -0.12 -1.08 4.77 -26.61 -0.13 -1.21 16 14 C -0.11 -1.35 6.09 -26.65 -0.16 -1.51 16 15 C 0.05 0.77 5.11 -3.83 -0.02 0.75 16 16 N -0.51 -7.97 4.39 -236.12 -1.04 -9.00 16 17 C 0.04 0.73 5.45 -4.98 -0.03 0.70 16 18 C 0.45 10.17 7.46 -10.98 -0.08 10.09 16 19 O -0.56 -14.61 13.92 5.55 0.08 -14.54 16 20 N -0.59 -14.01 5.09 -10.96 -0.06 -14.07 16 21 C -0.30 -8.55 10.16 -14.93 -0.15 -8.70 16 22 H 0.12 3.82 7.39 -52.48 -0.39 3.44 16 23 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 24 N -0.88 -25.71 13.96 55.50 0.77 -24.94 16 25 Si 0.88 19.36 27.74 -169.99 -4.71 14.64 16 26 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 27 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 28 H -0.27 -5.42 6.52 56.52 0.37 -5.05 16 29 C 0.06 0.73 4.41 -3.83 -0.02 0.71 16 30 H 0.06 0.49 6.38 -51.93 -0.33 0.16 16 31 H 0.07 0.60 6.41 -51.93 -0.33 0.26 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.40 2.46 6.91 -40.82 -0.28 2.17 16 34 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.09 0.83 7.44 -51.93 -0.39 0.44 16 37 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 38 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.08 0.53 8.10 -51.93 -0.42 0.11 16 40 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.06 0.57 6.32 -51.93 -0.33 0.25 16 42 H 0.06 0.42 6.60 -51.93 -0.34 0.07 16 43 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 45 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 46 H 0.10 1.96 5.80 -51.93 -0.30 1.66 16 47 H 0.09 1.32 7.98 -51.93 -0.41 0.90 16 48 H 0.05 0.70 8.12 -51.93 -0.42 0.28 16 49 H 0.37 7.72 5.76 -40.82 -0.24 7.48 16 50 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 51 H 0.07 0.85 8.01 -51.93 -0.42 0.44 16 52 H 0.04 0.40 6.38 -51.93 -0.33 0.06 16 LS Contribution 398.39 15.07 6.00 6.00 Total: -1.00 -33.64 398.39 -9.64 -43.28 By element: Atomic # 1 Polarization: 19.19 SS G_CDS: -8.72 Total: 10.46 kcal Atomic # 6 Polarization: 3.47 SS G_CDS: -1.79 Total: 1.68 kcal Atomic # 7 Polarization: -53.62 SS G_CDS: -0.59 Total: -54.21 kcal Atomic # 8 Polarization: -22.03 SS G_CDS: 0.16 Total: -21.86 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -4.71 Total: 14.64 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.64 -9.64 -43.28 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661978442.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.419 kcal (2) G-P(sol) polarization free energy of solvation -33.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds