Wall clock time and date at job start Tue Mar 31 2020 20:23:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.47183 * 2 1 4 4 N 1.46495 * 109.47211 * 120.00405 * 2 1 3 5 5 C 1.34784 * 120.00026 * 274.99835 * 4 2 1 6 6 O 1.21281 * 119.99890 * 0.02562 * 5 4 2 7 7 C 1.50697 * 119.99920 * 179.97438 * 5 4 2 8 8 N 1.46504 * 109.46941 * 180.02562 * 7 5 4 9 9 C 1.46499 * 120.00060 * 270.00028 * 8 7 5 10 10 C 1.34774 * 119.99835 * 90.00246 * 8 7 5 11 11 O 1.21279 * 120.00087 * 0.02562 * 10 8 7 12 12 C 1.50699 * 119.99810 * 180.02562 * 10 8 7 13 13 C 1.53001 * 117.50245 * 111.25445 * 12 10 8 14 14 C 1.52998 * 117.49957 * 179.91531 * 12 10 8 15 15 C 1.52997 * 109.47075 * 240.00427 * 2 1 3 16 16 H 1.08996 * 109.49902 * 299.93053 * 15 2 1 17 17 C 1.53035 * 109.49924 * 59.99978 * 15 2 1 18 18 C 1.53044 * 109.53870 * 181.31622 * 17 15 2 19 19 C 1.53194 * 109.31458 * 298.63353 * 18 17 15 20 20 N 1.46933 * 108.77242 * 54.63422 * 19 18 17 21 21 C 1.36938 * 120.62938 * 126.41421 * 20 19 18 22 22 H 1.08000 * 119.99916 * 207.67390 * 21 20 19 23 23 C 1.38807 * 120.00109 * 27.67425 * 21 20 19 24 24 N 1.31623 * 120.00056 * 17.35543 * 23 21 20 25 25 Si 1.86803 * 120.00383 * 197.35858 * 23 21 20 26 26 H 1.48495 * 109.47088 * 89.99530 * 25 23 21 27 27 H 1.48492 * 109.47335 * 210.00004 * 25 23 21 28 28 H 1.48507 * 109.46676 * 330.00030 * 25 23 21 29 29 C 1.46925 * 118.73913 * 306.39221 * 20 19 18 30 30 H 1.09002 * 109.47133 * 59.99400 * 1 2 3 31 31 H 1.08996 * 109.47119 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46782 * 299.99982 * 1 2 3 33 33 H 0.96998 * 120.00488 * 94.99479 * 4 2 1 34 34 H 1.09003 * 109.47475 * 60.00574 * 7 5 4 35 35 H 1.08997 * 109.47341 * 300.00344 * 7 5 4 36 36 H 1.08999 * 109.47606 * 270.00288 * 9 8 7 37 37 H 1.09004 * 109.47260 * 30.00350 * 9 8 7 38 38 H 1.09001 * 109.47094 * 150.00123 * 9 8 7 39 39 H 1.09003 * 115.55271 * 325.58158 * 12 10 8 40 40 H 1.09001 * 117.49725 * 215.00537 * 13 12 10 41 41 H 1.08999 * 117.49394 * 0.02562 * 13 12 10 42 42 H 1.09000 * 117.50173 * 359.97274 * 14 12 10 43 43 H 1.09001 * 117.50277 * 144.97129 * 14 12 10 44 44 H 1.09000 * 109.45939 * 301.33849 * 17 15 2 45 45 H 1.09002 * 109.46088 * 61.31286 * 17 15 2 46 46 H 1.08999 * 109.49944 * 58.58852 * 18 17 15 47 47 H 1.08997 * 109.49621 * 178.65232 * 18 17 15 48 48 H 1.08997 * 109.59009 * 174.42093 * 19 18 17 49 49 H 1.08997 * 109.58569 * 294.70749 * 19 18 17 50 50 H 0.97000 * 120.00424 * 179.97438 * 24 23 21 51 51 H 1.09005 * 109.58603 * 293.82371 * 29 20 19 52 52 H 1.09002 * 109.58479 * 173.39527 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1471 -0.0184 2.3571 6 8 1.8583 1.1583 2.4118 7 6 2.6489 -0.7290 3.5876 8 7 2.6978 0.2122 4.7093 9 6 3.9139 0.9892 4.9611 10 6 1.6239 0.3632 5.5095 11 8 0.6173 -0.2804 5.3014 12 6 1.6739 1.3317 6.6629 13 6 0.8032 2.5864 6.5703 14 6 0.4221 1.4592 7.5332 15 6 2.0400 -0.7211 -1.2493 16 1 1.6779 -1.7492 -1.2492 17 6 1.5302 -0.0001 -2.4992 18 6 2.0126 -0.7397 -3.7492 19 6 3.5442 -0.7367 -3.7803 20 7 4.0439 -1.2969 -2.5172 21 6 4.9328 -2.3385 -2.5192 22 1 4.9619 -3.0252 -1.6861 23 6 5.7965 -2.5118 -3.5919 24 7 6.0121 -1.5201 -4.4302 25 14 6.6529 -4.1524 -3.8462 26 1 5.8100 -5.0230 -4.7044 27 1 7.9649 -3.9291 -4.5048 28 1 6.8646 -4.8092 -2.5312 29 6 3.5720 -0.7180 -1.2519 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 2.2490 -1.6318 1.1525 34 1 3.6481 -1.1215 3.3986 35 1 1.9761 -1.5508 3.8324 36 1 4.5665 0.4346 5.6354 37 1 4.4324 1.1680 4.0191 38 1 3.6478 1.9433 5.4161 39 1 2.6414 1.4259 7.1562 40 1 1.1979 3.5060 7.0024 41 1 0.1938 2.7110 5.6751 42 1 -0.4379 0.8429 7.2713 43 1 0.5659 1.6369 8.5990 44 1 0.4405 0.0206 -2.4874 45 1 1.9128 1.0205 -2.5111 46 1 1.6512 -1.7677 -3.7259 47 1 1.6293 -0.2394 -4.6385 48 1 3.8941 -1.3457 -4.6138 49 1 3.9053 0.2850 -3.8974 50 1 6.6159 -1.6410 -5.1796 51 1 3.9354 0.3056 -1.1604 52 1 3.9400 -1.3147 -0.4173 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001661989029.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:29 Heat of formation + Delta-G solvation = -27.710490 kcal Electronic energy + Delta-G solvation = -30264.286002 eV Core-core repulsion = 26265.152267 eV Total energy + Delta-G solvation = -3999.133735 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.58882 -39.51183 -37.92888 -36.48520 -35.62989 -35.06695 -33.04751 -31.27350 -30.49819 -29.12042 -28.34138 -26.81812 -25.24878 -24.26235 -23.14177 -22.70626 -21.95251 -20.79949 -20.31691 -19.30047 -18.97253 -17.76566 -17.29434 -16.79993 -16.50193 -15.65339 -15.52405 -14.94921 -14.85190 -14.62058 -14.37530 -14.22405 -13.69172 -13.47853 -13.39417 -13.16872 -13.13719 -12.85902 -12.77836 -12.50769 -12.46065 -12.23386 -12.06292 -11.82954 -11.76263 -11.46915 -11.11817 -10.97713 -10.89795 -10.79761 -10.68190 -10.41982 -10.22843 -10.15835 -10.08011 -10.01147 -9.90525 -9.58312 -9.43464 -8.89246 -8.82324 -8.48090 -6.69148 -5.80709 -3.23410 2.24396 2.58612 2.71672 3.35156 3.39106 3.42050 3.43171 3.60112 4.20897 4.45614 4.48890 4.59215 4.73937 4.78283 4.89577 4.95725 5.01785 5.13164 5.28466 5.28898 5.31601 5.37433 5.42674 5.44008 5.49213 5.56455 5.61061 5.66869 5.78144 5.82639 5.83787 6.03792 6.08148 6.10086 6.17030 6.30947 6.35386 6.45488 6.58356 6.61610 6.71458 6.81047 6.87362 6.97625 7.08110 7.39247 7.61369 7.66607 7.76569 7.95637 8.32590 8.42623 9.18955 9.82799 10.39738 11.27430 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.016815 B = 0.002504 C = 0.002293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.757228 B =11181.406125 C =12206.506738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.150 3.850 3 H 0.084 0.916 4 N -0.718 5.718 5 C 0.499 3.501 6 O -0.537 6.537 7 C 0.094 3.906 8 N -0.596 5.596 9 C 0.082 3.918 10 C 0.550 3.450 11 O -0.539 6.539 12 C -0.193 4.193 13 C -0.149 4.149 14 C -0.150 4.150 15 C -0.111 4.111 16 H 0.071 0.929 17 C -0.101 4.101 18 C -0.142 4.142 19 C 0.169 3.831 20 N -0.592 5.592 21 C -0.252 4.252 22 H 0.065 0.935 23 C 0.002 3.998 24 N -0.901 5.901 25 Si 0.902 3.098 26 H -0.288 1.288 27 H -0.292 1.292 28 H -0.279 1.279 29 C 0.157 3.843 30 H 0.067 0.933 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.401 0.599 34 H 0.111 0.889 35 H 0.113 0.887 36 H 0.059 0.941 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.124 0.876 40 H 0.104 0.896 41 H 0.101 0.899 42 H 0.107 0.893 43 H 0.102 0.898 44 H 0.050 0.950 45 H 0.055 0.945 46 H 0.053 0.947 47 H 0.049 0.951 48 H 0.086 0.914 49 H 0.017 0.983 50 H 0.254 0.746 51 H 0.015 0.985 52 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.955 5.157 19.237 21.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.045 3.955 3 H 0.102 0.898 4 N -0.369 5.369 5 C 0.283 3.717 6 O -0.413 6.413 7 C -0.033 4.033 8 N -0.328 5.328 9 C -0.061 4.061 10 C 0.339 3.661 11 O -0.416 6.416 12 C -0.214 4.214 13 C -0.187 4.187 14 C -0.187 4.187 15 C -0.131 4.131 16 H 0.090 0.910 17 C -0.139 4.139 18 C -0.181 4.181 19 C 0.043 3.957 20 N -0.314 5.314 21 C -0.382 4.382 22 H 0.082 0.918 23 C -0.197 4.197 24 N -0.546 5.546 25 Si 0.732 3.268 26 H -0.215 1.215 27 H -0.218 1.218 28 H -0.205 1.205 29 C 0.030 3.970 30 H 0.086 0.914 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.235 0.765 34 H 0.129 0.871 35 H 0.131 0.869 36 H 0.077 0.923 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.142 0.858 40 H 0.123 0.877 41 H 0.119 0.881 42 H 0.125 0.875 43 H 0.121 0.879 44 H 0.069 0.931 45 H 0.073 0.927 46 H 0.072 0.928 47 H 0.067 0.933 48 H 0.104 0.896 49 H 0.035 0.965 50 H 0.064 0.936 51 H 0.033 0.967 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -8.536 5.668 19.023 21.607 hybrid contribution 0.828 -1.244 -0.392 1.545 sum -7.708 4.423 18.632 20.643 Atomic orbital electron populations 1.22190 0.95784 1.01871 1.02043 1.21023 0.93428 0.97404 0.83656 0.89797 1.46075 1.67032 1.14194 1.09628 1.21039 0.78006 0.87832 0.84829 1.90676 1.49835 1.15978 1.84848 1.21348 1.04206 0.92780 0.84965 1.47255 1.14799 1.42468 1.28252 1.21837 0.85963 0.95814 1.02492 1.19668 0.82154 0.82043 0.82227 1.90685 1.31051 1.47139 1.72700 1.22163 0.98374 1.00925 0.99957 1.22952 1.01487 0.91817 1.02396 1.22974 0.97397 1.01589 0.96724 1.21968 0.99482 0.99215 0.92472 0.91036 1.21443 0.98766 0.99008 0.94708 1.22175 1.00833 0.99350 0.95743 1.20793 0.87462 0.97229 0.90221 1.44050 1.49732 1.38081 0.99519 1.19161 1.11244 1.02212 1.05587 0.91755 1.25038 0.97303 0.97459 0.99879 1.70042 1.38042 1.29305 1.17195 0.86300 0.78684 0.83863 0.77959 1.21459 1.21795 1.20475 1.20845 0.89899 0.96241 0.89982 0.91401 0.92688 0.92761 0.76478 0.87135 0.86936 0.92289 0.90626 0.90576 0.85777 0.87731 0.88072 0.87477 0.87919 0.93130 0.92651 0.92783 0.93255 0.89575 0.96528 0.93632 0.96668 0.93137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.17 9.13 37.16 0.34 -1.83 16 2 C 0.15 2.19 2.16 -67.93 -0.15 2.04 16 3 H 0.08 1.40 7.58 -51.93 -0.39 1.00 16 4 N -0.72 -9.45 4.48 -53.81 -0.24 -9.69 16 5 C 0.50 6.99 7.86 -10.98 -0.09 6.90 16 6 O -0.54 -9.44 16.09 5.56 0.09 -9.35 16 7 C 0.09 1.01 5.89 -5.19 -0.03 0.98 16 8 N -0.60 -6.55 2.36 -182.95 -0.43 -6.98 16 9 C 0.08 0.64 10.01 59.85 0.60 1.24 16 10 C 0.55 6.89 7.46 -10.99 -0.08 6.81 16 11 O -0.54 -8.65 15.84 5.56 0.09 -8.56 16 12 C -0.19 -1.73 4.79 -91.77 -0.44 -2.17 16 13 C -0.15 -1.24 10.24 -26.69 -0.27 -1.51 16 14 C -0.15 -1.22 10.05 -26.70 -0.27 -1.49 16 15 C -0.11 -1.80 1.97 -90.50 -0.18 -1.98 16 16 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 17 C -0.10 -1.66 4.85 -26.69 -0.13 -1.79 16 18 C -0.14 -2.66 6.08 -26.61 -0.16 -2.82 16 19 C 0.17 3.98 5.31 -3.71 -0.02 3.96 16 20 N -0.59 -14.41 3.00 -172.31 -0.52 -14.93 16 21 C -0.25 -6.73 9.59 -15.06 -0.14 -6.88 16 22 H 0.06 1.67 7.89 -52.49 -0.41 1.26 16 23 C 0.00 0.05 4.91 -17.43 -0.09 -0.03 16 24 N -0.90 -25.90 11.19 55.49 0.62 -25.28 16 25 Si 0.90 21.30 29.59 -169.99 -5.03 16.27 16 26 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 27 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 28 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 29 C 0.16 3.15 5.56 -3.71 -0.02 3.13 16 30 H 0.07 0.86 6.40 -51.93 -0.33 0.53 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.40 4.51 8.43 -40.82 -0.34 4.16 16 34 H 0.11 0.88 8.07 -51.93 -0.42 0.46 16 35 H 0.11 1.20 7.42 -51.93 -0.39 0.82 16 36 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.07 0.63 8.07 -51.93 -0.42 0.21 16 38 H 0.08 0.53 6.64 -51.93 -0.34 0.18 16 39 H 0.12 0.79 7.27 -51.93 -0.38 0.41 16 40 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.10 1.04 8.14 -51.93 -0.42 0.61 16 42 H 0.11 1.06 7.67 -51.93 -0.40 0.66 16 43 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.05 0.72 6.36 -51.93 -0.33 0.39 16 45 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 46 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 47 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 48 H 0.09 2.28 6.04 -51.93 -0.31 1.97 16 49 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 50 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 51 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 52 H 0.05 0.97 7.45 -51.93 -0.39 0.58 16 LS Contribution 411.00 15.07 6.19 6.19 Total: -1.00 -34.26 411.00 -9.42 -43.68 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: -9.07 Total: 4.08 kcal Atomic # 6 Polarization: 5.68 SS G_CDS: -1.13 Total: 4.56 kcal Atomic # 7 Polarization: -56.32 SS G_CDS: -0.57 Total: -56.88 kcal Atomic # 8 Polarization: -18.08 SS G_CDS: 0.18 Total: -17.91 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.03 Total: 16.27 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -34.26 -9.42 -43.68 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661989029.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.973 kcal (2) G-P(sol) polarization free energy of solvation -34.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds